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Vaksmaa A, Polerecky L, Dombrowski N, Kienhuis MVM, Posthuma I, Gerritse J, Boekhout T, Niemann H. Polyethylene degradation and assimilation by the marine yeast Rhodotorula mucilaginosa. ISME COMMUNICATIONS 2023; 3:68. [PMID: 37423910 PMCID: PMC10330194 DOI: 10.1038/s43705-023-00267-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 05/16/2023] [Accepted: 05/26/2023] [Indexed: 07/11/2023]
Abstract
Ocean plastic pollution is a severe environmental problem but most of the plastic that has been released to the ocean since the 1950s is unaccounted for. Although fungal degradation of marine plastics has been suggested as a potential sink mechanism, unambiguous proof of plastic degradation by marine fungi, or other microbes, is scarce. Here we applied stable isotope tracing assays with 13C-labeled polyethylene to measure biodegradation rates and to trace the incorporation of plastic-derived carbon into individual cells of the yeast Rhodotorula mucilaginosa, which we isolated from the marine environment. 13C accumulation in the CO2 pool during 5-day incubation experiments with R. mucilaginosa and UV-irradiated 13C-labeled polyethylene as a sole energy and carbon source translated to degradation rates of 3.8% yr-1 of the initially added substrate. Furthermore, nanoSIMS measurements revealed substantial incorporation of polyethylene-derived carbon into fungal biomass. Our results demonstrate the potential of R. mucilaginosa to mineralize and assimilate carbon from plastics and suggest that fungal plastic degradation may be an important sink for polyethylene litter in the marine environment.
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Affiliation(s)
- Annika Vaksmaa
- Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands.
| | - Lubos Polerecky
- Department of Earth Sciences, Faculty of Geosciences, Utrecht University, Utrecht, The Netherlands
| | - Nina Dombrowski
- Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands
| | - Michiel V M Kienhuis
- Department of Earth Sciences, Faculty of Geosciences, Utrecht University, Utrecht, The Netherlands
| | - Ilsa Posthuma
- Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands
| | - Jan Gerritse
- Deltares, Unit Subsurface and Groundwater Systems, Utrecht, The Netherlands
| | - Teun Boekhout
- Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands
- Institute of Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, The Netherlands
- College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Helge Niemann
- Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands
- Department of Earth Sciences, Faculty of Geosciences, Utrecht University, Utrecht, The Netherlands
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Modi S, Yadav VK, Amari A, Osman H, Igwegbe CA, Fulekar MH. Nanobioremediation: a bacterial consortium-zinc oxide nanoparticle-based approach for the removal of methylene blue dye from wastewater. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023:10.1007/s11356-023-27507-y. [PMID: 37178290 DOI: 10.1007/s11356-023-27507-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Accepted: 05/04/2023] [Indexed: 05/15/2023]
Abstract
Industrial effluents carrying dyes are considered a major environmental threat in the present era. Methylene blue (MB) dye is one of the key dyes of the thiazine group of dyes. It is broadly used in medical, textile, and various fields and is well known for its carcinogenicity and methemoglobin nature. Bacterial and other microbes-mediated bioremediation is becoming an emerging and significant section for the treatment of wastewater. Isolated bacteria were used for the bioremediation and nanobioremediation of methylene blue dye under varying conditions and parameters. A comparative study was conducted for the remediation of methylene blue dye using bacterial consortium, potential bacteria (isolated by scale-up method), and potential bacteria within zinc oxide nanoparticles. The decolorizing ability of bacteria was analyzed by UV visible spectrophotometer after stirring and static incubation in different time intervals of the isolates. Growth parameters and environmental parameters which include pH, initial dye concentration, and dose of nanoparticles were optimized with the minimal salt medium. An enzyme assay study was also done to check the effect of dye and nanoparticles on bacterial growth and the mode of action of degradation. The authors found that potential bacteria within ZnO nanoparticles showed enhanced decolorization efficiency (95.46% at pH 8) due to the properties of nanoparticles. On the other hand, the decolorization of MB dye by potential bacteria and the bacterial consortium was about 89.08 and 76.3%, respectively, for a 10-ppm dye concentration. During the enzyme assays study, the highest activity was observed for phenol oxidase, nicotinamide adenine dinucleotide (NADH), 2,6-Dichloroindophenol(DCIP), and laccase for nutrient broth having MB dye, MB dye, and ZnO NPs, while no such change was observed for manganese peroxidase enzyme activity. Nanobioremediation is a promising approach to removing such pollutants from the environment.
