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Cabrera FP, Paiano MO, Fumo JT, Allsopp KR, Smith CM, Spalding HL, Kosaki RK, Sherwood AR. Organellar genomic characterization of Anunuuluaehu liula representing a new genus and species of Phyllophoraceae (Gigartinales, Rhodophyta) from the mesophotic zone of Hawai'i. JOURNAL OF PHYCOLOGY 2024; 60:116-132. [PMID: 38289653 DOI: 10.1111/jpy.13427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 11/22/2023] [Accepted: 12/15/2023] [Indexed: 02/17/2024]
Abstract
Over the last 2 decades, routine collections in the Hawaiian Archipelago have expanded to mesophotic reefs, leading to the discovery of a new red algal genus and species, here described as Anunuuluaehu liula gen. et sp. nov. This study provides a detailed genus and species description and characterizes chloroplast and mitochondrial organellar genomes. The new genus, Anunuuluaehu, shares many characteristics with the family Phyllophoraceae and shows close similarities to Archestennogramma and Stenogramma, including habit morphology, nemathecia forming proliferations at the outer cortex with terminal chains of tetrasporangia, and carposporophytes with multi-layered pericarps. The single species in this genus exhibits distinctive features within the Phyllophoraceae: the presence of single-layer construction of large medullary cells and the development of long, tubular gonimoblastic filaments. Multi-gene phylogenetic analyses confirmed it as a unique, monophyletic lineage within the family. Cis-splicing genes, interrupted by intron-encoded proteins within group II introns, are present in both the chloroplast and mitochondrial genomes of A. liula. Notably, a specific region of the coxI group II intron exhibits similarity to fungal introns. Anunuuluaehu liula is presumed to be endemic to the Hawaiian Archipelago and thus far is known to live solely at mesophotic depths from Hōlanikū to Kaho'olawe ranging from 54 to 201 m, which is the deepest collection record of any representative in the family. Overall, this study enhances our understanding of the genomic and taxonomic complexities of red algae in mesophotic habitats, emphasizing the significance of continued research in this area to uncover further insights into evolutionary processes and biogeographic patterns.
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Affiliation(s)
- Feresa P Cabrera
- School of Life Sciences, University of Hawai'i, Honolulu, Hawai'i, USA
| | - Monica O Paiano
- School of Life Sciences, University of Hawai'i, Honolulu, Hawai'i, USA
| | - James T Fumo
- School of Life Sciences, University of Hawai'i, Honolulu, Hawai'i, USA
| | - Kazumi R Allsopp
- School of Life Sciences, University of Hawai'i, Honolulu, Hawai'i, USA
| | - Celia M Smith
- School of Life Sciences, University of Hawai'i, Honolulu, Hawai'i, USA
| | - Heather L Spalding
- Department of Biology, College of Charleston, Charleston, South Carolina, USA
| | - Randall K Kosaki
- Papahānaumokuākea Marine National Monument, NOAA, Honolulu, Hawai'i, USA
| | - Alison R Sherwood
- School of Life Sciences, University of Hawai'i, Honolulu, Hawai'i, USA
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McCoy SJ, Krueger‐Hadfield SA, Mieszkowska N. Evolutionary Phycology: Toward a Macroalgal Species Conceptual Framework. JOURNAL OF PHYCOLOGY 2020; 56:1404-1413. [PMID: 32726874 PMCID: PMC7883729 DOI: 10.1111/jpy.13059] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Accepted: 07/16/2020] [Indexed: 06/11/2023]
Abstract
Species concepts formalize evolutionary and ecological processes, but often conflict with one another when considering the mechanisms that ultimately lead to species delimitation. Evolutionary biologists are, however, recognizing that the conceptualization of a species is separate and distinct from the delimitation of species. Indeed, if species are generally defined as separately evolving metapopulation lineages, then characteristics, such as reproductive isolation or monophyly, can be used as evidence of lineage separation and no longer conflict with the conceptualization of a species. However, little of this discussion has addressed the formalization of this evolutionary conceptual framework for macroalgal species. This may be due to the complexity and variation found in macroalgal life cycles. While macroalgal mating system variation and patterns of hybridization and introgression have been identified, complex algal life cycles generate unique eco-evolutionary consequences. Moreover, the discovery of frequent macroalgal cryptic speciation has not been accompanied by the study of the evolutionary ecology of those lineages, and, thus, an understanding of the mechanisms underlying such rampant speciation remain elusive. In this perspective, we aim to further the discussion and interest in species concepts and speciation processes in macroalgae. We propose a conceptual framework to enable phycological researchers and students alike to portray these processes in a manner consistent with dialogue at the forefront of evolutionary biology. We define a macroalgal species as an independently evolving metapopulation lineage, whereby we can test for reproductive isolation or the occupation of distinct adaptive zones, among other mechanisms, as secondary lines of supporting evidence.
