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Lim HC, Habib A, Chen WJ. Comparative Phylogeography and Phylogeny of Pennah Croakers (Teleostei: Sciaenidae) in Southeast Asian Waters. Genes (Basel) 2021; 12:genes12121926. [PMID: 34946874 PMCID: PMC8701226 DOI: 10.3390/genes12121926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2021] [Revised: 11/28/2021] [Accepted: 11/28/2021] [Indexed: 11/16/2022] Open
Abstract
A broad-scale comparative phylogeographic and phylogenetic study of pennah croakers, mainly Pennahia anea, P. macrocephalus, and P. ovata was conducted to elucidate the mechanisms that may have driven the diversification of marine organisms in Southeast Asian waters. A total of 316 individuals from the three species, and an additional eight and six individuals of P. argentata and P. pawak were employed in this study. Two genetically divergent lineages each of P. argentata and P. anea (lineages L1 and L2) were respectively detected from the analyses based on mitochondrial cytochrome b gene data. Historical biogeography analysis with a multi-gene dataset revealed that Pennahia species most likely originated in the South China Sea and expanded into the eastern Indian Ocean, East China Sea, and northwestern Pacific Ocean through three separate range expansions. The main diversifications of Pennahia species occurred during Miocene and Pliocene periods, and the occurrences of lineage divergences within P. anea and P. argentata were during the Pleistocene, likely as a consequence of cyclical glaciations. The population expansions that occurred after the sea level rise might be the reason for the population homogeneity observed in P. macrocephalus and most P. anea L2 South China Sea populations. The structure observed between the two populations of P. ovata, and the restricted distributions of P. anea lineage L1 and P. ovata in the eastern Indian Ocean, might have been hampered by the northward flowing ocean current at the Malacca Strait and by the distribution of coral reefs or rocky bottoms. While our results support S. Ekman’s center-of-origin hypothesis taking place in the South China Sea, the Malacca Strait serving as the center of overlap is a supplementary postulation for explaining the present-day high diversity of pennah croakers centered in these waters.
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Affiliation(s)
- Hong-Chiun Lim
- Institute of Oceanography, National Taiwan University, Taipei 10617, Taiwan;
- Department of Biotechnology, Faculty of Applied Sciences, AIMST University, Sungai Petan 08100, Kedah, Malaysia
| | - Ahasan Habib
- Faculty of Fisheries and Food Science, Universiti Malaysia Terengganu, Kuala Nerus 21030, Terengganu, Malaysia;
- Department of Fisheries and Marine Science, Noakhali Science and Technology University, Sonapur 3814, Bangladesh
| | - Wei-Jen Chen
- Institute of Oceanography, National Taiwan University, Taipei 10617, Taiwan;
- Correspondence:
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Tornabene L, Greenfield DW, Erdmann MV. A review of the Eviotazebrina complex, with descriptions of four new species (Teleostei, Gobiidae). Zookeys 2021; 1057:149-184. [PMID: 34552371 PMCID: PMC8417026 DOI: 10.3897/zookeys.1057.66675] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 07/20/2021] [Indexed: 11/12/2022] Open
Abstract
The Eviotazebrina complex includes eight species of closely-related dwarfgobies, four of which are herein described as new. The complex is named for Eviotazebrina Lachner & Karnella, 1978, an Indian Ocean species with the holotype from the Seychelles Islands and also known from the Maldives, which was once thought to range into the Gulf of Aqaba and the Red Sea eastward to the Great Barrier Reef of Australia. Our analysis supports the recognition of four genetically distinct, geographically non-overlapping, species within what was previously called E.zebrina, with E.zebrina being restricted to the Indian Ocean, E.marerubrum sp. nov. described from the Red Sea, E.longirostris sp. nov. described from western New Guinea, and E.pseudozebrina sp. nov. described from Fiji. The caudal fin of all four of these species is crossed by oblique black bars in preservative, but these black bars are absent from the four other species included in the complex. Two of the other species within the complex, E.tetha and E.gunawanae are morphologically similar to each other in having the AITO cephalic-sensory pore positioned far forward and opening anteriorly. Eviotatetha is known from lagoonal environments in Cenderawasih Bay and Raja Ampat, West Papua, and E.gunawanae is known only from deeper reefs (35-60 m) from Fakfak Regency, West Papua. The final two species are E.cometa which is known from Fiji and Tonga and possesses red bars crossing the caudal fin (but lost in preservative) and a 9/8 dorsal/anal-fin formula, and E.oculineata sp. nov., which is described as new from New Guinea and the Solomon Islands, and possesses an 8/7 dorsal/anal-fin formula and lacks red caudal bars. Eviotaoculineata has been confused with E.cometa in the past.
