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Pometti CL, Vilardi JC, Bessega CF. Signatures of natural selection in morphological quantitative traits in Argentinean populations of Senegalia gilliesii (Fabaceae). AN ACAD BRAS CIENC 2021; 93:e20201673. [PMID: 34706004 DOI: 10.1590/0001-3765202120201673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Accepted: 07/21/2021] [Indexed: 11/21/2022] Open
Abstract
In order to elucidate the role of evolutionary forces in shaping the variation of quantitative traits in Senegalia gilliesii we evaluate seven phenotypic traits in three Argentinean populations, two of them sharing environmental and vegetation type conditions, and a third one ecologically differentiated from the former. The phenotypic traits were compared with molecular markers. Here, we search for signatures of selection by means of the comparison PST-FST . We assessed if the averages of the seven phenotypic traits were different among populations by means of ANOVA and we performed discriminant analysis of principal components (DAPC) for both morphological and molecular data. The ANOVA showed significant results only for two traits. For all foliar traits and two spine traits, the PST-FST comparison suggested the occurrence of stabilizing selection. The DAPC obtained from AFLP data showed three well defined groups of populations; when the same analysis was conducted with morphological data the scatterplot showed high overlapping among individuals and could not separate the populations. Overall, our findings suggest a prominent role of stabilizing selection in all foliar traits and stipular spine length. These results could be extrapolated to other tropical and subtropical acacias. Further studies are needed to analyse the mechanisms underlying genetic differentiation in natural populations of S. gilliesii, find its relationship with eco-geographical variables.
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Affiliation(s)
- Carolina L Pometti
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento Ecología, Genética y Evolución (EGE), Intendente Güiraldes 2160, 1428, Buenos Aires, Argentina.,CONICET-Universidad de Buenos Aires. Instituto de Ecología, Genética y Evolución (IEGEBA), Intendente Güiraldes 2160, 1428, Buenos Aires, Argentina
| | - Juan C Vilardi
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento Ecología, Genética y Evolución (EGE), Intendente Güiraldes 2160, 1428, Buenos Aires, Argentina.,CONICET-Universidad de Buenos Aires. Instituto de Ecología, Genética y Evolución (IEGEBA), Intendente Güiraldes 2160, 1428, Buenos Aires, Argentina
| | - Cecilia F Bessega
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento Ecología, Genética y Evolución (EGE), Intendente Güiraldes 2160, 1428, Buenos Aires, Argentina.,CONICET-Universidad de Buenos Aires. Instituto de Ecología, Genética y Evolución (IEGEBA), Intendente Güiraldes 2160, 1428, Buenos Aires, Argentina
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Chavarria‐Pizarro T, Gomez JP, Ungvari‐Martin J, Bay R, Miyamoto MM, Kimball R. Strong phenotypic divergence in spite of low genetic structure in the endemic Mangrove Warbler subspecies ( Setophaga petechia xanthotera) of Costa Rica. Ecol Evol 2019; 9:13902-13918. [PMID: 31938490 PMCID: PMC6953683 DOI: 10.1002/ece3.5826] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Accepted: 10/18/2019] [Indexed: 12/13/2022] Open
Abstract
Despite the enormous advances in genetics, links between phenotypes and genotypes have been made for only a few nonmodel organisms. However, such links can be essential to understand mechanisms of ecological speciation. The Costa Rican endemic Mangrove Warbler subspecies provides an excellent subject to study differentiation with gene flow, as it is distributed along a strong precipitation gradient on the Pacific coast with no strong geographic barriers to isolate populations. Mangrove Warbler populations could be subject to divergent selection driven by precipitation, which influences soil salinity levels, which in turn influences forest structure and food resources. We used single nucleotide polymorphisms (SNPs) and morphological traits to examine the balance between neutral genetic and phenotypic divergence to determine whether selection has acted on traits and genes with functions related to specific environmental variables. We present evidence showing: (a) associations between environmental variables and SNPs, identifying candidate genes related to bill morphology (BMP) and osmoregulation, (b) absence of population genetic structure in neutrally evolving markers, (c) divergence in bill size across the precipitation gradient, and (d) strong phenotypic differentiation (P ST) which largely exceeds neutral genetic differentiation (F ST) in bill size. Our results indicate an important role for salinity, forest structure, and resource availability in maintaining phenotypic divergence of Mangrove Warblers through natural selection. Our findings add to the growing body of literature identifying the processes involved in phenotypic differentiation along environmental gradients in the face of gene flow.
