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Kiviniemi E, Mikkola A, Mattila H, Wahlsten M, Lundell T. Oxidative stress and culture atmosphere effects on bioactive compounds and laccase activity in the white rot fungus Phlebia radiata on birch wood substrate. CURRENT RESEARCH IN MICROBIAL SCIENCES 2024; 7:100280. [PMID: 39398196 PMCID: PMC11466665 DOI: 10.1016/j.crmicr.2024.100280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2024] Open
Abstract
Wood-decaying white rot fungi live in changing environmental conditions and may switch from aerobic to fermentative metabolism under oxygen depletion. Decomposition of wood and lignocellulose by fungi is dependent on enzymatic and oxidative biochemistry including generation of reactive oxygen species. In this study, we subjected semi-solid wood-substrate cultures of the white rot fungus Phlebia radiata to oxidative stress by addition of hydrogen peroxide under aerobic and anaerobic cultivation conditions. Wood decomposition and fungal metabolism were followed by analysis of extracellular organic compounds, mycelial growth, and laccase activity. Under both atmospheric conditions, accumulation of bioactive aromatic compounds from birch wood occurred into the culture supernatants after hydrogen peroxide treatment. The supernatants inhibited both fungal growth and laccase activity. However, the fungus recovered from the oxidative stress quickly in a few days, especially when cultivated under regular aerobic conditions. With repeated hydrogen peroxide treatments, laccase suppressive-recovery effect was observed. Culture supernatants demonstrated antioxidant and antimicrobial effects, in concert with emergence of chlorinated birch-derived organic compounds. Bioactivities in the cultures disappeared in the same pace as the chlorinated compounds were transformed and de-chlorinated by the fungus. Our results indicate tolerance of white rot fungi against excessive oxidative stress and wood-derived, growth-inhibiting and harmful agents.
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Affiliation(s)
- Eero Kiviniemi
- Department of Microbiology, Faculty of Agriculture and Forestry, Viikki Campus, University of Helsinki, Helsinki, Finland
| | - Arttu Mikkola
- Department of Microbiology, Faculty of Agriculture and Forestry, Viikki Campus, University of Helsinki, Helsinki, Finland
| | | | - Matti Wahlsten
- Department of Microbiology, Faculty of Agriculture and Forestry, Viikki Campus, University of Helsinki, Helsinki, Finland
| | - Taina Lundell
- Department of Microbiology, Faculty of Agriculture and Forestry, Viikki Campus, University of Helsinki, Helsinki, Finland
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Sahu PK, Jayalakshmi K, Tilgam J, Gupta A, Nagaraju Y, Kumar A, Hamid S, Singh HV, Minkina T, Rajput VD, Rajawat MVS. ROS generated from biotic stress: Effects on plants and alleviation by endophytic microbes. FRONTIERS IN PLANT SCIENCE 2022; 13:1042936. [PMID: 36352882 PMCID: PMC9638130 DOI: 10.3389/fpls.2022.1042936] [Citation(s) in RCA: 54] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 10/03/2022] [Indexed: 05/26/2023]
Abstract
Aerobic living is thought to generate reactive oxygen species (ROS), which are an inevitable chemical component. They are produced exclusively in cellular compartments in aerobic metabolism involving significant energy transfer and are regarded as by-products. ROS have a significant role in plant response to pathogenic stress, but the pattern varies between necrotrophs and biotrophs. A fine-tuned systemic induction system is involved in ROS-mediated disease development in plants. In regulated concentrations, ROS act as a signaling molecule and activate different pathways to suppress the pathogens. However, an excess of these ROS is deleterious to the plant system. Along with altering cell structure, ROS cause a variety of physiological reactions in plants that lower plant yield. ROS also degrade proteins, enzymes, nucleic acids, and other substances. Plants have their own mechanisms to overcome excess ROS and maintain homeostasis. Microbes, especially endophytes, have been reported to maintain ROS homeostasis in both biotic and abiotic stresses by multiple mechanisms. Endophytes themselves produce antioxidant compounds and also induce host plant machinery to supplement ROS scavenging. The structured reviews on how endophytes play a role in ROS homeostasis under biotic stress were very meager, so an attempt was made to compile the recent developments in ROS homeostasis using endophytes. This review deals with ROS production, mechanisms involved in ROS signaling, host plant mechanisms in alleviating oxidative stress, and the roles of endophytes in maintaining ROS homeostasis under biotic stress.