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Affiliation(s)
- Shreya Modi
- School of Nanosciences, Central University of Gujarat, Gandhinagar, Gujarat, 382030, India
- Department of Microbiology, Shri Sarvajanik Science College, Hemchandracharya North Gujarat University, Patan, Gujarat, 384001, India
| | - Virendra Kumar Yadav
- Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, Gujarat, 384265, India.
| | - Abdelfattah Amari
- Department of Chemical Engineering, College of Engineering, King Khalid University, Abha, 61411, Saudi Arabia
| | - Haitham Osman
- Department of Chemical Engineering, College of Engineering, King Khalid University, Abha, 61411, Saudi Arabia
| | - Chinenye Adaobi Igwegbe
- Department of Chemical Engineering, Nnamdi Azikiwe University, P.M.B. 5025, Awka, 420218, Nigeria
| | - M H Fulekar
- Center of Research for Development, Parul University, Vadodara, Gujarat, 391760, India
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Nutraceutical Enrichment of Animal Feed by Filamentous Fungi Fermentation. FERMENTATION 2022. [DOI: 10.3390/fermentation8080402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
There is an urgent need for improvements in animal production, particularly for ruminants, such that more sustainable and efficient processes are developed for obtaining more nutritious and efficient feeds. Filamentous fungi can add value to residual plant biomass, and may also have the potential to produce metabolites and enrich plant biomasses used in animal nutrition, converting them into nutraceutical sources. Thus, in this work, filamentous fungal fermentation of ruminant feed biomasses commonly used in Brazil was performed, and the enrichment for bioactive metabolites was tested. For this, Fistulina hepatica, Ganoderma lucidum, Pleurotus pulmonarius, Panus lecomtei, and Aspergillus terreus were grown for 28 days on different substrates: starchy grains- (sorghum, oat, and corn), fibrous substrates (coast-cross, rice husk, and moringa plant) and protein-rich substrates (cottonseed cake and pigeon pea plant). Fermented substrates were evaluated for laccase activity, crude protein, β-glucan, and lovastatin content. The highest growth rate was observed for G. lucidum in oat substrate (OT-01) (0.708 ± 0.035 cm/day) and F. hepatica in oat + coast-cross + pigeon pea treatment (OT-10) (0.607 ± 0.012 cm/day). High laccase activity was observed for P. lecomtei grown in starchy grain + moringa + pigeon pea substrate, reaching an activity of 416.8 ± 20.28 U/g. A. terreus growth in ST-09 (sorghum + pigeon pea) showed higher protein (15.3 ± 0.46%), β-glucan (503.56 ± 8.6 mg/g) and lovastatin (1.10 ± 0.17 mg/g) content compared to untreated substrates. These results demonstrate that filamentous fungi are an alternative for nutraceutical enrichment of ruminant feed biomasses. To the best of our knowledge, this is the first report in which P. lecomtei and F. hepatica are evaluated for their ability to be cultivated in ruminant feed substrates from Brazil.
