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Gaisin VA, Burganskaya EI, Grouzdev DS, Osipova NS, Ashikhmin AA, Sinetova MA, Krutkina MS, Bryantseva IA, Sukhacheva MV, Kochetkova TV, Koziaeva VV, Kalashnikov AM, Gorlenko VM. ‘Candidatus Oscillochloris fontis’: a novel mesophilic phototrophic Chloroflexota bacterium belonging to the ubiquitous Oscillochloris genus. FEMS Microbiol Lett 2019; 366:5485639. [DOI: 10.1093/femsle/fnz097] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2019] [Accepted: 05/02/2019] [Indexed: 01/02/2023] Open
Affiliation(s)
- Vasil A Gaisin
- Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky ave. 33, bld. 2, Moscow, 119071, Russian Federation
| | - Ekaterina I Burganskaya
- Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky ave. 33, bld. 2, Moscow, 119071, Russian Federation
| | - Denis S Grouzdev
- Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky ave. 33, bld. 2, Moscow, 119071, Russian Federation
| | - Natalya S Osipova
- Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky ave. 33, bld. 2, Moscow, 119071, Russian Federation
| | - Aleksandr A Ashikhmin
- Institute of Basic Biological Problems of Russian Academy of Sciences, Federal Research Center “Pushchino Scientific Center for Biological Research of Russian Academy of Sciences”, Institutskaya ave. 2, Pushchino, 142290, Russian Federation
| | - Maria A Sinetova
- К.А. Timiryazev Institute of Plant Physiology RAS, IPP RAS, Botanicheskaya St. 35, Moscow, 127276, Russian Federation
| | - Maria S Krutkina
- Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky ave. 33, bld. 2, Moscow, 119071, Russian Federation
| | - Irina A Bryantseva
- Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky ave. 33, bld. 2, Moscow, 119071, Russian Federation
| | - Marina V Sukhacheva
- Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky ave. 33, bld. 2, Moscow, 119071, Russian Federation
| | - Tatiana V Kochetkova
- Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky ave. 33, bld. 2, Moscow, 119071, Russian Federation
| | - Veronika V Koziaeva
- Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky ave. 33, bld. 2, Moscow, 119071, Russian Federation
| | - Aleksandr M Kalashnikov
- Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky ave. 33, bld. 2, Moscow, 119071, Russian Federation
| | - Vladimir M Gorlenko
- Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky ave. 33, bld. 2, Moscow, 119071, Russian Federation
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Grouzdev DS, Rysina MS, Bryantseva IA, Gorlenko VM, Gaisin VA. Draft genome sequences of ' Candidatus Chloroploca asiatica' and ' Candidatus Viridilinea mediisalina', candidate representatives of the Chloroflexales order: phylogenetic and taxonomic implications. Stand Genomic Sci 2018; 13:24. [PMID: 30338027 PMCID: PMC6180586 DOI: 10.1186/s40793-018-0329-8] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Accepted: 09/28/2018] [Indexed: 11/10/2022] Open
Abstract
'Candidatus Chloroploca asiatica' B7-9 and 'Candidatus Viridilinea mediisalina' Kir15-3F are mesophilic filamentous anoxygenic phototrophic bacteria from alkaline aquatic environments. Both bacteria became available in the last few years and only in stable enrichment culture. In this study, we report the draft genomic sequences of 'Ca. Chloroploca asiatica' B7-9 and 'Ca. Viridilinea mediisalina' Kir15-3F, which were assembled from metagenomes of their cultures with a fold coverage 86.3× and 163.8×, respectively. The B7-9 (5.8 Mb) and the Kir15-3F (5.6 Mb) draft genome harbors 4818 and 4595 predicted protein-coding genes, respectively. In this article, we analyzed the phylogeny of representatives of the Chloroflexineae suborder in view of the appearance of new genomic data. These data were used for the revision of earlier published group-specific conserved signature indels and for searching for novel signatures for taxons in the Chloroflexineae suborder.
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Affiliation(s)
- Denis S. Grouzdev
- Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russian Federation
| | - Maria S. Rysina
- Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russian Federation
- Moscow Institute of Physics and Technology, Moscow, Russian Federation
| | - Irina A. Bryantseva
- Winogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russian Federation
| | - Vladimir M. Gorlenko
- Winogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russian Federation
| | - Vasil A. Gaisin
- Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russian Federation
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Gorlenko VM, Bryantseva IA, Kalashnikov AM, Gaisin VA, Sukhacheva MV, Gruzdev DS, Kuznetsov BB. Candidatus ‘Chloroploca asiatica’ gen. nov., sp. nov., a new mesophilic filamentous anoxygenic phototrophic bacterium. Microbiology (Reading) 2014. [DOI: 10.1134/s0026261714060083] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Ramos JL. Short and direct science: Environmental Microbiology Reports. ENVIRONMENTAL MICROBIOLOGY REPORTS 2009; 1:217-219. [PMID: 23765849 DOI: 10.1111/j.1758-2229.2009.00048.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Affiliation(s)
- Juan-Luis Ramos
- Department of Environmental Protection, Estación Experimental del Zaidín - CSIC, C/ Prof. Albareda, 1, E-18008 Granada, Spain
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