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Affiliation(s)
- Pramod Kumar Sahu
- Indian Council of Agricultural Research (ICAR)-National Bureau of Agriculturally Important Microorganisms, Uttar Pradesh, India
| | - K. Jayalakshmi
- Plant Pathology, Indian Council of Agricultural Research (ICAR)-Directorate of Onion Garlic Research, Maharashtra, India
| | - Jyotsana Tilgam
- Indian Council of Agricultural Research (ICAR)-National Bureau of Agriculturally Important Microorganisms, Uttar Pradesh, India
| | - Amrita Gupta
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow, India
| | - Yalavarthi Nagaraju
- Indian Council of Agricultural Research (ICAR)-National Bureau of Agriculturally Important Microorganisms, Uttar Pradesh, India
| | - Adarsh Kumar
- Indian Council of Agricultural Research (ICAR)-National Bureau of Agriculturally Important Microorganisms, Uttar Pradesh, India
| | | | - Harsh Vardhan Singh
- Indian Council of Agricultural Research (ICAR)-National Bureau of Agriculturally Important Microorganisms, Uttar Pradesh, India
| | - Tatiana Minkina
- Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don, Russia
| | - Vishnu D. Rajput
- Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don, Russia
| | - Mahendra Vikram Singh Rajawat
- Indian Council of Agricultural Research (ICAR)-National Bureau of Agriculturally Important Microorganisms, Uttar Pradesh, India
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Metabolic Diversity of Xylariaceous Fungi Associated with Leaf Litter Decomposition. J Fungi (Basel) 2022; 8:jof8070701. [PMID: 35887457 PMCID: PMC9324366 DOI: 10.3390/jof8070701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Revised: 06/20/2022] [Accepted: 06/28/2022] [Indexed: 11/23/2022] Open
Abstract
Fungi in the family Xylariaceae are primary agents of leaf litter decomposition. However, the diversity of carbon source utilization by xylariaceous fungi and the relative effects on this from environmental and phylogenetic factors are largely unknown. This study assessed the metabolic diversity and redundancy of xylariaceous fungi, associated with leaf litter decomposition, by measuring their in vitro capacity to utilize multiple carbon sources. The work identified the relative influences of geographic and climatic sources, as well as the taxonomic and phylogenetic relatedness, of the fungi. Using Biolog EcoPlateTM, 43 isolates belonging to Nemania, Xylaria, Nodulisporium, Astrocystis, and Hypoxylon, isolated from Castanopsis sieboldii leaf litter at eight sites in Japan, were found to have the capacity to utilize a variety of carbohydrates, amino acids/amines, carboxylic acids, and polymers. The genera of xylariaceous fungi and their origins significantly affected their metabolic diversity and utilization of carbon sources. Variation partitioning demonstrated that dissimilarities in carbon utilization among fungal isolates were mostly attributable to site differences, especially climatic factors: mean annual temperature and precipitation, and maximum snow depth. Moreover, xylariaceous isolates that originated from adjacent sites tended to have similar patterns of carbon source utilization, suggesting metabolic acclimation to local environmental conditions.
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Estimation of biological effect of Cu-64 radiopharmaceuticals with Geant4-DNA simulation. Sci Rep 2022; 12:8957. [PMID: 35624130 PMCID: PMC9142517 DOI: 10.1038/s41598-022-13096-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Accepted: 05/05/2022] [Indexed: 11/24/2022] Open
Abstract
The aim of this work is to estimate the biological effect of targeted radionuclide therapy using Cu-64, which is a well-known Auger electron emitter. To do so, we evaluate the absorbed dose of emitted particles from Cu-64 using the Geant4-DNA Monte Carlo simulation toolkit. The contribution of beta particles to the absorbed dose is higher than that of Auger electrons. The simulation result agrees with experimental ones evaluated using coumarin-3-carboxylic acid chemical dosimeter. The simulation result is also in good agreement with previous ones obtained using fluorescent nuclear track detector. From the results of present simulation (i.e., absorbed dose estimation) and previous biological experiments using two cell lines (i.e., evaluation of survival curves), we have estimated the relative biological effectiveness (RBE) of Cu-64 emitted particles on CHO wild-type cells and xrs5 cells. The RBE of xrs5 cells exposed to Cu-64 is almost equivalent to that with gamma rays and protons and C ions. This result indicates that the radiosensitivity of xrs5 cells is independent of LET. In comparison to this, the RBE on CHO wild-type cells exposed to Cu-64 is significantly higher than gamma rays and almost equivalent to that irradiated with C ions with a linear energy transfer of 70 keV/μm.
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Kusumoto T, Kitamura H, Hojo S, Konishi T, Kodaira S. Significant changes in yields of 7-hydroxy-coumarin-3-carboxylic acid produced under FLASH radiotherapy conditions. RSC Adv 2020; 10:38709-38714. [PMID: 35517542 PMCID: PMC9057355 DOI: 10.1039/d0ra07999e] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Accepted: 09/27/2020] [Indexed: 12/15/2022] Open
Abstract
FLASH radiotherapy appears to kill off tumor cells while sparing healthy tissues, by irradiation at ultra high dose rate (>40 Gy s−1). The present study aims to clarify the mechanism of the sparing effect by proton irradiation under the FLASH conditions from a viewpoint of radiation chemistry. To do so, we evaluate radiation chemical yields (G values) of 7-hydroxy-coumarin-3-carboxylic acid (7OH–C3CA), which is produced by water radiolysis using coumarin-3-carboxylic acid (C3CA) solution as a radical scavenger of hydroxyl radicals. We shoot 27.5 MeV protons in the dose rate ranging from 0.05 to 160 Gy s−1. The recombination process of hydroxyl radicals produced is followed by varying the concentration of C3CA from 0.2 to 20 mM, which corresponds to the scavenging time scale from 7.1 to 714 ns. The G value of 7OH–C3CA produced decreases with increasing dose rate on the same scavenging time scale. Additionally, the trend of the relative G value normalized at a scavenging time scale of 100 ns, where radical–radical reaction subsides, is consistent in the examined dose rate range. This finding implies that G values of 7OH–C3CA produced reduce with increasing dose rate due to the oxygen depletion. We experimentally present that the sparing effect for healthy tissues would be seen even with a proton beam under the FLASH conditions due to the depletion of oxygen. Yield of 7-hydroxy-coumarin-3-carboxylic acid (7OH–C3CA) significantly decreases at FLASH condition with the dose rate of >40 Gy s−1, compared to that at conventional condition of 0.05 Gy s−1, due to the oxygen depletion in the solution.![]()
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Affiliation(s)
- Tamon Kusumoto
- National Institutes for Quantum and Radiological Science and Technology 4-9-1 Anagawa, Inage-ku 263-8555 Chiba Japan
| | - Hisashi Kitamura
- National Institutes for Quantum and Radiological Science and Technology 4-9-1 Anagawa, Inage-ku 263-8555 Chiba Japan
| | - Satoru Hojo
- National Institutes for Quantum and Radiological Science and Technology 4-9-1 Anagawa, Inage-ku 263-8555 Chiba Japan
| | - Teruaki Konishi
- National Institutes for Quantum and Radiological Science and Technology 4-9-1 Anagawa, Inage-ku 263-8555 Chiba Japan
| | - Satoshi Kodaira
- National Institutes for Quantum and Radiological Science and Technology 4-9-1 Anagawa, Inage-ku 263-8555 Chiba Japan
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Evaluating the mycostimulation potential of select carbon amendments for the degradation of a model PAH by an ascomycete strain enriched from a superfund site. Biodegradation 2018; 29:463-471. [PMID: 30003496 DOI: 10.1007/s10532-018-9843-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Accepted: 06/29/2018] [Indexed: 12/23/2022]
Abstract
Although ecological flexibility has been well documented in fungi, it remains unclear how this flexibility can be exploited for pollutant degradation, especially in the Ascomycota phylum. In this work, we assess three mycostimulation amendments for their ability to induce degradation in Trichoderma harzanium, a model fungus previously isolated from a Superfund site contaminated with polycyclic aromatic hydrocarbons. The amendments used in the present study were selected based on the documented ecological roles of ascomycetes. Chitin was selected to simulate the parasitic ecological role while cellulose and wood were selected to mimic bulk soil and wood saprobic conditions, respectively. Each amendment was tested in liquid basal medium in 0.1 and 1% (w/v) suspensions. Both chitin and cellulose amendments were shown to promote anthracene degradation in T. harzanium with the 0.1% chitin amendment resulting in over 90% removal of anthracene. None of the targets monitored for gene expression were found to be upregulated suggesting alternate pathways may be used in T. harzanium. Overall, our data suggest that mycostimulation amendments can be improved by understanding the ecological roles of indigenous fungi. However, further research is needed to better estimate specific amendment requirements for a broader group of target fungi and follow up studies are needed to determine whether the trends observed herein translate to more realistic soil systems.
