NATURAL TRIPLOIDS IN THE ORCHARD GRASS,DACTYLIS GLOMERATAL., POLYPLOID COMPLEX AND THEIR SIGNIFICANCE FOR GENE FLOW FROM DIPLOID TO TETRAPLOID LEVELS

Relative genome size variation in the African agroforestry tree Parkia biglobosa (Fabaceae: Caesalpinioideae) and its relation to geography, population genetics, and morphology

Variation in genome size and in chromosome number can be linked to genetic, morphological, and ecological characteristics, and thus be taxonomically significant. We screened the relative genome size (RGS) and counted the number of mitotic chromosomes in the African agroforestry tree Parkia biglobosa, a widely distributed savannah species that shows conspicuous morphological clinal variation and strong genetic structure, and tested for linkage of RGS variation to geography, leaf morphology, and population genetic variation. An improved protocol for the preparation of chromosomes was developed. The study is based on 58 individuals from 15 populations covering most of the distribution range of the species. We observed differences in RGS among individuals of up to 10.2%, with some of the individuals differing statistically in RGS from the bulk of screened individuals. Most of the RGS variation was within populations, whereas variation was unrelated to any of the tested features of the species. Those chromosome numbers that could be exactly established were invariable 2n = 2x = 26. In conclusion, there was no evidence from the karyological data for structured intraspecific taxonomic heterogeneity.

Genotyping by Sequencing and Plastome Analysis Finds High Genetic Variability and Geographical Structure in Dactylis glomerata L. in Northwest Europe Despite Lack of Ploidy Variation

Large collections of the forage and bioenergy grass Dactylis glomerata were made in northwest (NW) Europe along east to west and north to south clines for genetic resource conservation and to inform breeding programmes of genetic diversity, genepools, and ploidy. Leaves were sampled for genetic analysis and seed and rhizome for ex-situ conservation. Genotyping by sequencing (GBS) was used to assay nuclear DNA diversity and plastome single nucleotide polymorphism (SNP) discovery was undertaken using a long-read PCR and MiSeq approach. Nuclear and plastid SNPs were analysed by principal component analysis (PCA) to compare genotypes. Flow cytometry revealed that all samples were tetraploid, but some genome size variation was recorded. GBS detected an average of approximately 10,000 to 15,000 SNPs per country sampled. The highest average number of private SNPs was recorded in Poland (median ca. 2000). Plastid DNA variation was also high (1466 SNPs, 17 SNPs/kbp). GBS data, and to a lesser extent plastome data, also show that genetic variation is structured geographically in NW Europe with loose clustering matching the country of plant origin. The results reveal extensive genetic diversity and genetic structuring in this versatile allogamous species despite lack of ploidy variation and high levels of human mediated geneflow via planting.

The morphometrics of autopolyploidy: insignificant differentiation among sexual-apomictic cytotypes

Polyploidization of the plant genome affects the phenotype of individuals including their morphology, i.e. size and form. In autopolyploids, we expect mainly nucleotypic effects, from a number of monoploid genomes (i.e. chromosome sets) or genome size, seen from an increase in size or dimension of the polyploids compared with the diploids (or lower ploids). To identify nucleotypic effects, confounding effects of hybridity (observed in allopolyploids), postpolyploidization processes or environmental effects need to be considered. We morphometrically analysed five ploidy cytotypes of the sexual-apomictic species Potentilla puberula cultivated ex situ under the same experimental conditions. Sexuals are mainly tetraploid, while higher ploidy (penta- to octoploidy) is typically associated with the expression of apomixis. The cytotypes likely arose via autopolyploidization although historic involvement of another species in the origin of apomicts cannot be fully ruled out, suggested by a slight molecular differentiation among reproductive modes. We (i) revisited molecular differentiation using amplified fragment length polymorphisms and performed a morphometric analysis to test (ii) if cytotypes are morphologically differentiated from each other and (iii) if the size of individuals is related to their ploidy. Weak molecular differentiation of sexual versus apomictic individuals was confirmed. Cytotypes and reproductive modes were also morphologically poorly differentiated from each other, i.e. apomicts largely resampled the variation of the sexuals and did not exhibit a unique morphology. Overall size of individuals increased moderately but significantly with ploidy (ca. 14 % in the comparison of octo- with tetraploids). The results support an autopolyploid origin of the P. puberula apomicts and suggest a nucleotypic effect on overall plant size. We discuss taxonomic consequences of the results in the context of data on reproductive relationships among cytotypes and their ecological preferences and evolutionary origin, and conclude that cytotypes are best treated as intraspecific variants within a single species.

