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For: Baumung R, Farkas J, Boichard D, Mészáros G, Sölkner J, Curik I. GRAIN: a computer program to calculate ancestral and partial inbreeding coefficients using a gene dropping approach. J Anim Breed Genet 2015;132:100-8. [PMID: 25823836 DOI: 10.1111/jbg.12145] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2014] [Accepted: 02/04/2015] [Indexed: 12/24/2022]
Number Cited by Other Article(s)
1
Justinski C, Wilkens J, Distl O. Inbreeding Depression and Purging in Fertility and Longevity Traits in Sheep Breeds from Germany. Animals (Basel) 2024;14:3214. [PMID: 39595267 PMCID: PMC11591106 DOI: 10.3390/ani14223214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Revised: 11/02/2024] [Accepted: 11/06/2024] [Indexed: 11/28/2024]  Open
2
Haque MA, Jung JH, Choo HJ, Afrin S, Lee YM, Kim JJ. Pedigree analysis of Korean native chickens: unraveling inbreeding and genetic diversity. Poult Sci 2024;103:104071. [PMID: 39096830 PMCID: PMC11345567 DOI: 10.1016/j.psj.2024.104071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2024] [Revised: 06/24/2024] [Accepted: 07/02/2024] [Indexed: 08/05/2024]  Open
3
Posta J, Demeter C, Német Z, Sándor M, Gerencsér Z, Matics Z. Pedigree-Based Description of Danubia Alba Rabbit Breed Lines. Animals (Basel) 2024;14:2740. [PMID: 39335328 PMCID: PMC11429048 DOI: 10.3390/ani14182740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 09/18/2024] [Accepted: 09/18/2024] [Indexed: 09/30/2024]  Open
4
Wirth A, Duda J, Emmerling R, Götz KU, Birkenmaier F, Distl O. Analyzing Runs of Homozygosity Reveals Patterns of Selection in German Brown Cattle. Genes (Basel) 2024;15:1051. [PMID: 39202411 PMCID: PMC11354284 DOI: 10.3390/genes15081051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2024] [Revised: 08/06/2024] [Accepted: 08/07/2024] [Indexed: 09/03/2024]  Open
5
Nomura T. Ballou's Ancestral Inbreeding Coefficient: Formulation and New Estimate with Higher Reliability. Animals (Basel) 2024;14:1844. [PMID: 38997956 PMCID: PMC11240364 DOI: 10.3390/ani14131844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Revised: 06/13/2024] [Accepted: 06/19/2024] [Indexed: 07/14/2024]  Open
6
Nagy I, Nguyen TA. Characterizing and Eliminating the Inbreeding Load. Vet Sci 2023;11:8. [PMID: 38250914 PMCID: PMC10819885 DOI: 10.3390/vetsci11010008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Revised: 11/28/2023] [Accepted: 12/19/2023] [Indexed: 01/23/2024]  Open
7
Justinski C, Wilkens J, Distl O. Inbreeding Depression and Purging for Meat Performance Traits in German Sheep Breeds. Animals (Basel) 2023;13:3547. [PMID: 38003164 PMCID: PMC10668769 DOI: 10.3390/ani13223547] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2023] [Revised: 10/16/2023] [Accepted: 11/08/2023] [Indexed: 11/26/2023]  Open
8
Tsheten G, Fuerst-Waltl B, Pfeiffer C, Sölkner J, Bovenhuis H, Mészáros G. Inbreeding depression and its effect on sperm quality traits in Pietrain pigs. J Anim Breed Genet 2023;140:653-662. [PMID: 37409752 DOI: 10.1111/jbg.12816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Revised: 06/21/2023] [Accepted: 06/23/2023] [Indexed: 07/07/2023]
9
Wirth A, Duda J, Distl O. Impact of Inbreeding and Ancestral Inbreeding on Longevity Traits in German Brown Cows. Animals (Basel) 2023;13:2765. [PMID: 37685029 PMCID: PMC10486702 DOI: 10.3390/ani13172765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 08/26/2023] [Accepted: 08/28/2023] [Indexed: 09/10/2023]  Open
10
Genetic Diversity and Trends of Ancestral and New Inbreeding in German Sheep Breeds by Pedigree Data. Animals (Basel) 2023;13:ani13040623. [PMID: 36830410 PMCID: PMC9951766 DOI: 10.3390/ani13040623] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 01/29/2023] [Accepted: 02/07/2023] [Indexed: 02/12/2023]  Open
11