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Ujor VC, Adukwu EC, Okonkwo CC. Fungal wars: The underlying molecular repertoires of combating mycelia. Fungal Biol 2018; 122:191-202. [PMID: 29551193 DOI: 10.1016/j.funbio.2018.01.001] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Revised: 01/05/2018] [Accepted: 01/06/2018] [Indexed: 10/18/2022]
Abstract
Non-self contact between fungi elicits strong morphological and biochemical reactions in the mycelia of interacting species. Although these reactions appear to be species- and interaction-specific, some responses such as pigmentation, increased secretion of phenol-oxidases, barrage formation and sealing of the mycelia front are common responses in most interactions. Hence, some species recruit similar molecular machineries in response to non-self. Increasing number of fully sequenced and annotated fungal genomes and advances in genome-wide and global proteome analytical tools now allow researchers to use techniques such as RNA sequencing, micro and macroarray analysis, 2-dimensional protein gel profiling, and differential display of mRNA to probe the underlying molecular mechanisms of combative mycelial interactions. This review provides an overview of the genes and proteins found to be differentially expressed in conflicting fungal mycelia by the use of 'omics' tools. Connections between observed gene and protein repertoires of competing mycelia and the attendant morphological and biochemical changes are presented.
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Affiliation(s)
- Victor C Ujor
- Bioenergy and Biological Waste Management Program, Agricultural Technical Institute, The Ohio State University, 1328 Dover Road, Wooster, OH, USA.
| | - Emmanuel C Adukwu
- Department of Applied Sciences, University of the West of England, Frenchay Campus, Cold Harbour Lane, Bristol, BS16 1QY, United Kingdom
| | - Christopher C Okonkwo
- Department of Animal Sciences, The Ohio State University, Ohio Agricultural Research and Development Center, 1680 Madison Avenue, Wooster, OH, 44691, USA
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Zhu Y, Xue J, Cao J, Xiao H. A potential mechanism for degradation of 4,5-dichloro-2-(n-octyl)-3[2H]-isothiazolone (DCOIT) by brown-rot fungus Gloeophyllum trabeum. JOURNAL OF HAZARDOUS MATERIALS 2017; 337:72-79. [PMID: 28505510 DOI: 10.1016/j.jhazmat.2017.04.072] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2016] [Revised: 04/27/2017] [Accepted: 04/28/2017] [Indexed: 06/07/2023]
Abstract
This study aims to investigate the biodegradation of 4,5-dichloro-2-(n-octyl)-3[2H]-isothiazolone (DCOIT) by a brown-rot fungus Gloeophyllum trabeum as well as the involved mechanism. In the present study, the retentions of DCOIT in treated Masson pine (Pinus massoniana) (MP) chips were determined periodically after incubation with G. trabeum. Then a Fenton-like reaction, known as the chelator-mediated Fenton (CMF) chemistry was used to degrade DCOIT that mimics the degradation pathway of DCOIT by typical brown-rot fungi, and the degradation intermediates were further analyzed. The results demonstrated that DCOIT was rapidly depleted in the early stages of incubation by G. trabeum. The CMF treatment was shown to oxidatively decompose DCOIT by producing reactive oxygen species. This evidence suggests that the CMF chemistry employed by brown-rot fungi contributes to the rapid depletion of DCOIT during G. trabeum exposure, although this does not rule out other possible mechanisms for the biodegradation of DCOIT. The new findings give new insights into the mechanism for the biodegradation of organic biocides, and potentially provide an efficient approach for the removal of organic pollutants in the contaminated water.