The role of triploids in the origin and evolution of polyploids of Turnera sidoides complex (Passifloraceae, Turneroideae)

Triploids can play an important role in polyploid evolution. However, their frequent sterility is an obstacle for the origin and establishment of neotetraploids. Here we analyzed the microsporogenesis of triploids (x = 7) and the crossability among cytotypes of Turnera sidoides, aiming to test the impact of triploids on the origin and demographic establishment of tetraploids in natural populations. Triploids of T. sidoides exhibit irregular meiotic behavior. The high frequency of monovalents and of trivalents with non-convergent orientations results in unbalanced and/or non-viable male gametes. In spite of abnormalities in chromosome pairing and unbalanced chromosome segregation, triploids are not completely sterile and yielded up to 67% of viable pollen. Triploids that originated by the fusion of 2n × n gametes of the same taxon showed more regular meiotic behavior and higher fertility than triploids from the contact zone of diploids and tetraploids or triploids of hybrid origin. The reproductive isolation of T. sidoides cytotypes of different ploidy level is not strict and the 'triploid block' may be overcome occasionally. Triploids of T. sidoides produce diploid and triploid progeny suggesting that new generations of polyploids could originate from crosses between triploids or from backcrosses with diploids. The capability of T. sidoides to multiply asexually by rhizomes, would enhance the likelihood that a low frequency of neopolyploids can be originated and maintained in natural populations of T. sidoides.

Using principle component analysis to compare genetic diversity across polyploidy levels within plant complexes: an example from British Restharrows (Ononis spinosa and Ononis repens)

The investigation of genetic diversity between related plant populations which differ in ploidy levels is problematic, with common statistical methods developed for diploids being inappropriate for polyploid species. Studies into gene flow in such complexes are critical and can shed light on the mechanisms that generate and maintain populations of different polyploidy levels. We have investigated the use of principle component (PCO) analysis as one approach to elucidate population structure within British Restharrows (Leguminsoae, Ononis spp). Restharrows were common agricultural weed species until the advent of mechanical ploughing and both diploid (2n=2x=30; O. spinosa and O. intermedia) and tetraploid (2n=4x=60; O. repens and O. maritima) taxa exist. Patterns of genetic diversity were investigated among British Restharrows using 10 microsatellite loci with 21 Restharrow populations analysed (411 individual plants) from Central and Eastern Britain. PCO analysis revealed clear genetic differentiation of the sampled plants into two groups, corresponding to O. spinosa/O. intermedia (diploid) and O. repens/O. maritima (tetraploid) plants. Evidence of genetic differentiation by distance was also revealed for O. repens/O. maritima, but not for O. spinosa/O. intermedia. The data suggest the presence of strong reproductive barriers between diploid and tetraploid Restharrows in Britain, but not within ploidy levels. This genetic isolation between ploidy levels is confirmed by a detailed analysis of a sympatric site (Harton Down Hill). These results demonstrate that PCA analysis is a suitable general tool for comparing related species of different ploidy levels.

On the origin of six-rowed barley with brittle rachis, agriocrithon [Hordeum vulgare ssp. vulgare f. agriocrithon (Aberg) Bowd.], based on a DNA marker closely linked to the vrs1 (six-row gene) locus

The origin of six-rowed cultivated barley has been revealed to be more complex since the discovery of agriocrithon, a six-rowed barley with brittle rachis. The present study investigates whether such six-rowed brittle barley is wild or hybrid in nature, by analyzing genetic diversity at the cMWG699 marker locus, which is closely linked to the vrs1 (six-row gene) locus. DNA sequence analysis for 42 accessions showed only three types in six-rowed brittle barleys; in contrast, nine sequence types were found in ten wild barleys, ssp. spontaneum, in our previous study. Nucleotide diversities for the six-rowed brittle barley were 2.8-4.5 times lower than that for the ssp. spontaneum at this marker locus. The three sequence types found in the six-rowed brittle barley also appeared in the six-rowed cultivated barley. A cross-allelism test confirmed that the six-rowed character of the six-rowed brittle barley was controlled by the vrs1 locus. The nucleotide diversity and genealogy demonstrated that f. agriocrithon does not have the same level of diversity as found in wild barley, ssp. spontaneum. Consequently, f. agriocrithon does not appear to represent genuinely wild populations, but more probably originated from hybridization between ssp. spontaneum and six-rowed cultivated barley.

