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Awaysheh A, Wilcke J, Elvinger F, Rees L, Fan W, Zimmerman KL. Evaluation of supervised machine-learning algorithms to distinguish between inflammatory bowel disease and alimentary lymphoma in cats. J Vet Diagn Invest 2016; 28:679-687. [DOI: 10.1177/1040638716657377] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Inflammatory bowel disease (IBD) and alimentary lymphoma (ALA) are common gastrointestinal diseases in cats. The very similar clinical signs and histopathologic features of these diseases make the distinction between them diagnostically challenging. We tested the use of supervised machine-learning algorithms to differentiate between the 2 diseases using data generated from noninvasive diagnostic tests. Three prediction models were developed using 3 machine-learning algorithms: naive Bayes, decision trees, and artificial neural networks. The models were trained and tested on data from complete blood count (CBC) and serum chemistry (SC) results for the following 3 groups of client-owned cats: normal, inflammatory bowel disease (IBD), or alimentary lymphoma (ALA). Naive Bayes and artificial neural networks achieved higher classification accuracy (sensitivities of 70.8% and 69.2%, respectively) than the decision tree algorithm (63%, p < 0.0001). The areas under the receiver-operating characteristic curve for classifying cases into the 3 categories was 83% by naive Bayes, 79% by decision tree, and 82% by artificial neural networks. Prediction models using machine learning provided a method for distinguishing between ALA–IBD, ALA–normal, and IBD–normal. The naive Bayes and artificial neural networks classifiers used 10 and 4 of the CBC and SC variables, respectively, to outperform the C4.5 decision tree, which used 5 CBC and SC variables in classifying cats into the 3 classes. These models can provide another noninvasive diagnostic tool to assist clinicians with differentiating between IBD and ALA, and between diseased and nondiseased cats.
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Affiliation(s)
- Abdullah Awaysheh
- Departments of Biomedical Sciences and Pathobiology (Awaysheh, Wilcke, Zimmerman), Virginia Tech, Blacksburg, VA
- Population Health Sciences (Elvinger), Virginia Tech, Blacksburg, VA
- Business Information Technology (Rees), Virginia Tech, Blacksburg, VA
- Accounting and Information Systems (Fan), Virginia Tech, Blacksburg, VA
| | - Jeffrey Wilcke
- Departments of Biomedical Sciences and Pathobiology (Awaysheh, Wilcke, Zimmerman), Virginia Tech, Blacksburg, VA
- Population Health Sciences (Elvinger), Virginia Tech, Blacksburg, VA
- Business Information Technology (Rees), Virginia Tech, Blacksburg, VA
- Accounting and Information Systems (Fan), Virginia Tech, Blacksburg, VA
| | - François Elvinger
- Departments of Biomedical Sciences and Pathobiology (Awaysheh, Wilcke, Zimmerman), Virginia Tech, Blacksburg, VA
- Population Health Sciences (Elvinger), Virginia Tech, Blacksburg, VA
- Business Information Technology (Rees), Virginia Tech, Blacksburg, VA
- Accounting and Information Systems (Fan), Virginia Tech, Blacksburg, VA
| | - Loren Rees
- Departments of Biomedical Sciences and Pathobiology (Awaysheh, Wilcke, Zimmerman), Virginia Tech, Blacksburg, VA
- Population Health Sciences (Elvinger), Virginia Tech, Blacksburg, VA
- Business Information Technology (Rees), Virginia Tech, Blacksburg, VA
- Accounting and Information Systems (Fan), Virginia Tech, Blacksburg, VA
| | - Weiguo Fan
- Departments of Biomedical Sciences and Pathobiology (Awaysheh, Wilcke, Zimmerman), Virginia Tech, Blacksburg, VA
- Population Health Sciences (Elvinger), Virginia Tech, Blacksburg, VA
- Business Information Technology (Rees), Virginia Tech, Blacksburg, VA
- Accounting and Information Systems (Fan), Virginia Tech, Blacksburg, VA
| | - Kurt L. Zimmerman
- Departments of Biomedical Sciences and Pathobiology (Awaysheh, Wilcke, Zimmerman), Virginia Tech, Blacksburg, VA
- Population Health Sciences (Elvinger), Virginia Tech, Blacksburg, VA
- Business Information Technology (Rees), Virginia Tech, Blacksburg, VA
- Accounting and Information Systems (Fan), Virginia Tech, Blacksburg, VA
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Serradell MC, Saura A, Rupil LL, Gargantini PR, Faya MI, Furlan PJ, Lujan HD. Vaccination of domestic animals with a novel oral vaccine prevents Giardia infections, alleviates signs of giardiasis and reduces transmission to humans. NPJ Vaccines 2016; 1:16018. [PMID: 29263857 PMCID: PMC5707882 DOI: 10.1038/npjvaccines.2016.18] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2016] [Revised: 07/06/2016] [Accepted: 07/28/2016] [Indexed: 11/23/2022] Open
Abstract
Giardia lamblia is a human intestinal parasite and one of the most frequent enteric pathogen of companion animals. Clinical manifestations of giardiasis, such as diarrhoea, anorexia, weight loss and lethargy, have been associated with Giardia infections in both domestic and farm animals. A few anti-parasitic drugs are routinely used to treat giardiasis, but re-infections are common and drug-resistant strains have already been reported. Unfortunately, efficient vaccines against Giardia are not available. Giardia undergoes antigenic variation; through this mechanism, parasites can avoid the host’s immune defenses, causing chronic infections and/or re-infections. Antigenic variation is characterised by a continuous switch in the expression of members of a homologous family of genes encoding surface antigens. In a previous report, we indicated that in Giardia, the mechanism responsible for the exchange of variant-specific surface proteins (VSPs) involves the RNA interference (RNAi) pathway. From a repertoire of ~200 VSP genes, only one is expressed on the surface of single trophozoites; however, RNAi machinery disruption generates trophozoites that express the complete VSP repertoire. We also demonstrated that gerbils orally immunised with VSPs isolated from these altered parasites showed high levels of protection. Here we tested this vaccine in cats and dogs, and found that it is highly efficient in preventing new infections and reducing chronic giardiasis in domestic animals both in experimental and natural infections. Remarkably, immunisation of dogs in a highly endemic area strongly decreased the percentage of infected children in the community, suggesting that this vaccine would block the zoonotic transmission of the disease.