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Affiliation(s)
- Yuan Zhu
- MOE Key Laboratory of Wooden Material Science and Application, Beijing Forestry University, Qinghua East Road 35, Haidian, Beijing, 100083, China
| | - Jing Xue
- MOE Key Laboratory of Wooden Material Science and Application, Beijing Forestry University, Qinghua East Road 35, Haidian, Beijing, 100083, China
| | - Jinzhen Cao
- MOE Key Laboratory of Wooden Material Science and Application, Beijing Forestry University, Qinghua East Road 35, Haidian, Beijing, 100083, China.
| | - Hongzhan Xiao
- Beijing Institute of Microchemistry, Xinjiangongmen Road 15, Haidian, Beijing, 100091, China
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9
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10
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Abstract
Decomposer fungi continually deplete the organic resources they inhabit, so successful colonization of new resources is a crucial part of their ecology. Colonization success can be split into (i) the ability to arrive at, gain entry into, and establish within a resource and (ii) the ability to persist within the resource until reproduction and dissemination. Fungi vary in their life history strategies, the three main drivers of which are stress (S-selected), disturbance (ruderal, or R-selected), and incidence of competitors (C-selected); however, fungi often have combinations of characteristics from different strategies. Arrival at a new resource may occur as spores or mycelium, with successful entry and establishment (primary resource capture) within the resource largely dependent on the enzymatic ability of the fungus. The communities that develop in a newly available resource depend on environmental conditions and, in particular, the levels of abiotic stress present (e.g., high temperature, low water availability). Community change occurs when these initial colonizers are replaced by species that are either more combative (secondary resource capture) or better able to tolerate conditions within the resource, either through changing abiotic conditions or due to modification of the resource by the initial colonizers. Competition for territory may involve highly specialized species-specific interactions such as mycoparasitism or may be more general; in both cases combat involves changes in morphology, metabolism, and reactive oxygen species production, and outcomes of these interactions can be altered under different environmental conditions. In summary, community development is not a simple ordered sequence, but a complex ever-changing mosaic.
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11
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Liu S, Zhao J, Zhang K, Yang L, Sun M, Yu H, Yan Y, Zhang Y, Wu L, Wang S. Dual-emissive fluorescence measurements of hydroxyl radicals using a coumarin-activated silica nanohybrid probe. Analyst 2017; 141:2296-302. [PMID: 26958658 DOI: 10.1039/c5an02261d] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
This work reports a novel dual-emissive fluorescent probe based on dye hybrid silica nanoparticles for ratiometric measurement of the hydroxyl radical (˙OH). In the probe sensing system, the blue emission of coumarin dye (coumarin-3-carboxylic acid, CCA) immobilized on the nanoparticle surface is selectively enhanced by ˙OH due to the formation of a coumarin hydroxylation product with strong fluorescence, whereas the emission of red fluorescent dye encapsulated in the silica nanoparticle is insensitive to ˙OH as a self-referencing signal, and so the probe provides a good quantitative analysis based on ratiometric fluorescence measurement with a detection limit of 1.65 μM. Moreover, the probe also shows high selectivity for ˙OH determination against metal ions, other reactive oxygen species and biological species. More importantly, it exhibits low cytotoxicity and high biocompatibility in living cells, and has been successfully used for cellular imaging of ˙OH, showing its promising application for monitoring of intracellular ˙OH signaling events.
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Affiliation(s)
- Saisai Liu
- Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui 230031, China. and Department of Materials Science and Engineering, University of Science & Technology of China, Hefei, Anhui 230026, China and State Key Laboratory of Transducer Technology, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Jun Zhao
- Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui 230031, China. and State Key Laboratory of Transducer Technology, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Kui Zhang
- Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui 230031, China. and State Key Laboratory of Transducer Technology, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Lei Yang
- Department of Chemistry, University of North Carolina at Chapel Hill, CB 3290, Chapel Hill, NC 27599, USA
| | - Mingtai Sun
- Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui 230031, China. and State Key Laboratory of Transducer Technology, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Huan Yu
- Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui 230031, China. and State Key Laboratory of Transducer Technology, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Yehan Yan
- Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui 230031, China. and State Key Laboratory of Transducer Technology, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Yajun Zhang
- Key Laboratory of Ion Beam Bioengineering, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Lijun Wu
- Key Laboratory of Ion Beam Bioengineering, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Suhua Wang
- Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui 230031, China. and State Key Laboratory of Transducer Technology, Chinese Academy of Sciences, Hefei, Anhui 230031, China
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12
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Muturi EJ, Bara JJ, Rooney AP, Hansen AK. Midgut fungal and bacterial microbiota of Aedes triseriatus and Aedes japonicus shift in response to La Crosse virus infection. Mol Ecol 2016; 25:4075-90. [PMID: 27357374 DOI: 10.1111/mec.13741] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2016] [Revised: 05/10/2016] [Accepted: 06/27/2016] [Indexed: 01/20/2023]
Abstract
Understanding how midgut microbial communities of field-collected mosquitoes interact with pathogens is critical for controlling vector infection and disease. We used 16S rRNA and internal transcribed spacer sequencing to characterize the midgut bacterial and fungal communities of adult females of Aedes triseriatus and Aedes japonicus collected as pupae in tree holes, plastic bins and waste tires and their response to La Crosse virus (LACV) infection. For both mosquito species and across all habitat and virus treatments, a total of 62 bacterial operational taxonomic units (OTUs) from six phyla and 21 fungal OTUs from two phyla were identified. The majority of bacterial (92%) and fungal (71%) OTUs were shared between the mosquito species; however, several OTUs were unique to each species. Bacterial and fungal communities of individuals that took either infectious or noninfectious bloodmeals were less diverse and more homogeneous compared to those of newly emerged adults. Interestingly, LACV-infected A. triseriatus and A. japonicus had higher bacterial richness and lower fungal richness compared to individuals that took a noninfectious bloodmeal, suggesting that viral infection was associated with an increase in bacterial OTUs and a decrease in fungal OTUs. For both mosquito species, several OTUs were identified that had both high fidelity and specificity to mosquito midguts that were infected with LACV. Overall, these findings demonstrate that bacterial and fungal communities that reside in mosquito midguts respond to host diet and viral infection and could play a role in modulating vector susceptibility to LACV.