Genetics and geography of wild cereal domestication in the near east

About 12,000 years ago, humans began the transition from hunter-gathering to a sedentary, agriculture-based society. From its origins in the Near East, farming expanded throughout Europe, Asia and Africa, together with various domesticated plants and animals. Where, how and why agriculture originated is still debated. But newer findings, on the basis of genome-wide measures of genetic similarity, have traced the origins of some domesticated cereals to wild populations of naturally occurring grasses that persist in the Near East. A better understanding of the genetic differences between wild grasses and domesticated crops adds important facets to the continuing debate on the origin of Western agriculture and the societies to which it gave rise.

Fecundity and offspring ploidy in matings among diploid, triploid and tetraploid Chamerion angustifolium (Onagraceae): consequences for tetraploid establishment

Models of polyploid evolution indicate that tetraploids are more likely to establish within diploid populations when they are formed recurrently through the union of unreduced (n=2n) gametes. To account for the coexistence of diploids and tetraploids in populations of Chamerion angustifolium, diploid, triploid and tetraploid plants were crossed in all possible combinations and fecundity and ploidy using flow cytometry of the resulting progeny were measured. Combined with previous data on cytotype fitness, these data were used in a simulation to examine the impact of unreduced gametes on tetraploid evolution. Seed set per fruit was highest in 2x x 2x crosses (69%), intermediate in 4x x 4x, 2x x 4x and 3x x 4x crosses (range, 11-35%) and lowest in 3x x 2x and 3x x 3x crosses (range, 1-10%). Offspring were diploid (94%) or triploid (6%) in 2x x 2x crosses, diploid (17.5%), triploid (56%) or tetraploid (26.5%) in 3x x 2x crosses, and triploid (53%) and tetraploid (44%) in all others (4x x 4x, 3x x 4x, 2x x 4x), indicating that some gametes are unreduced, particularly in triploids. Forty-two percent of offspring, from three different crosses, had DNA contents greater than tetraploids. Computer simulations based on these results showed that unreduced gamete formation via triploids in C. angustifolium can promote the coexistence of diploids and tetraploids, but, due to law triploid fitness, is insufficient to overcome tetraploid minority disadvantage.

Gametes with the somatic chromosome number: mechanisms of their formation and role in the evolution of autopolyploid plants

The production of 2n gametes in plants, i.e. gametes with a somatic chromosome number, is considered to be the dominant process involved in the origin of polyploid plants. In this review, we provide a synthesis of current knowledge concerning the production of 2n gametes. Firstly, we describe the different methods used to detect and quantify the production of 2n gametes in plants, which include morphological and flow cytometry screening of the occurrence of 2n pollen, the analysis of crosses among diploid and tetraploid parents and the instigation of micro-and mega-sporogenesis. Secondly, the high level of inter- and infra-specific variation in 2n gametes production is described. Thirdly, the various cytological anomalies responsible for the production of 2n gametes are reviewed, with particular reference to the relative genetic consequences of the first and second restitution divisions that give rise to 2n gametes. Fourthly, the significance of 2n gametes in crop plant improvement is discussed, in relation to somatic chromosome doubling to obtain new polyploid varieties. In particular, we compare the genetic and yield consequences of methods based on unilateral and bilateral sexual polyploidization. Finally, we outline how knowledge of the variety of mechanisms involved in 2n gamete production have increased our understanding of the evolutionary significance of polyploidy and the population biology of polyploid plants. Contents Summary 1 I. Introduction 2 II. Methods used to detect the presence and frequency of 2n gametes 3 III. Frequency of 2n gamete production 5 IV. Mechanisms of formation and the influence of external factors 6 V. The genetic consequences of First Division Restitution (FDR) and Second Division Restitution (SDR) 12 VI. 2n gametes and the unilateral and bilateral sexual polyploidization of crop plants 13 VII. The evolutionary significance of 2n gamete production 15 Acknowledgements 18 References 18.

Flowering characteristics and fertility of interploidy progeny from normal and 2n gametes in Dactylis glomerata L

