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Multi-trait Bayesian analysis and genetic parameter estimates in production characters of Mecheri sheep of India. Trop Anim Health Prod 2023; 55:8. [DOI: 10.1007/s11250-022-03425-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 12/06/2022] [Indexed: 12/23/2022]
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Rostamzadeh Mahdabi E, Tian R, Li Y, Wang X, Zhao M, Li H, Yang D, Zhang H, Li S, Esmailizadeh A. Genomic heritability and correlation between carcass traits in Japanese Black cattle evaluated under different ceilings of relatedness among individuals. Front Genet 2023; 14:1053291. [PMID: 36816045 PMCID: PMC9928846 DOI: 10.3389/fgene.2023.1053291] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Accepted: 01/18/2023] [Indexed: 02/04/2023] Open
Abstract
The investigation of carcass traits to produce meat with high efficiency has been in focus on Japanese Black cattle since 1972. To implement a successful breeding program in carcass production, a comprehensive understanding of genetic characteristics and relationships between the traits is of paramount importance. In this study, genomic heritability and genomic correlation between carcass traits, including carcass weight (CW), rib eye area (REA), rib thickness (RT), subcutaneous fat thickness (SFT), yield rate (YI), and beef marbling score (BMS) were estimated using the genomic data of 9,850 Japanese Black cattle (4,142 heifers and 5,708 steers). In addition, we investigated the effect of genetic relatedness degree on the estimation of genetic parameters of carcass traits in sub-populations created based on different GRM-cutoff values. Genome-based restricted maximum likelihood (GREML) analysis was applied to estimate genetic parameters. Using all animal data, the heritability values for carcass traits were estimated as moderate to relatively high magnitude, ranging from 0.338 to 0.509 with standard errors, ranging from 0.014 to 0.015. The genetic correlations were obtained low and negative between SFT and REA [-0.198 (0.034)] and between SFT and BMS [-0.096 (0.033)] traits, and high and negative between SFT and YI [-0.634 (0.022)]. REA trait was genetically highly correlated with YI and BMS [0.811 (0.012) and 0.625 (0.022), respectively]. In sub-populations created based on the genetic-relatedness ceiling, the heritability estimates ranged from 0.212 (0.131) to 0.647 (0.066). At the genetic-relatedness ceiling of 0.15, the correlation values between most traits with low genomic correlation were overestimated while the correlations between the traits with relatively moderate to high correlations, ranging from 0.380 to 0.811, were underestimated. The values were steady at the ceilings of 0.30-0.95 (sample size of 5,443-9,850) for most of the highly correlated traits. The results demonstrated that there is considerable genetic variation and also favorable genomic correlations between carcass traits. Therefore, the genetic improvement for the traits can be simultaneously attained through genomic selection. In addition, we observed that depending on the degree of relationship between individuals and sample size, the genomic heritability and correlation estimates for carcass traits may be different.
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Affiliation(s)
| | - Rugang Tian
- Institute of Animal Husbandry, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China
| | - Yuan Li
- Institute of Animal Husbandry, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China
| | - Xiao Wang
- Institute of Animal Husbandry, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China
| | - Meng Zhao
- Institute of Animal Husbandry, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China
| | - Hui Li
- Institute of Animal Husbandry, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China
| | - Ding Yang
- Institute of Animal Husbandry, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China
| | - Hao Zhang
- Institute of Animal Husbandry, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China
| | - SuFan Li
- Institute of Animal Husbandry, Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot, China
| | - Ali Esmailizadeh
- Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, Iran
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Pires BC, Tholon P, Buzanskas ME, Sbardella AP, Rosa JO, Campos da Silva LO, Torres RADA, Munari DP, Mello de Alencar M. Genetic analyses on bodyweight, reproductive, and carcass traits in composite beef cattle. ANIMAL PRODUCTION SCIENCE 2017. [DOI: 10.1071/an15458] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
In beef cattle, growth, reproductive, and carcass traits have been studied for improving productivity and quality of meat products. The aim of this study was to estimate genetic parameters for birth (BW), weaning (WW) and yearling (YW) weights, scrotal circumferences at weaning (SCW) and yearling (SCY), age at first calving (AFC), ribeye area (REA) and back fat thickness (BFT) in order to provide support for the evaluation program of the composite Canchim breed. Data on 12 967 (BW), 7481 (WW), 5131 (YW), 1447 (SCW), 1224 (SCY), 1400 (AFC), and 2082 (REA and BFT) animals were analysed using the Average Information Restricted Maximum Likelihood method under an animal model (single and multi-trait analyses). A substantial proportion of the variation in the bodyweights, scrotal circumferences and carcass traits was associated with the additive genetic term indicating that these traits may respond to the selection process. For AFC, a low heritability estimate was observed. Genetic correlations among bodyweights varied from 0.41 to 0.93. The genetic correlation among scrotal circumferences was 0.91. Important genetic correlations among YW, SCW, and SCY with AFC were observed (–0.48, –0.61, and –0.71, respectively), indicating that indirect responses to selection for these traits would be expected in the age of which the heifers calve. Furthermore, BFT presented an interesting result with calving performance due to the genetic correlation (–0.69) with AFC. Post-weaning weights showed moderate genetic correlations with REA. Many of the traits considered in the genetic evaluation of this breed are genetically correlated in a favourable manner. Genetic improvement through selection is expected for production, reproduction, and carcass traits in Canchim beef cattle.
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Junqueira V, Cardoso F, Oliveira M, Sollero B, Silva F, Lopes P. Use of molecular markers to improve relationship information in the genetic evaluation of beef cattle tick resistance under pedigree-based models. J Anim Breed Genet 2016; 134:14-26. [DOI: 10.1111/jbg.12239] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Accepted: 08/01/2016] [Indexed: 11/28/2022]
Affiliation(s)
- V.S. Junqueira
- Departamento de Zootecnia; Universidade Federal de Viçosa; Viçosa Minas Gerais (MG) Brazil
| | - F.F. Cardoso
- Empresa Brasileira de Pesquisa Agropecuária; Centro de Pesquisa de Pecuária dos Campos Sul-Brasileiros; Bagé Rio Grande do Sul (RS) Brazil
- Departamento de Zootecnia; Universidade Federal de Pelotas; Pelotas Rio Grande do Sul (RS) Brazil
| | - M.M. Oliveira
- Departamento de Zootecnia; Universidade Federal de Santa Maria; Rio Grande do Sul (RS) Brazil
| | - B.P. Sollero
- Empresa Brasileira de Pesquisa Agropecuária; Centro de Pesquisa de Pecuária dos Campos Sul-Brasileiros; Bagé Rio Grande do Sul (RS) Brazil
| | - F.F. Silva
- Departamento de Zootecnia; Universidade Federal de Viçosa; Viçosa Minas Gerais (MG) Brazil
| | - P.S. Lopes
- Departamento de Zootecnia; Universidade Federal de Viçosa; Viçosa Minas Gerais (MG) Brazil
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