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Affiliation(s)
- Ephantus J Muturi
- Illinois Natural History Survey, University of Illinois at Urbana-Champaign, 1816 S. Oak St., Champaign, IL, 61820, USA
| | - Jeffrey J Bara
- Illinois Natural History Survey, University of Illinois at Urbana-Champaign, 1816 S. Oak St., Champaign, IL, 61820, USA.,Department of Biology, University of Louisville, Louisville, KY, 40292, USA
| | - Alejandro P Rooney
- Crop Bioprotection Research Unit, USDA, ARS, 1815 N. University St., Peoria, IL, 61604, USA
| | - Allison K Hansen
- Department of Entomology, University of Illinois at Urbana-Champaign, 505 S. Goodwin Ave., Urbana, IL, 61801, USA
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13
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Aquatic fungi: targeting the forgotten in microbial ecology. Curr Opin Microbiol 2016; 31:140-145. [DOI: 10.1016/j.mib.2016.03.016] [Citation(s) in RCA: 83] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Revised: 03/29/2016] [Accepted: 03/30/2016] [Indexed: 02/02/2023]
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14
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Yamashita S, Baldacchino G, Maeyama T, Taguchi M, Muroya Y, Lin M, Kimura A, Murakami T, Katsumura Y. Mechanism of radiation-induced reactions in aqueous solution of coumarin-3-carboxylic acid: Effects of concentration, gas and additive on fluorescent product yield. Free Radic Res 2012; 46:861-71. [DOI: 10.3109/10715762.2012.684879] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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15
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Snajdr J, Dobiášová P, Větrovský T, Valášková V, Alawi A, Boddy L, Baldrian P. Saprotrophic basidiomycete mycelia and their interspecific interactions affect the spatial distribution of extracellular enzymes in soil. FEMS Microbiol Ecol 2011; 78:80-90. [PMID: 21539585 DOI: 10.1111/j.1574-6941.2011.01123.x] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
Abstract
Saprotrophic cord-forming basidiomycetes are important decomposers of lignocellulosic substrates in soil. The production of extracellular hydrolytic enzymes was studied during the growth of two saprotrophic basidiomycetes, Hypholoma fasciculare and Phanerochaete velutina, across the surface of nonsterile soil microcosms, along with the effects of these basidiomycetes on fungi and bacteria within the soil. Higher activities of α-glucosidase, β-glucosidase, cellobiohydrolase, β-xylosidase, phosphomonoesterase and phosphodiesterase, but not of arylsulphatase, were recorded beneath the mycelia. Despite the fact that H. fasciculare, with exploitative hyphal growth, produced much denser hyphal cover on the soil surface than P. velutina, with explorative growth, both fungi produced similar amounts of extracellular enzymes. In the areas where the mycelia of H. fasciculare and P. velutina interacted, the activities of N-acetylglucosaminidase, α-glucosidase and phosphomonoesterase, the enzymes potentially involved in hyphal cell wall damage, and the utilization of compounds released from damaged hyphae of interacting fungi, were particularly increased. No significant differences in fungal biomass were observed between basidiomycete-colonized and noncolonized soil, but bacterial biomass was reduced in soil with H. fasciculare. The increases in the activities of β-xylosidase, β-glucosidase, phosphomonoesterase and cellobiohydrolase with increasing fungal:bacterial biomass ratio indicate the positive effects of fungal enzymes on nutrient release and bacterial abundance, which is reflected in the positive correlation of bacterial and fungal biomass content.
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Affiliation(s)
- Jaroslav Snajdr
- Laboratory of Environmental Microbiology, Institute of Microbiology of the ASCR, Prague, Czech Republic
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16
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Production of a fluorescence probe in ion-beam radiolysis of aqueous coumarin-3-carboxylic acid solution—1: Beam quality and concentration dependences. Radiat Phys Chem Oxf Engl 1993 2011. [DOI: 10.1016/j.radphyschem.2010.11.013] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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17
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Acevedo F, Pizzul L, Castillo MDP, Cuevas R, Diez MC. Degradation of polycyclic aromatic hydrocarbons by the Chilean white-rot fungus Anthracophyllum discolor. JOURNAL OF HAZARDOUS MATERIALS 2011; 185:212-9. [PMID: 20934253 DOI: 10.1016/j.jhazmat.2010.09.020] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2010] [Revised: 07/13/2010] [Accepted: 09/06/2010] [Indexed: 05/24/2023]
Abstract
The degradation of three- and four-ring polycyclic aromatic hydrocarbons (PAHs) in Kirk medium by Anthracophyllum discolor, a white-rot fungus isolated from the forest of southern Chile, was evaluated. In addition, the removal efficiency of three-, four- and five-ring PAHs in contaminated soil bioaugmented with A. discolor in the absence and presence of indigenous soil microorganisms was investigated. Production of lignin-degrading enzymes and PAH mineralization in the soil were also determined. A. discolor was able to degrade PAHs in Kirk medium with the highest removal occurring in a PAH mixture, suggesting synergistic effects between PAHs or possible cometabolism. A high removal capability for phenanthrene (62%), anthracene (73%), fluoranthene (54%), pyrene (60%) and benzo(a)pyrene (75%) was observed in autoclaved soil inoculated with A. discolor in the absence of indigenous microorganisms, associated with the production of manganese peroxidase (MnP). The metabolites found in the PAH degradation were anthraquinone, phthalic acid, 4-hydroxy-9-fluorenone, 9-fluorenone and 4,5-dihydropyrene. A. discolor was able to mineralize 9% of the phenanthrene. In non-autoclaved soil, the inoculation with A. discolor did not improve the removal efficiency of PAHs. Suitable conditions must be found to promote a successful fungal bioaugmentation in non-autoclaved soils.