We performed an extensive experiment to compare male fertility, flowering period, seed set and germination rate between triploid and tetraploid cross-progeny of Dactylis glomerata L. originating from reciprocal diploid (2x) × tetraploid (4x) crosses. Four hundred and forty-five triploid and tetraploid individuals, constituting the cross progeny of 2x-4x reciprocal crosses between diploids from nine distinct subspecies, and tetraploids from five subspecies, were tested for male fertility and phenology under homogeneous conditions. A significant negative correlation was observed between the parental genetic distance and the frequency of sterile panicles (ST) in 3x progeny, suggesting that selection may occur against fertility in triploid progeny from interploid crosses involving closely related subspecies. Genetic distance between the parental subspecies was not significantly correlated with the frequency of fertile panicles (FT), non-spreading panicles (NT, non-dehiscent anthers with pollen inside), and ST panicles in the 4x progeny, nor with the frequency of FT and NT panicles in the 3x progeny. Among the 4x progeny individuals that produced panicles, more than 60% were fully fertile, but 24% possessed only sterile panicles. In the triploids, 63% of the reproductive plants were male-sterile, but 31% had variable proportions of fertile panicles and 6% possessed only fertile panicles. Male fertility in the progeny was significantly affected by individual ploidy level, parental diploid subspecies identity, and by the interaction between these 2 factors in the case of the fertile progeny plants. The frequency of vegetative plants was higher in 4x progeny than in 3x progeny, more particularly when the seed parent was tetraploid. However, when the seed parent was diploid, the frequencies of vegetative plants were similar in 3x and 4x progeny. Pollen viability was significantly higher in anthers from fertile panicles than in anthers from non-spreading panicles; viability of pollen from non-spreading panicles was, in turn, significantly higher than in sterile panicles. Also, seed set was higher in panicles with fertile anthers than in the two other types. However, seeds from plants with fertile, non-spreading and sterile anthers showed no differences in germination rate. Therefore, in Dactylis glomerata, tetraploid cross progeny arising from 2n gametes possess higher fertility, on average, than triploid cross progeny involving normal gametes. In addition to lower male fertility (non-spreading or atrophied anthers), the triploids also showed significantly lower pollen fertility in anthers and lower seed set in open pollinating conditions, probably because disturbance in meiosis, due to odd chromosome associations, also occurs in eggs. Moreover, triploids were observed to reproduce preferentially with individuals possessing the same ploidy levels as their seed parent. These results suggest that the production of 4x individuals, derived from 2n gametes in interploid crosses, is likely to be the main effective means of direct gene transfer in contact areas of populations or subspecies possessing distinct ploidy levels.

Autopolyploidy in Dactylis glomerata L.: further evidence from studies of chloroplast DNA variation

Chloroplast DNA variation has been used to examine some of the maternal lineages involved in the evolution of the intraspecific polyploid complex, Dactylis glomerata L. Diploid (2x) and tetraploid (4x) individuals were collected from natural populations of the subspecies glomerata (4x), marina (4x) and lusitanica (2x), as well as from sympatric 2x/4x populations of the Galician type. Digestion of their ctDNA with 11 restriction endonucleases revealed enough variation to characterise three ctDNA variants, designated MBMK, MBmK and mBMK. The distribution of these ctDNA variants reflects different stages in their spread among the populations. The MBMK ctDNA variant predominated at both ploidy levels in subspecies glomerata, lusitanica and marina, and in recent tetraploid Galician/glomerata hybrids. The MBmK variant was detected in a single tetraploid individual and probably results from a relatively recent mutation. Fixation of the mBMK minority variant in the diploid and tetraploid Galician populations adds to the evidence concerning the possible origin of the Galician tetraploids. It means that the Galician diploids were maternal ancestors of the tetraploids. This result complements evidence from earlier studies based on morphology or biochemical markers, and reduces the likelihood that the tetraploids arose by hybridisation between an ancient Galician diploid and an alien tetraploid. It is, however, consistent with a true autopolyploid origin of the tetraploids.

A TAXONOMIC STUDY OF WESTERN CANADIAN SPECIES IN THE GENUS BETULA

Five western North American birches, Betula fontinalis, B. glandulosa, B. glandulifera, B. resinifera, and B. papyrifera, are studied taxonomically. Four hybrids, B. × winteri, B. × sargentii, B. × arbuscula, and B. × uliginosa, are described for the first time and three others, B. × utahensis, B. × eastwoodae, and B. × sandbergii, are also included. Populations formed when species are in contact have been analyzed and the nature of several hybrid entities determined. B. × uliginosa results from B. resinifera × B. glandulifera. In this population, introgression is toward B. glandulifera, which has the higher chromosome number. B. glandulifera also hybridizes with B. glandulosa producing B. × sargentii. Most gene flow is toward B. glandulifera, which has the higher chromosome number. In B. glandulosa × B. fontinalis (B. × eastwoodae) introgression was little influenced by environmental selection, the hybrid was as common as either parental species, and any gene flow was in either direction. B. × utahensis results from B. papyrifera × B. fontinalis. Introgression is toward B. papyrifera. Hybridization of B. × sargentii and B. papyrifera produces B. × arbuscula, a rare hybrid. Hybridization of B. resinifera and B. papyrifera results in B. × winteri, with introgression in both directions. B. × sandbergii results from B. papyrifera × B. glandulifera. Probably as a result of environmental influence in the analysis area, introgression was toward B. glandulifera, with the lower chromosome number.