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Affiliation(s)
- Tania Chavarria‐Pizarro
- Department of BiologyUniversity of FloridaGainesvilleFLUSA
- Department of BiologyLudwig Maximilian University of MunichMunichGermany
| | - Juan Pablo Gomez
- Department of BiologyUniversity of FloridaGainesvilleFLUSA
- Departamento de Química y BiologíaUniversidad del NorteBarranquillaColombia
| | | | - Rachael Bay
- Department of Evolution and EcologyUniversity of CaliforniaDavisCAUSA
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3
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Schlesselmann AV, Dussex N, Cooper J, Monks JM, O'Donnell CFJ, Robertson BC. Contrasting patterns of population structure at large and fine geographical scales in a migratory avian disturbance specialist of braided river ecosystems. DIVERS DISTRIB 2019. [DOI: 10.1111/ddi.12994] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Affiliation(s)
- Ann‐Kathrin V. Schlesselmann
- Manaaki Whenua Landcare Research Dunedin New Zealand
- Department of Zoology University of Otago Dunedin New Zealand
| | - Nicolas Dussex
- Department of Bioinformatics and Genetics Swedish Museum of Natural History Stockholm Sweden
| | - Jamie Cooper
- Department of Zoology University of Otago Dunedin New Zealand
| | - Joanne M. Monks
- Department of Conservation Biodiversity Group Dunedin New Zealand
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Dávalos LM, Lancaster WC, Núñez-Novas MS, León YM, Lei B, Flanders J, Russell AL. A coalescent-based estimator of genetic drift, and acoustic divergence in the Pteronotus parnellii species complex. Heredity (Edinb) 2019; 122:417-427. [PMID: 30120366 PMCID: PMC6460761 DOI: 10.1038/s41437-018-0129-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Revised: 07/04/2018] [Accepted: 07/06/2018] [Indexed: 01/12/2023] Open
Abstract
Determining the processes responsible for phenotypic variation is one of the central tasks of evolutionary biology. While the importance of acoustic traits for foraging and communication in echolocating mammals suggests adaptation, the seldom-tested null hypothesis to explain trait divergence is genetic drift. Here we derive FST values from multi-locus coalescent isolation-with-migration models, and couple them with estimates of quantitative trait divergence, or PST, to test drift as the evolutionary process responsible for phenotypic divergence in island populations of the Pteronotus parnellii species complex. Compared to traditional comparisons of PST to FST, the migration-based estimates of FST are unidirectional instead of bidirectional, simultaneously integrate variation among loci and individuals, and posterior densities of PST and FST can be compared directly. We found the evolution of higher call frequencies is inconsistent with genetic drift for the Hispaniolan population, despite many generations of isolation from its Puerto Rican counterpart. While the Hispaniolan population displays dimorphism in call frequencies, the higher frequency of the females is incompatible with sexual selection. Instead, cultural drift toward higher frequencies among Hispaniolan females might explain the divergence. By integrating Bayesian coalescent and trait analyses, this study demonstrates a powerful approach to testing genetic drift as the default evolutionary mechanism of trait differentiation between populations.
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Affiliation(s)
- Liliana M Dávalos
- Department of Ecology and Evolution and Consortium for Inter-Disciplinary Environmental Research, Stony Brook University, Stony Brook, NY, 11794, USA.
| | - Winston C Lancaster
- Department of Biological Sciences, California State University, Sacramento, CA, 95819, USA
- Department of Biology, University of Alabama, Birmingham, AL, 35294, USA
| | - Miguel S Núñez-Novas
- Museo Nacional de Historia Natural Profesor Eugenio De Jesús Marcano. César Nicolás Penson Street esq. Máximo Gómez, Plaza de la Cultura, Santo Domingo, Dominican Republic
| | - Yolanda M León
- Instituto Tecnológico de Santo Domingo y Grupo Jaragua, Santo Domingo, Dominican Republic
| | - Bonnie Lei
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, 02138, USA
- Microsoft, One Microsoft Way, Redmond, WA, 98052, USA
| | - Jon Flanders
- School of Biological Sciences, Life Sciences Building, University of Bristol, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK
- Bat Conservation International, 500 North Capital of Texas Highway, Austin, TX, 78746, USA
| | - Amy L Russell
- Department of Biology, Grand Valley State University, Allendale, MI, 49401, USA.