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Affiliation(s)
- Francisca Acevedo
- Programa de Doctorado en Ciencias de Recursos Naturales, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile
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de Boer W, Folman LB, Klein Gunnewiek PJ, Svensson T, Bastviken D, Öberg G, del Rio JC, Boddy L. Mechanism of antibacterial activity of the white-rot fungus Hypholoma fasciculare colonizing wood. Can J Microbiol 2010; 56:380-8. [DOI: 10.1139/w10-023] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
In a previous study it was shown that the number of wood-inhabiting bacteria was drastically reduced after colonization of beech ( Fagus sylvatica ) wood blocks by the white-rot fungus Hypholoma fasciculare , or sulfur tuft ( Folman et al. 2008 ). Here we report on the mechanisms of this fungal-induced antibacterial activity. Hypholoma fasciculare was allowed to invade beech and pine ( Pinus sylvestris ) wood blocks that had been precolonized by microorganisms from forest soil. The changes in the number of bacteria, fungal biomass, and fungal-related wood properties were followed for 23 weeks. Colonization by the fungus resulted in a rapid and large reduction in the number of bacteria (colony-forming units), which was already apparent after 4 weeks of incubation. The reduction in the number of bacteria coincided with fungal-induced acidification in both beech and pine wood blocks. No evidence was found for the involvement of toxic secondary metabolites or reactive oxygen species in the reduction of the number of bacteria. Additional experiments showed that the dominant bacteria present in the wood blocks were not able to grow under the acidic conditions (pH 3.5) created by the fungus. Hence our research pointed at rapid acidification as the major factor causing reduction of wood-inhabiting bacteria upon colonization of wood by H. fasciculare.
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Affiliation(s)
- Wietse de Boer
- Netherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, Boterhoeksestraat 48, Heteren 6666 GA, Netherlands
- Water and Environmental Studies, Department of Thematic Studies, Linköping University, Linköping 58183, Sweden
- Institute for Resources, Environment, and Sustainability (IRES) and Soil, Water, and Environmental Laboratory (SWEL), The University of British Columbia, 429-2202 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, P.O. Box 1052, Seville 41080, Spain
- Cardiff School of Biosciences, Cardiff University, Biomedical Building, Museum Avenue, Cardiff, Wales CF10 3AX, UK
| | - Larissa B. Folman
- Netherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, Boterhoeksestraat 48, Heteren 6666 GA, Netherlands
- Water and Environmental Studies, Department of Thematic Studies, Linköping University, Linköping 58183, Sweden
- Institute for Resources, Environment, and Sustainability (IRES) and Soil, Water, and Environmental Laboratory (SWEL), The University of British Columbia, 429-2202 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, P.O. Box 1052, Seville 41080, Spain
- Cardiff School of Biosciences, Cardiff University, Biomedical Building, Museum Avenue, Cardiff, Wales CF10 3AX, UK
| | - Paulien J.A. Klein Gunnewiek
- Netherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, Boterhoeksestraat 48, Heteren 6666 GA, Netherlands
- Water and Environmental Studies, Department of Thematic Studies, Linköping University, Linköping 58183, Sweden
- Institute for Resources, Environment, and Sustainability (IRES) and Soil, Water, and Environmental Laboratory (SWEL), The University of British Columbia, 429-2202 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, P.O. Box 1052, Seville 41080, Spain
- Cardiff School of Biosciences, Cardiff University, Biomedical Building, Museum Avenue, Cardiff, Wales CF10 3AX, UK
| | - Teresia Svensson
- Netherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, Boterhoeksestraat 48, Heteren 6666 GA, Netherlands
- Water and Environmental Studies, Department of Thematic Studies, Linköping University, Linköping 58183, Sweden
- Institute for Resources, Environment, and Sustainability (IRES) and Soil, Water, and Environmental Laboratory (SWEL), The University of British Columbia, 429-2202 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, P.O. Box 1052, Seville 41080, Spain
- Cardiff School of Biosciences, Cardiff University, Biomedical Building, Museum Avenue, Cardiff, Wales CF10 3AX, UK
| | - David Bastviken
- Netherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, Boterhoeksestraat 48, Heteren 6666 GA, Netherlands
- Water and Environmental Studies, Department of Thematic Studies, Linköping University, Linköping 58183, Sweden
- Institute for Resources, Environment, and Sustainability (IRES) and Soil, Water, and Environmental Laboratory (SWEL), The University of British Columbia, 429-2202 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, P.O. Box 1052, Seville 41080, Spain
- Cardiff School of Biosciences, Cardiff University, Biomedical Building, Museum Avenue, Cardiff, Wales CF10 3AX, UK
| | - Gunilla Öberg
- Netherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, Boterhoeksestraat 48, Heteren 6666 GA, Netherlands
- Water and Environmental Studies, Department of Thematic Studies, Linköping University, Linköping 58183, Sweden
- Institute for Resources, Environment, and Sustainability (IRES) and Soil, Water, and Environmental Laboratory (SWEL), The University of British Columbia, 429-2202 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, P.O. Box 1052, Seville 41080, Spain
- Cardiff School of Biosciences, Cardiff University, Biomedical Building, Museum Avenue, Cardiff, Wales CF10 3AX, UK
| | - José C. del Rio
- Netherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, Boterhoeksestraat 48, Heteren 6666 GA, Netherlands
- Water and Environmental Studies, Department of Thematic Studies, Linköping University, Linköping 58183, Sweden
- Institute for Resources, Environment, and Sustainability (IRES) and Soil, Water, and Environmental Laboratory (SWEL), The University of British Columbia, 429-2202 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, P.O. Box 1052, Seville 41080, Spain
- Cardiff School of Biosciences, Cardiff University, Biomedical Building, Museum Avenue, Cardiff, Wales CF10 3AX, UK
| | - Lynne Boddy
- Netherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, Boterhoeksestraat 48, Heteren 6666 GA, Netherlands
- Water and Environmental Studies, Department of Thematic Studies, Linköping University, Linköping 58183, Sweden
- Institute for Resources, Environment, and Sustainability (IRES) and Soil, Water, and Environmental Laboratory (SWEL), The University of British Columbia, 429-2202 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, P.O. Box 1052, Seville 41080, Spain
- Cardiff School of Biosciences, Cardiff University, Biomedical Building, Museum Avenue, Cardiff, Wales CF10 3AX, UK
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Hiscox J, Baldrian P, Rogers HJ, Boddy L. Changes in oxidative enzyme activity during interspecific mycelial interactions involving the white-rot fungus Trametes versicolor. Fungal Genet Biol 2010; 47:562-71. [PMID: 20371297 DOI: 10.1016/j.fgb.2010.03.007] [Citation(s) in RCA: 83] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2010] [Revised: 03/16/2010] [Accepted: 03/21/2010] [Indexed: 11/29/2022]
Abstract
Interspecific fungal antagonism leads to biochemical changes in competing mycelia, including up-regulation of oxidative enzymes. Laccase, manganese peroxidase (MnP), manganese-repressed peroxidase (MRP) and lignin peroxidase (LiP) gene expression and enzyme activity were compared during agar interactions between Trametes versicolor and five other wood decay fungi resulting in a range of interaction outcomes from deadlock to replacement of one fungus by another. Increased laccase and Mn-oxidising activities were detected at all interaction zones, but there were few changes in activity in regions away from the interaction zone in T. versicolor mycelia compared to self-pairings. Whilst no LiP activity was detected in any pairing, low level LiP gene expression was detected. MnP activity was detected but not expression of MnP genes; instead, MRP could explain the observed activity. No relationship was found between extent of enzyme activity increase and interaction outcome. Similarities between patterns of gene expression and enzyme activity are discussed.