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Affiliation(s)
- Sophie J. McCoy
- Department of Biological ScienceFlorida State University319 Stadium Dr.TallahasseeFlorida32312USA
| | - Stacy A. Krueger‐Hadfield
- Department of BiologyUniversity of Alabama at Birmingham1300 University BlvdBirminghamAlabama35294USA
| | - Nova Mieszkowska
- Department of Environmental SciencesUniversity of LiverpoolLiverpoolL69 3GPUK
- Marine Biological Association of the United KingdomThe LaboratoryCitadel HillPlymouthDevonPL1 2PBUK
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Lemay MA, Martone PT, Hind KR, Lindstrom SC, Wegener Parfrey L. Alternate life history phases of a common seaweed have distinct microbial surface communities. Mol Ecol 2018; 27:3555-3568. [PMID: 30055017 DOI: 10.1111/mec.14815] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Revised: 07/11/2018] [Accepted: 07/19/2018] [Indexed: 12/26/2022]
Abstract
Macroalgal life histories are complex, often involving the alternation of distinct free-living life history phases that differ in morphology, longevity and ploidy. The surfaces of marine macroalgae support diverse microbial biofilms, yet the degree of microbial variation between alternate phases is unknown. We quantified bacterial (16S rRNA gene) and microeukaryote (18S rRNA gene) communities on the surface of the common intertidal seaweed, Mastocarpus spp., which alternates between gametophyte (foliose, haploid) and sporophyte (encrusting, diploid) life history phases. A large portion (97%) of bacterial taxa on the surface Mastocarpus was also present in samples from the environment, indicating that macroalgal surface communities are largely assembled from the surrounding seawater. Still, changes in the relative abundance of bacterial taxa result in significantly different communities on alternate Mastocarpus life history phases, rocky substrate and seawater at all intertidal elevations. For microeukaryote assemblages, only high intertidal samples had significant differences between life history phases although sporophytes were not different from the rocky substrate at this elevation; gametophytes and sporophytes did not differ in microeukaryote communities in the mid and low zones. By sequencing three host genes, we identified three cryptic species of Mastocarpus in our data set, which co-occur in the mid-to-low intertidal zone. In these samples, M. alaskensis sporophytes harboured distinct bacterial communities compared to M. agardhii and M. intermedius sporophytes, which were not distinguishable. Conversely, microeukaryote communities did not differ among species.
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Affiliation(s)
- Matthew A Lemay
- Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.,Hakai Institute, Heriot Bay, British Columbia, Canada
| | - Patrick T Martone
- Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.,Hakai Institute, Heriot Bay, British Columbia, Canada
| | - Katharine R Hind
- Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.,Hakai Institute, Heriot Bay, British Columbia, Canada
| | - Sandra C Lindstrom
- Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.,Hakai Institute, Heriot Bay, British Columbia, Canada
| | - Laura Wegener Parfrey
- Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.,Hakai Institute, Heriot Bay, British Columbia, Canada.,Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada
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Niwa K, Kobiyama A. Speciation in the marine crop Pyropia yezoensis (Bangiales, Rhodophyta). JOURNAL OF PHYCOLOGY 2014; 50:897-900. [PMID: 26988643 DOI: 10.1111/jpy.12220] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2013] [Accepted: 05/27/2014] [Indexed: 06/05/2023]
Abstract
In the marine red alga Pyropia yezoensis, commonly known in Japan as nori, sympatric occurrence of two cryptic species Pyropia sp. 2 and Pyropia sp. 3 on the same rock in a natural habitat has been confirmed by molecular analysis and detailed morphological observations. To confirm whether Pyropia sp. 2 and Pyropia sp. 3 were reproductively isolated in the sympatric population, 170 blades that had previously been studied using a maternally inherited plastid marker were examined with a nuclear gene marker. The results suggested that Pyropia sp. 2 and Pyropia sp. 3 with identical morphological features were reproductively isolated in the sympatric population and that they were different species based on the biological species concept. Although gametophytic blades of Pyropia were usually assumed to be haploid, 18 of 170 blades possessed both of the two genotypes derived from Pyropia sp. 2 and from Pyropia sp. 3. These results inferred that allodiploid blades were generated from the interspecific hybridization between these two cryptic species. The present findings provide insights for future studies on the speciation mechanism in seaweeds, particularly for genera that contain numerous species.
