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Westphal MF, Massie JL, Bronkema JM, Smith BE, Morgan TJ. Heritable variation in garter snake color patterns in postglacial populations. PLoS One 2011; 6:e24199. [PMID: 21935386 PMCID: PMC3173445 DOI: 10.1371/journal.pone.0024199] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2011] [Accepted: 08/03/2011] [Indexed: 11/19/2022] Open
Abstract
Global climate change is expected to trigger northward shifts in the ranges of natural populations of plants and animals, with subsequent effects on intraspecific genetic diversity. Investigating how genetic diversity is patterned among populations that arose following the last Ice Age is a promising method for understanding the potential future effects of climate change. Theoretical and empirical work has suggested that overall genetic diversity can decrease in colonial populations following rapid expansion into postglacial landscapes, with potential negative effects on the ability of populations to adapt to new environmental regimes. The crucial measure of this genetic variation and a population's overall adaptability is the heritable variation in phenotypic traits, as it is this variation that mediates the rate and direction of a population's multigenerational response to selection. Using two large full-sib quantitative genetic studies (N(Manitoba) = 144; N(South Dakota) = 653) and a smaller phenotypic analysis from Kansas (N(Kansas) = 44), we compared mean levels of pigmentation, genetic variation and heritability in three pigmentation traits among populations of the common garter snake, Thamnophis sirtalis, along a north-south gradient, including a postglacial northern population and a putative southern refuge population. Counter to our expectations, we found that genetic variance and heritability for the three pigmentation traits were the same or higher in the postglacial population than in the southern population.
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Affiliation(s)
- Michael F Westphal
- Division of Biology and The Ecological Genomics Institute, Kansas State University, Manhattan, Kansas, United States of America.
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Kekkonen J, Seppä P, Hanski IK, Jensen H, Väisänen RA, Brommer JE. Low genetic differentiation in a sedentary bird: house sparrow population genetics in a contiguous landscape. Heredity (Edinb) 2010; 106:183-90. [PMID: 20372181 DOI: 10.1038/hdy.2010.32] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
The house sparrow Passer domesticus has been declining in abundance in many localities, including Finland. We studied the genetic diversity and differentiation of the house sparrow populations across Finland in the 1980s, at the onset of the species' decline in abundance. We genotyped 472 adult males (the less dispersive sex) from 13 locations in Finland (covering a range of 400 × 800 km) and one in Sweden (Stockholm) for 13 polymorphic microsatellite markers. Our analysis of Finnish ringing records showed that natal dispersal distances are limited (90% <16 km), which confirmed earlier finding from other countries. The Finnish populations were panmictic, and genetically very homogeneous and the limited dispersal was sufficiently large to maintain their connectivity. However, all Finnish populations differed significantly from the Stockholm population, even though direct geographical distance to it was often smaller than among Finnish populations. Hence, the open sea between Finland and Sweden appears to form a dispersal barrier for this species, whereas dispersal is much less constrained across the Finnish mainland (which lacks geographical barriers). Our findings provide a benchmark for conservation biologists and emphasize the influence of landscape structure on gene flow.
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Affiliation(s)
- J Kekkonen
- Department of Biological & Environmental Sciences, University of Helsinki, Helsinki, Finland.
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DAWSON DEBORAHA, HORSBURGH GAVINJ, KÜPPER CLEMENS, STEWART IANRK, BALL ALEXANDERD, DURRANT KATEL, HANSSON BENGT, BACON IDA, BIRD SUSANNAH, KLEIN ÁKOS, KRUPA ANDREWP, LEE JIN, MARTÍN‐GÁLVEZ DAVID, SIMEONI MICHELLE, SMITH GEMMA, SPURGIN LEWISG, BURKE TERRY. New methods to identify conserved microsatellite loci and develop primer sets of high cross‐species utility – as demonstrated for birds. Mol Ecol Resour 2010; 10:475-94. [DOI: 10.1111/j.1755-0998.2009.02775.x] [Citation(s) in RCA: 126] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- DEBORAH A. DAWSON
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - GAVIN J. HORSBURGH
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - CLEMENS KÜPPER
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - IAN R. K. STEWART
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - ALEXANDER D. BALL
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - KATE L. DURRANT
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - BENGT HANSSON
- Department of Animal Ecology, Ecology Building, Lund University SE‐223 62 Lund, Sweden
| | - IDA BACON
- Institute of Evolutionary Biology, School of Biological Sciences, King’s Building, University of Edinburgh, Edinburgh, EH9 3JT, Scotland, UK
| | - SUSANNAH BIRD
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - ÁKOS KLEIN
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - ANDREW P. KRUPA
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - JIN‐WON LEE
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - DAVID MARTÍN‐GÁLVEZ
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - MICHELLE SIMEONI
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - GEMMA SMITH