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Phenotypic and genetic divergence among island populations of sika deer (Cervus nippon) in southern Japan: a test of the local adaptation hypothesis. POPUL ECOL 2018. [DOI: 10.1007/s10144-018-0607-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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6
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Phenotypic divergence despite low genetic differentiation in house sparrow populations. Sci Rep 2018; 8:394. [PMID: 29321524 PMCID: PMC5762629 DOI: 10.1038/s41598-017-18718-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2017] [Accepted: 12/17/2017] [Indexed: 11/09/2022] Open
Abstract
Studying patterns of phenotypic variation among populations can shed light on the drivers of evolutionary processes. The house sparrow (Passer domesticus) is one of the world's most ubiquitous bird species, as well as a successful invader. We investigated phenotypic variation in house sparrow populations across a climatic gradient and in relation to a possible scenario of an invasion. We measured variation in morphological, coloration, and behavioral traits (exploratory behavior and neophobia) and compared it to the neutral genetic variation. We found that sparrows were larger and darker in northern latitudes, in accordance with Bergmann's and Gloger's biogeographic rules. Morphology and behavior mostly differed between the southernmost populations and the other regions, supporting the possibility of an invasion. Genetic differentiation was low and diversity levels were similar across populations, indicating high gene flow. Nevertheless, the southernmost and northern populations differed genetically to some extent. Furthermore, genetic differentiation (F ST) was lower in comparison to phenotypic variation (P ST), indicating that the phenotypic variation is shaped by directional selection or by phenotypic plasticity. This study expands our knowledge on evolutionary mechanisms and biological invasions.
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Seeholzer GF, Brumfield RT. Isolation by distance, not incipient ecological speciation, explains genetic differentiation in an Andean songbird (Aves: Furnariidae:
Cranioleuca antisiensis,
Line‐cheeked Spinetail) despite near threefold body size change across an environmental gradient. Mol Ecol 2017; 27:279-296. [DOI: 10.1111/mec.14429] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Revised: 10/18/2017] [Accepted: 11/02/2017] [Indexed: 12/14/2022]
Affiliation(s)
- Glenn F. Seeholzer
- Museum of Natural Science and Department of Biological Sciences Louisiana State University Baton Rouge LA USA
| | - Robb T. Brumfield
- Museum of Natural Science and Department of Biological Sciences Louisiana State University Baton Rouge LA USA
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Bertrand JAM, Delahaie B, Bourgeois YXC, Duval T, García-Jiménez R, Cornuault J, Pujol B, Thébaud C, Milá B. The role of selection and historical factors in driving population differentiation along an elevational gradient in an island bird. J Evol Biol 2016; 29:824-36. [DOI: 10.1111/jeb.12829] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2015] [Accepted: 01/10/2016] [Indexed: 01/31/2023]
Affiliation(s)
- J. A. M. Bertrand
- Laboratoire Évolution et Diversité Biologique; UMR 5174; Université Paul Sabatier; Toulouse 3 - Centre National de la Recherche Scientifique (CNRS) - École Nationale de Formation Agronomique (ENFA); Toulouse Cedex 9 France
| | - B. Delahaie
- Laboratoire Évolution et Diversité Biologique; UMR 5174; Université Paul Sabatier; Toulouse 3 - Centre National de la Recherche Scientifique (CNRS) - École Nationale de Formation Agronomique (ENFA); Toulouse Cedex 9 France
| | - Y. X. C. Bourgeois
- Laboratoire Évolution et Diversité Biologique; UMR 5174; Université Paul Sabatier; Toulouse 3 - Centre National de la Recherche Scientifique (CNRS) - École Nationale de Formation Agronomique (ENFA); Toulouse Cedex 9 France
| | - T. Duval
- Hémisphères; Poindimié New Caledonia
| | - R. García-Jiménez
- National Museum of Natural Sciences; Spanish National Research Council (CSIC); Madrid Spain
| | - J. Cornuault
- Laboratoire Évolution et Diversité Biologique; UMR 5174; Université Paul Sabatier; Toulouse 3 - Centre National de la Recherche Scientifique (CNRS) - École Nationale de Formation Agronomique (ENFA); Toulouse Cedex 9 France
| | - B. Pujol
- Laboratoire Évolution et Diversité Biologique; UMR 5174; Université Paul Sabatier; Toulouse 3 - Centre National de la Recherche Scientifique (CNRS) - École Nationale de Formation Agronomique (ENFA); Toulouse Cedex 9 France
| | - C. Thébaud
- Laboratoire Évolution et Diversité Biologique; UMR 5174; Université Paul Sabatier; Toulouse 3 - Centre National de la Recherche Scientifique (CNRS) - École Nationale de Formation Agronomique (ENFA); Toulouse Cedex 9 France
| | - B. Milá