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Affiliation(s)
- Jennifer Hiscox
- BIOSI 2, Cardiff University, King Edward VII Avenue, Cardiff, UK.
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Determination of the time-dependent OH-yield by using a fluorescent probe. Application to heavy ion irradiation. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2008.12.006] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Folman LB, Klein Gunnewiek PJA, Boddy L, de Boer W. Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil. FEMS Microbiol Ecol 2008; 63:181-91. [PMID: 18199083 DOI: 10.1111/j.1574-6941.2007.00425.x] [Citation(s) in RCA: 102] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
Abstract
White-rot fungi are important wood-decomposing organisms in forest ecosystems. Their ability to colonize and decompose woody resources may be strongly influenced by wood-inhabiting bacteria that grow on easily utilizable compounds e.g. oligomers of wood-polymers released by fungal enzymes. However, so far, it is not known how white-rot fungi deal with the presence of potential competing bacteria. Here, the effects of two white-rot fungi, Hypholoma fasciculare and Resinicium bicolor, on the numbers and composition of bacteria colonizing sterile beech wood blocks from forest soil are reported. Both total numbers (microscopic counts) and the numbers of cultivable wood-inhabiting bacteria were considerably lower in wood blocks that became colonized by the white-rot fungi than in control blocks. This points to the fungi out-competing the opportunistic bacteria. The presence of white-rot fungi resulted in a change in the relative abundance of families of cultivable bacteria in wood and also in a change of denaturing gradient gel electrophoresis patterns of directly amplified 16S rRNA gene fragments. Analysis of the bacterial community structure in soil adhering to exploratory mycelium (cords) indicated that fungal species-specific effects on bacterial community composition were also apparent in this fungal growth phase.
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Affiliation(s)
- Larissa B Folman
- Department of Plant Microorganism Interactions, NIOO-Centre for Terrestrial Ecology, ZG Heteren, The Netherlands
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Baldrian P. Wood-inhabiting ligninolytic basidiomycetes in soils: Ecology and constraints for applicability in bioremediation. FUNGAL ECOL 2008. [DOI: 10.1016/j.funeco.2008.02.001] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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23
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Tang B, Zhang N, Chen Z, Xu K, Zhuo L, An L, Yang G. Probing Hydroxyl Radicals and Their Imaging in Living Cells by Use of FAM–DNA–Au Nanoparticles. Chemistry 2008; 14:522-8. [DOI: 10.1002/chem.200700455] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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de Boer W, van der Wal A. Chapter 8 Interactions between saprotrophic basidiomycetes and bacteria. BRITISH MYCOLOGICAL SOCIETY SYMPOSIA SERIES 2008. [DOI: 10.1016/s0275-0287(08)80010-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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25
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Gessler NN, Aver’yanov AA, Belozerskaya TA. Reactive oxygen species in regulation of fungal development. BIOCHEMISTRY (MOSCOW) 2007; 72:1091-109. [DOI: 10.1134/s0006297907100070] [Citation(s) in RCA: 117] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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Singh A, Chen K, Adelstein SJ, Kassis AI. Synthesis of Coumarin–Polyamine-Based Molecular Probe for the Detection of Hydroxyl Radicals Generated by Gamma Radiation. Radiat Res 2007; 168:233-42. [PMID: 17638412 DOI: 10.1667/rr0948.1] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2007] [Accepted: 03/15/2007] [Indexed: 11/03/2022]
Abstract
To develop a molecular probe for detection of hydroxyl radicals in the vicinity of DNA, the coumarin-polyamine complexes, N(1),N(12)-bis[2-oxo-2H-chromene-3-carbonyl]-1,12-diamine-4,9-diazadodecane (5) and tris[2-(2-oxo-2H-chromene-3-carboxamido)ethyl]amine (7), and their hydroxylated derivatives, N(1),N(12)-bis[7-hydroxy-2-oxo-2H-chromene-3-carbonyl]-1,12-diamine-4,9-diazadodecane (6) and tris[2-(7-hydroxy-2-oxo-2H-chromene-3-carboxamido)ethyl]amine (8), have been synthesized. Using computer-generated molecular modeling, the derivatives have been docked onto DNA dodecamer d(CGCGAATTCGCG)(2), the ligand-DNA complexes have been minimized, and the free binding energies (DeltaG(binding)) and inhibition constants (K(i)) have been calculated. Compound 7 is not water-soluble at the concentrations required for the project. When aqueous solutions of 5 are irradiated with gamma rays, the relationship between induced fluorescence and dose is linear in the range of 0 to 10 Gy. The fluorescence emission spectrum of irradiated 5 is similar to that of its dihydroxy derivative 6, indicating conversion of 5 to 6, and induction of fluorescence records formation of hydroxyl radicals in aqueous solution. The dicoumarin-polyamine 5, a novel compound for the detection of hydroxyl radicals close to DNA, is a sensitive and quantitative probe with potential for applications in biological systems.