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - LEWIS G. SPURGIN
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - TERRY BURKE
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
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Merilä, Björklund. Population divergence and morphometric integration in the greenfinch (Carduelis chloris) – evolution against the trajectory of least resistance? J Evol Biol 2008. [DOI: 10.1046/j.1420-9101.1999.00013.x] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Affiliation(s)
- Merilä
- Department of Zoology, Section of Animal Ecology, Uppsala University, Villavägen 9, S‐752 36 Uppsala, Sweden
| | - Björklund
- Department of Zoology, Section of Animal Ecology, Uppsala University, Villavägen 9, S‐752 36 Uppsala, Sweden
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Palo JU, O'Hara RB, Laugen AT, Laurila A, Primmer CR, Merilä J. Latitudinal divergence of common frog (Rana temporaria) life history traits by natural selection: evidence from a comparison of molecular and quantitative genetic data. Mol Ecol 2003; 12:1963-78. [PMID: 12803645 DOI: 10.1046/j.1365-294x.2003.01865.x] [Citation(s) in RCA: 147] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The relative roles of natural selection and direct environmental induction, as well as of natural selection and genetic drift, in creating clinal latitudinal variation in quantitative traits have seldom been assessed in vertebrates. To address these issues, we compared molecular and quantitative genetic differentiation between six common frog (Rana temporaria) populations along an approximately 1600 km long latitudinal gradient across Scandinavia. The degree of population differentiation (QST approximately 0.81) in three heritable quantitative traits (age and size at metamorphosis, growth rate) exceeded that in eight (neutral) microsatellite loci (FST = 0.24). Isolation by distance was clear for both neutral markers and quantitative traits, but considerably stronger for one of the three quantitative traits than for neutral markers. QST estimates obtained using animals subjected to different rearing conditions (temperature and food treatments) revealed some environmental dependency in patterns of population divergence in quantitative traits, but in general, these effects were weak in comparison to overall patterns. Pairwise comparisons of FST and QST estimates across populations and treatments revealed that the degree of quantitative trait differentiation was not generally predictable from knowledge of that in molecular markers. In fact, both positive and negative correlations were observed depending on conditions where the quantitative genetic variability had been measured. All in all, the results suggest a very high degree of genetic subdivision both in neutral marker genes and genes coding quantitative traits across a relatively recently (< 9000 years) colonized environmental gradient. In particular, they give evidence for natural selection being the primary agent behind the observed latitudinal differentiation in quantitative traits.
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Affiliation(s)
- J U Palo
- Ecological Genetics Research Unit, Department of Ecology and Systematics, PO Box 65, FIN-00014 University of Helsinki, Finland
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Ruedi M, Castella V. Genetic consequences of the ice ages on nurseries of the bat Myotis myotis: a mitochondrial and nuclear survey. Mol Ecol 2003; 12:1527-40. [PMID: 12755881 DOI: 10.1046/j.1365-294x.2003.01828.x] [Citation(s) in RCA: 78] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Analyses of mitochondrial DNA (mtDNA) control region polymorphism and of variation at 10 nuclear microsatellite loci were used to investigate the mechanisms and genetic consequences of postglacial expansion of Myotis myotis in Europe. Initial sampling consisted of 480 bats genotyped in 24 nursery colonies arranged along a transect of approximately 3000 km. The phylogeographical survey based on mtDNA sequences revealed the existence of major genetic subdivisions across this area, with several suture zones between haplogroups. Such zones of secondary contact were found in the Alps and Rhodopes, whereas other potential barriers to gene flow, like the Pyrenees, did not coincide with genetic discontinuities. Areas of population admixture increased locally the genetic diversity of colonies, which confounded the northward decrease in nucleotide diversity predicted using classical models of postglacial range expansion. However, when analyses were restricted to a subset of 15 nurseries originating from a single presumed glacial refugium, mtDNA polymorphism did indeed support a northwards decrease in diversity. Populations were also highly structured (PhiST = 0.384). Conversely, the same subset of colonies showed no significant latitudinal decrease in microsatellite diversity and much less population structure (FST = 0.010), but pairwise genetic differentiation at these nuclear markers was strongly correlated with increasing geographical distance. Together, this evidence suggests that alleles carried via male bats have maintained enough nuclear gene flow to counteract the effects of recurrent bottlenecks generally associated with recolonization processes. As females are highly philopatric, we argue that the maternally transmitted mtDNA marker better reflects the situation of past, historical gene flow, whereas current levels of gene flow are better reflected by microsatellite markers.
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Affiliation(s)
- M Ruedi
- Natural History Museum, CP 6436, 1211 Geneva 6, Switzerland.
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