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Industrially Important Fungal Enzymes: Productions and Applications. Fungal Biol 2021. [DOI: 10.1007/978-3-030-68260-6_11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Zhao J, Wu QX, Cheng XD, Su T, Wang XH, Zhang WN, Lu YM, Chen Y. Biodegradation and detoxification of the triphenylmethane dye coomassie brilliant blue by the extracellular enzymes from mycelia of Lactarius deliciosus. Front Chem Sci Eng 2020. [DOI: 10.1007/s11705-020-1952-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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SOUSA MADC, COSTA LMAS, PEREIRA TS, ZIED DC, RINKER DL, DIAS ES. Enzyme activity and biochemical changes during production of Lentinula edodes (Berk.) Pegler. FOOD SCIENCE AND TECHNOLOGY 2019. [DOI: 10.1590/fst.38517] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Pandey RK, Tewari S, Tewari L. Lignolytic mushroom Lenzites elegans WDP2: Laccase production, characterization, and bioremediation of synthetic dyes. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2018; 158:50-58. [PMID: 29656164 DOI: 10.1016/j.ecoenv.2018.04.003] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2018] [Revised: 03/29/2018] [Accepted: 04/03/2018] [Indexed: 06/08/2023]
Abstract
A mycoremedial study was undertaken for decolourization of synthetic dyes using wood rot fungal culture Lenzites elegans WDP2. The culture was isolated from decaying wood as fruiting body, and identified on the basis of 5.8S ITS rRNA gene sequence analysis. Qualitative plate screening of culture showed extracellular laccase and lignin peroxidase production, while only laccase enzyme was produced in higher amount (156.793 Uml-1) in minimal salt broth medium containing glucose and veratryl alcohol. Laccase activity was increased up to 189.25 Uml-1 after optimization of laccase production by optimization of one variable at a time approach. Molecular characterization of laccase enzyme was done using SDS PAGE and Native PAGE based isozyme analyses. The culture was able to decolorize three synthetic dying compounds (congo red, Malachite green and brilliant green) in broth media, while showed very less decolourization in plate assay. The fungal culture varied in their dye decolourizing potential in broth culture, showing 92.77%, 21.27% and 98.8% maximum decolourization of brilliant green, malachite green and congo red respectively. The congo red dye was completely bio-absorbed by fungal culture within one month. The fungal decolourized broth also revealed the extracellular laccase activity; varied from 10 Uml-1 to 68.5 Uml-1 in all the three cases, supports the involvement of laccase enzyme in decolorization. Phase contrast microscopy clearly revealed bio-sorption of the dyes by fungal culture into the mycelium/spores in the photomicrographs.
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Affiliation(s)
- Raj Kumar Pandey
- Department of Microbiology, CBSH; G.B. Pant University of Agriculture and Technology Pantnagar, U. S. Nagar, Uttarakhand, India.
| | - Salil Tewari
- Department of Genetics and Plant Breeding, College of Agriculture; G.B. Pant University of Agriculture and Technology Pantnagar, U. S. Nagar, Uttarakhand, India
| | - Lakshmi Tewari
- Department of Microbiology, CBSH; G.B. Pant University of Agriculture and Technology Pantnagar, U. S. Nagar, Uttarakhand, India
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Santhi VS, Gupta A, Saranya S, Jebakumar SRD. A novel marine bacterium Isoptericola sp. JS-C42 with the ability to saccharifying the plant biomasses for the aid in cellulosic ethanol production. ACTA ACUST UNITED AC 2014; 1-2:8-14. [PMID: 28435797 PMCID: PMC5381695 DOI: 10.1016/j.btre.2014.05.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
The ever growing demands for food products such as starch and sugar produces; there is a need to find the sources for saccharification for cellulosic bioethanol production. This study provides the first evidence of the lignocellulolytic and saccharifying ability of a marine bacterium namely Isoptericola sp. JS-C42, a Gram positive actinobacterium with the cocci cells embedded on mycelia isolated from the Arabian Sea, India. It exhibited highest filter paper unit effect, endoglucanase, exoglucanase, cellobiohydrolase, β-glucosidase, xylanase and ligninase effect. The hydrolytic potential of the enzymes displayed the efficient saccharification capability of steam pretreated biomass. It was also found to degrade the paddy, sorghum, Acacia mangium and Ficus religiosa into simple reducing sugars by its efficient lignocellulose enzyme complex with limited consumption of sugars. Production of ethanol was also achieved with the Saccharomyces cerevisiae. Overall, it offers a great potential for the cellulosic ethanol production in an economically reliable and eco-friendly point-of-care.
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Affiliation(s)
- Velayudhan Satheeja Santhi
- Department of Molecular Microbiology, School of Biotechnology, Madurai Kamaraj University, Madurai 625 021, Tamil Nadu, India
| | - Ashutosh Gupta
- Department of Molecular Microbiology, School of Biotechnology, Madurai Kamaraj University, Madurai 625 021, Tamil Nadu, India
| | - Somasundaram Saranya
- Department of Molecular Microbiology, School of Biotechnology, Madurai Kamaraj University, Madurai 625 021, Tamil Nadu, India
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