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Affiliation(s)
- Amarjit Singh
- Department of Radiology, Harvard Medical School, Boston, MA 02115, USA
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Rahmawati N, Ohashi Y, Watanabe T, Honda Y, Watanabe T. Ceriporic Acid B, an Extracellular Metabolite of Ceriporiopsis subvermispora, Suppresses the Depolymerization of Cellulose by the Fenton Reaction. Biomacromolecules 2005; 6:2851-6. [PMID: 16153127 DOI: 10.1021/bm050358t] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The white rot fungus, Ceriporiopsis subvermispora, is able to degrade lignin in wood without intensive damage to cellulose. Since lignin biodegradation by white rot fungi proceeds by radical reactions, accompanied by the production of a large amount of Fe3+-reductant phenols and reductive radical species in the presence of iron ions, molecular oxygen, and H2O2, C. subvermispora has been proposed to possess a biological system which suppresses the production of a cellulolytic active oxygen species, *OH, by the Fenton reaction. In the present paper, we demonstrate that 1-nonadecene-2,3-dicarboxylic acid (ceriporic acid B), an extracellular metabolite of C. subvermispora, strongly inhibited *OH production and the depolymerization of cellulose by the Fenton reaction in the presence of iron ions, cellulose, H2O2, and a reductant for Fe3+, hydroquinone (HQ), at the physiological pH of the fungus.
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Affiliation(s)
- Noor Rahmawati
- Laboratory of Biomass Conversion, Research Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan
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Boer WD, Folman LB, Summerbell RC, Boddy L. Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol Rev 2004; 29:795-811. [PMID: 16102603 DOI: 10.1016/j.femsre.2004.11.005] [Citation(s) in RCA: 729] [Impact Index Per Article: 34.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2004] [Revised: 10/07/2004] [Accepted: 11/19/2004] [Indexed: 11/19/2022] Open
Abstract
The colonization of land by plants appears to have coincided with the appearance of mycorrhiza-like fungi. Over evolutionary time, fungi have maintained their prominent role in the formation of mycorrhizal associations. In addition, however, they have been able to occupy other terrestrial niches of which the decomposition of recalcitrant organic matter is perhaps the most remarkable. This implies that, in contrast to that of aquatic organic matter decomposition, bacteria have not been able to monopolize decomposition processes in terrestrial ecosystems. The emergence of fungi in terrestrial ecosystems must have had a strong impact on the evolution of terrestrial bacteria. On the one hand, potential decomposition niches, e.g. lignin degradation, have been lost for bacteria, whereas on the other hand the presence of fungi has itself created new bacterial niches. Confrontation between bacteria and fungi is ongoing, and from studying contemporary interactions, we can learn about the impact that fungi presently have, and have had in the past, on the ecology and evolution of terrestrial bacteria. In the first part of this review, the focus is on niche differentiation between soil bacteria and fungi involved in the decomposition of plant-derived organic matter. Bacteria and fungi are seen to compete for simple plant-derived substrates and have developed antagonistic strategies. For more recalcitrant organic substrates, e.g. cellulose and lignin, both competitive and mutualistic strategies appear to have evolved. In the second part of the review, bacterial niches with respect to the utilization of fungal-derived substrates are considered. Here, several lines of development can be recognized, ranging from mutualistic exudate-consuming bacteria that are associated with fungal surfaces to endosymbiotic and mycophagous bacteria. In some cases, there are indications of fungal specific selection in fungus-associated bacteria, and possible mechanisms for such selection are discussed.
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Affiliation(s)
- Wietse de Boer
- NIOO-Centre for Terrestrial Ecology, Department of Plant Microorganism Interactions, Heteren, The Netherlands.
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Iakovlev A, Broberg A, Stenlid J. Fungal modification of the hydroxyl radical detector coumarin-3-carboxylic acid. FEMS Microbiol Ecol 2003; 46:197-202. [DOI: 10.1016/s0168-6496(03)00213-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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Cohen R, Jensen KA, Houtman CJ, Hammel KE. Significant levels of extracellular reactive oxygen species produced by brown rot basidiomycetes on cellulose. FEBS Lett 2002; 531:483-8. [PMID: 12435597 DOI: 10.1016/s0014-5793(02)03589-5] [Citation(s) in RCA: 67] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
It is often proposed that brown rot basidiomycetes use extracellular reactive oxygen species (ROS) to accomplish the initial depolymerization of cellulose in wood, but little evidence has been presented to show that the fungi produce these oxidants in physiologically relevant quantities. We used [(14)C]phenethyl polyacrylate as a radical trap to estimate extracellular ROS production by two brown rot fungi, Gloeophyllum trabeum and Postia placenta, that were degrading cellulose. Both fungi oxidized aromatic rings on the trap to give monohydroxylated and more polar products in significant yields. All of the cultures contained 2,5-dimethoxyhydroquinone, a fungal metabolite that has been shown to drive Fenton chemistry in vitro. These results show that extracellular ROS occur at significant levels in cellulose colonized by brown rot fungi, and suggest that hydroquinone-driven ROS production may contribute to decay by diverse brown rot species.
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Affiliation(s)
- Roni Cohen
- Department of Bacteriology, University of Wisconsin, Madison, WI 53706, USA
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