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Affiliation(s)
- Marianela C Serradell
- Centro de Investigación y Desarrollo en Inmunología y Enfermedades Infecciosas. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Cordoba, Argentina
| | - Alicia Saura
- Centro de Investigación y Desarrollo en Inmunología y Enfermedades Infecciosas. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Cordoba, Argentina.,Facultad de Medicina, Universidad Católica de Córdoba, Cordoba, Argentina
| | - Lucia L Rupil
- Centro de Investigación y Desarrollo en Inmunología y Enfermedades Infecciosas. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Cordoba, Argentina.,Facultad de Medicina, Universidad Católica de Córdoba, Cordoba, Argentina
| | - Pablo R Gargantini
- Centro de Investigación y Desarrollo en Inmunología y Enfermedades Infecciosas. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Cordoba, Argentina.,Facultad de Medicina, Universidad Católica de Córdoba, Cordoba, Argentina
| | - Marcela I Faya
- Facultad de Veterinaria, Universidad Católica de Córdoba, Cordoba, Argentina
| | - Paulina J Furlan
- Facultad de Veterinaria, Universidad Católica de Córdoba, Cordoba, Argentina
| | - Hugo D Lujan
- Centro de Investigación y Desarrollo en Inmunología y Enfermedades Infecciosas. Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Cordoba, Argentina.,Facultad de Medicina, Universidad Católica de Córdoba, Cordoba, Argentina
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Batchelor DJ, Devauchelle P, Elliott J, Elwood CM, Freiche V, Gualtieri M, Hall EJ, Hertog ED, Neiger R, Peeters D, Roura X, Savary-Bataille K, German AJ. Mechanisms, causes, investigation and management of vomiting disorders in cats: a literature review. J Feline Med Surg 2013; 15:237-65. [PMID: 23403690 PMCID: PMC10816764 DOI: 10.1177/1098612x12473466] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Vomiting is a common presenting complaint in feline practice. This article differs from previous reviews in that it is an evidence-based review of the mechanisms, causes, investigation and management of vomiting in the domestic cat. Published evidence was reviewed, and then used to make recommendations for clinical assessment, diagnosis, antiemetic drug treatment, dietary management and monitoring of cats presenting with vomiting. The strength of the evidence on which recommendations are made (and areas where evidence is lacking for cats) has been highlighted throughout.
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Affiliation(s)
| | | | - Jonathan Elliott
- Department of Veterinary Basic Sciences, Royal Veterinary College, London, UK
| | | | | | - Massimo Gualtieri
- Department of Veterinary Clinical Science, University of Milan, Milan, Italy
| | - Edward J Hall
- School of Veterinary Sciences, University of Bristol, Langford, UK
| | | | - Reto Neiger
- Veterinärmedizinische Fakultät, Universität Giessen, Giessen, Germany
| | | | - Xavier Roura
- Hospital Clínic Veterinari, Universitat Autònoma de Barcelona, Barcelona, Spain
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Vasilopulos RJ, Mackin AJ, Rickard LG, Pharr GT, Huston CL. Prevalence and Factors Associated With Fecal Shedding of Giardia spp. in Domestic Cats. J Am Anim Hosp Assoc 2006; 42:424-9. [PMID: 17088388 DOI: 10.5326/0420424] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The prevalence of cats shedding Giardia cysts (13.6%) in the present study was found to be higher than previously reported (1% to 11%) and may reflect a higher sensitivity for the diagnostic test used. The presence of Cryptosporidium spp. oocysts, coccidial oocysts, and a clinical history of chronic (>2 weeks) gastrointestinal signs were significantly associated with the presence of Giardia spp. cysts in the feces. There were no associations between the presence of Giardia spp. cysts and type of housing, acute gastrointestinal signs, vomiting, gender, source of cat (i.e., animal shelter versus private breeder), or gastrointestinal parasites other than Cryptosporidium spp. and intestinal coccidial agents.
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Affiliation(s)
- Robert J Vasilopulos
- Department of Clinical Science, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi 39762-6100, USA
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