- National Museum of Natural Sciences; Spanish National Research Council (CSIC); Madrid Spain
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Dussex N, Sainsbury J, Moorhouse R, Jamieson IG, Robertson BC. Evidence for Bergmann’s Rule and Not Allopatric Subspeciation in the Threatened Kaka ( Nestor meridionalis ). J Hered 2015; 106:679-91. [DOI: 10.1093/jhered/esv079] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Accepted: 09/10/2015] [Indexed: 11/13/2022] Open
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10
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Ozerov MY, Himberg M, Aykanat T, Sendek DS, Hägerstrand H, Verliin A, Krause T, Olsson J, Primmer CR, Vasemägi A. Generation of a neutral F
ST
baseline for testing local adaptation on gill raker number within and between European whitefish ecotypes in the Baltic Sea basin. J Evol Biol 2015; 28:1170-83. [DOI: 10.1111/jeb.12645] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2014] [Revised: 04/09/2015] [Accepted: 04/10/2015] [Indexed: 01/17/2023]
Affiliation(s)
- M. Y. Ozerov
- Department of Biology; University of Turku; Turku Finland
| | - M. Himberg
- Faculty of Science and Engineering; Åbo Akademi University; Turku Finland
| | - T. Aykanat
- Department of Biology; University of Turku; Turku Finland
| | - D. S. Sendek
- State Research Institute on Lake and River Fisheries (GosNIORKh); St. Petersburg Russia
| | - H. Hägerstrand
- Faculty of Science and Engineering; Åbo Akademi University; Turku Finland
| | - A. Verliin
- Estonian Marine Institute; University of Tartu; Tartu Estonia
| | - T. Krause
- Institute of Agricultural and Environmental Sciences; Estonian University of Life Sciences; Tartu Estonia
| | - J. Olsson
- Department of Aquatic Resources; Institute for Coastal Research; Swedish University of Agricultural Sciences; Öregrund Sweden
| | - C. R. Primmer
- Department of Biology; University of Turku; Turku Finland
| | - A. Vasemägi
- Department of Biology; University of Turku; Turku Finland
- Institute of Agricultural and Environmental Sciences; Estonian University of Life Sciences; Tartu Estonia
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Laaksonen T, Sirkiä PM, Calhim S, Brommer JE, Leskinen PK, Primmer CR, Adamík P, Artemyev AV, Belskii E, Both C, Bureš S, Burgess MD, Doligez B, Forsman JT, Grinkov V, Hoffmann U, Ivankina E, Král M, Krams I, Lampe HM, Moreno J, Mägi M, Nord A, Potti J, Ravussin PA, Sokolov L. Sympatric divergence and clinal variation in multiple coloration traits of Ficedula flycatchers. J Evol Biol 2015; 28:779-90. [PMID: 25683091 DOI: 10.1111/jeb.12604] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Revised: 01/23/2015] [Accepted: 02/06/2015] [Indexed: 01/25/2023]
Abstract
Geographic variation in phenotypes plays a key role in fundamental evolutionary processes such as local adaptation, population differentiation and speciation, but the selective forces behind it are rarely known. We found support for the hypothesis that geographic variation in plumage traits of the pied flycatcher Ficedula hypoleuca is explained by character displacement with the collared flycatcher Ficedula albicollis in the contact zone. The plumage traits of the pied flycatcher differed strongly from the more conspicuous collared flycatcher in a sympatric area but increased in conspicuousness with increasing distance to there. Phenotypic differentiation (PST ) was higher than that in neutral genetic markers (FST ), and the effect of geographic distance remained when statistically controlling for neutral genetic differentiation. This suggests that a cline created by character displacement and gene flow explains phenotypic variation across the distribution of this species. The different plumage traits of the pied flycatcher are strongly to moderately correlated, indicating that they evolve non-independently from each other. The flycatchers provide an example of plumage patterns diverging in two species that differ in several aspects of appearance. The divergence in sympatry and convergence in allopatry in these birds provide a possibility to study the evolutionary mechanisms behind the highly divergent avian plumage patterns.
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Affiliation(s)
- T Laaksonen
- Department of Biology, University of Turku, Turku, Finland; Finnish Museum of Natural History, Zoology Unit, University of Helsinki, Helsinki, Finland
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12
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Bitton PP, Graham BA. Change in wing morphology of the European starling during and after colonization of North America. J Zool (1987) 2014. [DOI: 10.1111/jzo.12200] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- P-P. Bitton
- Department of Biological Sciences; University of Windsor; Windsor ON Canada
| | - B. A. Graham
- Department of Biological Sciences; University of Windsor; Windsor ON Canada
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