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Affiliation(s)
- Luke Tornabene
- School of Aquatic and Fishery Sciences, and the Burke Museum of Natural History and Culture, University of Washington, 1122 NE Boat Street, Seattle, Washington, 98105, USA
| | - David W Greenfield
- Research Associate, Department of Ichthyology, California Academy of Sciences, 55 Music Concourse Dr., Golden Gate Park, San Francisco, California 94118-4503, USA.,Professor Emeritus, University of Hawaii. Mailing address: 944 Egan Ave., Pacific Grove, CA 93950, USA
| | - Mark V Erdmann
- Conservation International Aotearoa, University of Auckland, 23 Symonds Street, Auckland 1010, New Zealand.,Research Associate, Department of Ichthyology, California Academy of Sciences, 55 Music Concourse Dr., Golden Gate Park, San Francisco, CA 94118-4599, USA
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Heery EC, Hoeksema BW, Browne NK, Reimer JD, Ang PO, Huang D, Friess DA, Chou LM, Loke LHL, Saksena-Taylor P, Alsagoff N, Yeemin T, Sutthacheep M, Vo ST, Bos AR, Gumanao GS, Syed Hussein MA, Waheed Z, Lane DJW, Johan O, Kunzmann A, Jompa J, Taira D, Bauman AG, Todd PA. Urban coral reefs: Degradation and resilience of hard coral assemblages in coastal cities of East and Southeast Asia. MARINE POLLUTION BULLETIN 2018; 135:654-681. [PMID: 30301085 DOI: 10.1016/j.marpolbul.2018.07.041] [Citation(s) in RCA: 77] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2018] [Revised: 07/10/2018] [Accepted: 07/16/2018] [Indexed: 05/28/2023]
Abstract
Given predicted increases in urbanization in tropical and subtropical regions, understanding the processes shaping urban coral reefs may be essential for anticipating future conservation challenges. We used a case study approach to identify unifying patterns of urban coral reefs and clarify the effects of urbanization on hard coral assemblages. Data were compiled from 11 cities throughout East and Southeast Asia, with particular focus on Singapore, Jakarta, Hong Kong, and Naha (Okinawa). Our review highlights several key characteristics of urban coral reefs, including "reef compression" (a decline in bathymetric range with increasing turbidity and decreasing water clarity over time and relative to shore), dominance by domed coral growth forms and low reef complexity, variable city-specific inshore-offshore gradients, early declines in coral cover with recent fluctuating periods of acute impacts and rapid recovery, and colonization of urban infrastructure by hard corals. We present hypotheses for urban reef community dynamics and discuss potential of ecological engineering for corals in urban areas.
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Affiliation(s)
- Eliza C Heery
- Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore
| | - Bert W Hoeksema
- Taxonomy and Systematics Group, Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, the Netherlands; Institute of Biology Leiden, Leiden University, P.O. Box 9505, 2300 RA Leiden, the Netherlands.
| | - Nicola K Browne
- Molecular and Life Sciences, Faculty of Science and Engineering, Bentley Campus, Curtin University, Perth, WA 6102, Australia; Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore
| | - James D Reimer
- Molecular Invertebrate Systematics and Ecology Laboratory, Department of Biology, Chemistry and Marine Sciences, Faculty of Science, University of the Ryukyus, Nishihara, Okinawa, Japan; Tropical Biosphere Research Center, University of the Ryukyus, Nishihara, Okinawa, Japan
| | - Put O Ang
- Marine Science Laboratory, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong, China
| | - Danwei Huang
- Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore; Tropical Marine Science Institute, National University of Singapore, Singapore 119227, Singapore
| | - Daniel A Friess
- Department of Geography, National University of Singapore, Singapore 117570, Singapore; Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore
| | - Loke Ming Chou
- Tropical Marine Science Institute, National University of Singapore, Singapore 119227, Singapore
| | - Lynette H L Loke
- Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore
| | - Poonam Saksena-Taylor
- Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore
| | - Nadia Alsagoff
- Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore
| | - Thamasak Yeemin
- Marine Biodiversity Research Group, Department of Biology, Faculty of Science, Ramkhamhaeng University, Huamark, Bangkok 10240, Thailand
| | - Makamas Sutthacheep
- Marine Biodiversity Research Group, Department of Biology, Faculty of Science, Ramkhamhaeng University, Huamark, Bangkok 10240, Thailand
| | - Si Tuan Vo
- Institute of Oceanography, Vietnam Academy of Science and Technology, 1 Cau Da, Nha Trang, Khanh Hoa, Viet Nam
| | - Arthur R Bos
- Department of Biology, The American University in Cairo, P.O. Box 74, New Cairo 11835, Egypt; Taxonomy and Systematics Group, Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, the Netherlands
| | - Girley S Gumanao
- Marine Biology Department, Davao del Norte State College, New Visayas, 8105 Panabo City, the Philippines
| | - Muhammad Ali Syed Hussein
- Endangered Marine Species Research Unit, Borneo Marine Research Institute, Universiti Malaysia Sabah, 88400 Kota Kinabalu, Sabah, Malaysia
| | - Zarinah Waheed
- Endangered Marine Species Research Unit, Borneo Marine Research Institute, Universiti Malaysia Sabah, 88400 Kota Kinabalu, Sabah, Malaysia
| | - David J W Lane
- Lee Kong Chian Natural History Museum, Faculty of Science, National University of Singapore, 2 Conservatory Drive, Singapore 117377, Singapore
| | - Ofri Johan
- Research Institute for Ornamental Fish Culture, Jl. Perikanan No. 13, Pancoran Mas, Kota Depok, Jawa Barat 16436, Indonesia
| | - Andreas Kunzmann
- Leibniz Center for Tropical Marine Research (ZMT), Fahrenheitstr. 6, 28359 Bremen, Germany
| | - Jamaluddin Jompa
- Department of Marine Science, Hasanuddin University, Makassar, Indonesia
| | - Daisuke Taira
- Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore
| | - Andrew G Bauman
- Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore
| | - Peter A Todd
- Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore.
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Tornabene L, Deis B, Erdmann MV. Evaluating the phylogenetic position of the goby genus Kelloggella (Teleostei: Gobiidae), with notes on osteology of the genus and description of a new species from Niue in the South Central Pacific Ocean. Zool J Linn Soc 2017. [DOI: 10.1093/zoolinnean/zlx060] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Luke Tornabene
- School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA, USA
- Burke Museum of Natural History and Culture, University of Washington, Seattle, WA, USA
| | - Brian Deis
- Department of Biology, University of Hawaii at Manoa, Honolulu, HI, USA
| | - Mark V Erdmann
- Conservation International Indonesia Marine Program, Renon, Denpasar, Bali, Indonesia
- California Academy of Sciences, San Francisco, CA, USA
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