Tohidi R, Cue RI, Nazari BM, Pahlavan R. The effect of new and ancestral inbreeding on milk production traits in Iranian Holstein cattle. J Anim Breed Genet 2023;140:276-286. [PMID: 36637050 DOI: 10.1111/jbg.12755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Accepted: 12/24/2022] [Indexed: 01/14/2023]
12
Piles M, Sánchez JP, Pascual M, Rodríguez-Ramilo ST. Inbreeding depression on growth and prolificacy traits in two lines of rabbit. J Anim Breed Genet 2023;140:39-48. [PMID: 36286321 DOI: 10.1111/jbg.12745] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 10/01/2022] [Indexed: 12/13/2022]
13
Genealogical analysis of European bison population revealed a growing up population despite very low genetic diversity. PLoS One 2022;17:e0277456. [DOI: 10.1371/journal.pone.0277456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 10/28/2022] [Indexed: 11/13/2022]  Open
14
Perdomo-González DI, Laseca N, Demyda-Peyrás S, Valera M, Cervantes I, Molina A. Fine-tuning genomic and pedigree inbreeding rates in equine population with a deep and reliable stud book: the case of the Pura Raza Española horse. J Anim Sci Biotechnol 2022;13:127. [PMID: 36336696 PMCID: PMC9639299 DOI: 10.1186/s40104-022-00781-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2022] [Accepted: 09/13/2022] [Indexed: 11/09/2022]  Open
15
Nyman S, Johansson AM, Palucci V, Schönherz AA, Guldbrandtsen B, Hinrichs D, de Koning DJ. Inbreeding and pedigree analysis of the European red dairy cattle. Genet Sel Evol 2022;54:70. [PMID: 36274137 PMCID: PMC9590155 DOI: 10.1186/s12711-022-00761-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Accepted: 10/12/2022] [Indexed: 11/25/2022]  Open
16
Klein R, Oláh J, Mihók S, Posta J. Pedigree-Based Description of Three Traditional Hungarian Horse Breeds. Animals (Basel) 2022;12:ani12162071. [PMID: 36009663 PMCID: PMC9405318 DOI: 10.3390/ani12162071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 08/04/2022] [Accepted: 08/12/2022] [Indexed: 11/16/2022]  Open
17
Michels PW, Distl O. Genetic Diversity and Trends of Ancestral and New Inbreeding in Deutsch Drahthaar Assessed by Pedigree Data. Animals (Basel) 2022;12:ani12070929. [PMID: 35405917 PMCID: PMC8996862 DOI: 10.3390/ani12070929] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 03/28/2022] [Accepted: 03/30/2022] [Indexed: 11/18/2022]  Open
18
Schiavo G, Bovo S, Ribani A, Moscatelli G, Bonacini M, Prandi M, Mancin E, Mantovani R, Dall'Olio S, Fontanesi L. Comparative analysis of inbreeding parameters and runs of homozygosity islands in 2 Italian autochthonous cattle breeds mainly raised in the Parmigiano-Reggiano cheese production region. J Dairy Sci 2021;105:2408-2425. [PMID: 34955250 DOI: 10.3168/jds.2021-20915] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Accepted: 10/25/2021] [Indexed: 01/19/2023]
19
López-Cortegano E. purgeR: inbreeding and purging in pedigreed populations. Bioinformatics 2021;38:564-565. [PMID: 34406359 PMCID: PMC8723146 DOI: 10.1093/bioinformatics/btab599] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/26/2021] [Accepted: 08/16/2021] [Indexed: 02/03/2023]  Open
20
Vostry L, Vostra-Vydrova H, Citek J, Gorjanc G, Curik I. Association of inbreeding and regional equine leucocyte antigen homozygosity with the prevalence of insect bite hypersensitivity in Old Kladruber horse. Anim Genet 2021;52:422-430. [PMID: 33970495 PMCID: PMC8360196 DOI: 10.1111/age.13075] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/22/2021] [Indexed: 12/19/2022]
21
Genetic Diversity and the Impact of the Breed Proportions of US Brown Swiss in German Brown Cattle. Animals (Basel) 2021;11:ani11010152. [PMID: 33440788 PMCID: PMC7828010 DOI: 10.3390/ani11010152] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 12/28/2020] [Accepted: 01/05/2021] [Indexed: 11/17/2022]  Open
22
Sheikhlou M, Badereh S, Bahri Binabaj F. Assessment of between-founder heterogeneity in inbreeding depression for reproductive traits in Baluchi sheep. Anim Reprod Sci 2020;221:106593. [PMID: 32931988 DOI: 10.1016/j.anireprosci.2020.106593] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Revised: 08/29/2020] [Accepted: 08/31/2020] [Indexed: 10/23/2022]