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Affiliation(s)
- Kyosuke Niwa
- Fisheries Technology Institute, Hyogo Prefectural Technology Center for Agriculture, Forestry and Fisheries, Akashi, Hyogo, 674-0093, Japan
| | - Atsushi Kobiyama
- Laboratory of Aquatic Microbiology, School of Marine Biosciences, Kitasato University, Sagamihara, Kanagawa, 252-0373, Japan
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Krueger-Hadfield SA, Kübler JE, Dudgeon SR. Reproductive effort of Mastocarpus papillatus (Rhodophyta) along the California coast. JOURNAL OF PHYCOLOGY 2013; 49:271-281. [PMID: 23772094 PMCID: PMC3678391 DOI: 10.1111/jpy.12034] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Species with sexual and asexual life cycles may exhibit intraspecific differences in reproductive effort. The spatial separation of sexual and asexual lineages, called geographic parthenogenesis, is common in plants, animals and algae. Mastocarpus papillatus is a well-documented case of geographic parthenogenesis in which sexuals dominate southern populations, asexuals dominate northern populations, while mixed populations occur throughout central California. We quantified abundances and reproductive effort of sexual and asexual fronds and tetrasporophytes at eight sites in California to test the hypotheses that (1) reduced sexual reproduction at higher latitudes and tidal heights explains the observed geographic parthenogenesis and (2) reproductive effort (spore production per blade area) declines with increasing latitude. Abundances of all phases varied site-specifically. However, there was no geographic pattern of reproductive effort of fronds. Reproductive effort of fronds was greater in 2006 than in 2007 and correlated with sea surface temperatures. Sexual fronds exhibited greater reproductive effort than did asexual fronds and sexual reproductive effort was also inversely correlated with local upwelling index. Tetrasporophytes showed greater reproductive effort in northern sites, but total supply of tetraspores per m2 was greatest in the middle of the sampling range where crusts were more abundant. There was no decline of reproductive effort at higher latitudes. Geographic patterns of fecundity of life stages do not explain geographic parthenogenesis in M. papillatus. Site-specific differences in viability among spores or established thalli of different life cycles may explain their respective geographic distributions, as the sexual and asexual life cycles responded differently to environmental variations.
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Affiliation(s)
| | - Janet E. Kübler
- Department of Biology, California State University, Northridge, California 91330-8303, Phone: (818) 677-7322, FAX: (818) 677-2034
| | - Steven R. Dudgeon
- Department of Biology, California State University, Northridge, California 91330-8303, Phone: (818) 677-7322, FAX: (818) 677-2034
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González A, Beltrán J, Hiriart-Bertrand L, Flores V, de Reviers B, Correa JA, Santelices B. IDENTIFICATION OF CRYPTIC SPECIES IN THE LESSONIA NIGRESCENS COMPLEX (PHAEOPHYCEAE, LAMINARIALES)(1). JOURNAL OF PHYCOLOGY 2012; 48:1153-1165. [PMID: 27011275 DOI: 10.1111/j.1529-8817.2012.01200.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
The kelp Lessonia nigrescens Bory is the most ecologically and economically important seaweed in rocky intertidal and shallow subtidal habitats along the temperate Pacific South American coasts. Recent molecular studies suggest the existence of two lineages, one (northern lineage) from 17° S to 30° S and a second (central lineage) from 29° S to 41° S. To identify and name these lineages we performed morphological, nomenclatural and field studies. Four external and three internal anatomical traits permitted a morphological separation of the two lineages. The internal structure of both lineages was different from the isolectotype of Lessonia nigrescens. It is therefore concluded that the name Lessonia nigrescens should not be used for the Chilean material. Chordaria spicata Suhr appears as the oldest available name for the central lineage, while Lessonia berteroana Montagne is the oldest name for the northern lineage. In both cases, the type material consisted of small-sized, apical branches of larger plants. The new combination Lessonia spicata (Suhr) Santelices is proposed for the central lineage and we reinstate Lessonia berteroana for the northern lineage. Laminaria scissa Suhr is reduced to synonym of L. spicata. Representative specimens of Lessonia nigrescens were not found during new visits to its type locality in Cape Horn and along Chile. Future studies should verify the status of this species.
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Affiliation(s)
- Alejandra González
- Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, ChileCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, ChileMuseum National d'Histoire Naturelle, Department Systematique et Evolution, Batiment de Cryptogamie, 57, rue Cuvier 75231, Paris, Cedex 05, FranceCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, Chile
| | - Jessica Beltrán
- Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, ChileCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, ChileMuseum National d'Histoire Naturelle, Department Systematique et Evolution, Batiment de Cryptogamie, 57, rue Cuvier 75231, Paris, Cedex 05, FranceCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, Chile
| | - Luciano Hiriart-Bertrand
- Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, ChileCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, ChileMuseum National d'Histoire Naturelle, Department Systematique et Evolution, Batiment de Cryptogamie, 57, rue Cuvier 75231, Paris, Cedex 05, FranceCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, Chile
| | - Verónica Flores
- Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, ChileCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, ChileMuseum National d'Histoire Naturelle, Department Systematique et Evolution, Batiment de Cryptogamie, 57, rue Cuvier 75231, Paris, Cedex 05, FranceCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, Chile
| | - Bruno de Reviers
- Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, ChileCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, ChileMuseum National d'Histoire Naturelle, Department Systematique et Evolution, Batiment de Cryptogamie, 57, rue Cuvier 75231, Paris, Cedex 05, FranceCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, Chile
| | - Juan A Correa
- Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, ChileCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, ChileMuseum National d'Histoire Naturelle, Department Systematique et Evolution, Batiment de Cryptogamie, 57, rue Cuvier 75231, Paris, Cedex 05, FranceCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, Chile
| | - Bernabé Santelices
- Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, ChileCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, ChileMuseum National d'Histoire Naturelle, Department Systematique et Evolution, Batiment de Cryptogamie, 57, rue Cuvier 75231, Paris, Cedex 05, FranceCenter for Advanced Studies in Ecology and Biodiversity and Departmento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Casilla 114-D, Santiago, Chile
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Fierst JL, Kübler JE, Dudgeon SR. Spatial distribution and reproductive phenology of sexual and asexual Mastocarpus papillatus (Rhodophyta). PHYCOLOGIA 2010; 49:274-282. [PMID: 20802792 PMCID: PMC2926972 DOI: 10.2216/ph09-41.1] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Species of the genus Mastocarpus exhibit two distinct life cycles, a sexual alternation of generations and an obligate, asexual direct life cycle that produces only female upright fronds. In the intertidal red alga, M. papillatus (Kützing) sexual fronds dominate southern populations and asexual fronds dominate northern populations along the northeast Pacific coast, a pattern of spatial separation called geographic parthenogenesis. Along the central coast of California, sexual and asexual variants occur in mixed populations, but it is not known whether they are spatially separated within the intertidal zone at a given site. We investigated reproductive phenologies and analyzed patterns of spatial distributions of sexual and asexual M. papillatus at three sites in this region. Sexual M. papillatus were aggregated lower on the shore at two sites and only reproduced during part of a year, while asexual M. papillatus occurred throughout the intertidal range at all sites and reproduced throughout the year. The distribution patterns of sexual and asexual M. papillatus are consistent with a hypothesis of shoreline topography influencing their dynamics of dispersal and colonization. Spatial and temporal partitioning may contribute to the long-term coexistence of sexual and asexual life histories in this, and other, species of Mastocarpus. The occurrence of geographic parthenogenesis at multiple spatial scales in M. papillatus provides an opportunity to gain insight into the phenomenon.
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Affiliation(s)
| | - Janet E. Kübler
- Department of Biology, California State University, Northridge, CA 91330-8303
| | - Steven R. Dudgeon
- Department of Biology, California State University, Northridge, CA 91330-8303
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