23
Makanjuola BO, Maltecca C, Miglior F, Schenkel FS, Baes CF. Effect of recent and ancient inbreeding on production and fertility traits in Canadian Holsteins. BMC Genomics 2020;21:605. [PMID: 32873253 PMCID: PMC7466804 DOI: 10.1186/s12864-020-07031-w] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Accepted: 08/27/2020] [Indexed: 11/10/2022]  Open
24
Rodríguez-Ramilo ST, Reverter A, Sánchez JP, Fernández J, Velasco-Galilea M, González O, Piles M. Networks of inbreeding coefficients in a selected population of rabbits. J Anim Breed Genet 2020;137:599-608. [PMID: 32803901 DOI: 10.1111/jbg.12500] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Revised: 06/26/2020] [Accepted: 07/10/2020] [Indexed: 11/28/2022]
25
Historical Changes and Description of the Current Hungarian Hucul Horse Population. Animals (Basel) 2020;10:ani10071242. [PMID: 32708335 PMCID: PMC7401648 DOI: 10.3390/ani10071242] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Revised: 07/16/2020] [Accepted: 07/21/2020] [Indexed: 11/25/2022]  Open
26
Curik I, Kövér G, Farkas J, Szendrő Z, Romvári R, Sölkner J, Nagy I. Inbreeding depression for kit survival at birth in a rabbit population under long-term selection. Genet Sel Evol 2020;52:39. [PMID: 32640975 PMCID: PMC7346452 DOI: 10.1186/s12711-020-00557-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2019] [Accepted: 06/26/2020] [Indexed: 01/01/2023]  Open
27
Revised Calculation of Kalinowski’s Ancestral and New Inbreeding Coefficients. DIVERSITY 2020. [DOI: 10.3390/d12040155] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
28
Doekes HP, Veerkamp RF, Bijma P, de Jong G, Hiemstra SJ, Windig JJ. Inbreeding depression due to recent and ancient inbreeding in Dutch Holstein-Friesian dairy cattle. Genet Sel Evol 2019;51:54. [PMID: 31558150 PMCID: PMC6764141 DOI: 10.1186/s12711-019-0497-z] [Citation(s) in RCA: 74] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2019] [Accepted: 09/19/2019] [Indexed: 02/01/2023]  Open
29
Ács V, Bokor Á, Nagy I. Population Structure Analysis of the Border Collie Dog Breed in Hungary. Animals (Basel) 2019;9:ani9050250. [PMID: 31100978 PMCID: PMC6562970 DOI: 10.3390/ani9050250] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 05/12/2019] [Accepted: 05/13/2019] [Indexed: 11/16/2022]  Open
30
Muff S, Niskanen AK, Saatoglu D, Keller LF, Jensen H. Animal models with group-specific additive genetic variances: extending genetic group models. Genet Sel Evol 2019;51:7. [PMID: 30819110 PMCID: PMC6394059 DOI: 10.1186/s12711-019-0449-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Accepted: 02/07/2019] [Indexed: 11/10/2022]  Open
31
Genetic diversity and effect of inbreeding on litter size of the Romanov sheep. Small Rumin Res 2018. [DOI: 10.1016/j.smallrumres.2018.09.004] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
32
Todd ET, Ho SYW, Thomson PC, Ang RA, Velie BD, Hamilton NA. Founder-specific inbreeding depression affects racing performance in Thoroughbred horses. Sci Rep 2018;8:6167. [PMID: 29670190 PMCID: PMC5906619 DOI: 10.1038/s41598-018-24663-x] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Accepted: 04/05/2018] [Indexed: 11/18/2022]  Open
33
The influence of captive breeding management on founder representation and inbreeding in the ‘Alalā, the Hawaiian crow. CONSERV GENET 2015. [DOI: 10.1007/s10592-015-0788-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
34
Nicholas FW, Wade CM, Ollivier L, Sölkner J. Quantitative genetics, spread of genes and genetic improvement: papers in honour of John James. Introduction. J Anim Breed Genet 2015;132:85-8. [PMID: 25823834 DOI: 10.1111/jbg.12158] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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