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Liu Q, Yuan H, Xu J, Cui D, Xiong G, Schwarzacher T, Heslop-Harrison JS. The mitochondrial genome of the diploid oat Avena longiglumis. BMC PLANT BIOLOGY 2023; 23:218. [PMID: 37098475 PMCID: PMC10131481 DOI: 10.1186/s12870-023-04217-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 04/06/2023] [Indexed: 06/19/2023]
Abstract
BACKGROUND Avena longiglumis Durieu (2n = 2x = 14) is a wild relative of cultivated oat (Avena sativa, 2n = 6x = 42) with good agronomic and nutritional traits. The plant mitochondrial genome has a complex organization and carries genetic traits of value in exploiting genetic resources, not least male sterility alleles used to generate F1 hybrid seeds. Therefore, we aim to complement the chromosomal-level nuclear and chloroplast genome assemblies of A. longiglumis with the complete assembly of the mitochondrial genome (mitogenome) based on Illumina and ONT long reads, comparing its structure with Poaceae species. RESULTS The complete mitochondrial genome of A. longiglumis can be represented by one master circular genome being 548,445 bp long with a GC content of 44.05%. It can be represented by linear or circular DNA molecules (isoforms or contigs), with multiple alternative configurations mediated by long (4,100-31,235 bp) and medium (144-792 bp) size repeats. Thirty-five unique protein-coding genes, three unique rRNA genes, and 11 unique tRNA genes are identified. The mitogenome is rich in duplications (up to 233 kb long) and multiple tandem or simple sequence repeats, together accounting for more than 42.5% of the total length. We identify homologous sequences between the mitochondrial, plastid and nuclear genomes, including the exchange of eight plastid-derived tRNA genes, and nuclear-derived retroelement fragments. At least 85% of the mitogenome is duplicated in the A. longiglumis nuclear genome. We identify 269 RNA editing sites in mitochondrial protein-coding genes including stop codons truncating ccmFC transcripts. CONCLUSIONS Comparative analysis with Poaceae species reveals the dynamic and ongoing evolutionary changes in mitochondrial genome structure and gene content. The complete mitochondrial genome of A. longiglumis completes the last link of the oat reference genome and lays the foundation for oat breeding and exploiting the biodiversity in the genus.
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Affiliation(s)
- Qing Liu
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization / Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
- South China National Botanical Garden, Guangzhou, 510650, China.
- Center for Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China.
| | - Hongyu Yuan
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization / Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- South China National Botanical Garden, Guangzhou, 510650, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jiaxin Xu
- College of Plant Protection, South China Agricultural University, Guangzhou, 510642, China
| | - Dongli Cui
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization / Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- South China National Botanical Garden, Guangzhou, 510650, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Gui Xiong
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization / Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- South China National Botanical Garden, Guangzhou, 510650, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Trude Schwarzacher
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization / Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- South China National Botanical Garden, Guangzhou, 510650, China
- Department of Genetics and Genome Biology, Institute for Environmental Futures, University of Leicester, Leicester, LE1 7RH, UK
| | - John Seymour Heslop-Harrison
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization / Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
- South China National Botanical Garden, Guangzhou, 510650, China.
- Department of Genetics and Genome Biology, Institute for Environmental Futures, University of Leicester, Leicester, LE1 7RH, UK.
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Feed Intake Parameters of Horses Fed Soaked or Steamed Hay and Hygienic Quality of Hay Stored following Treatment. Animals (Basel) 2021; 11:ani11092729. [PMID: 34573695 PMCID: PMC8471832 DOI: 10.3390/ani11092729] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 09/09/2021] [Accepted: 09/16/2021] [Indexed: 12/04/2022] Open
Abstract
Simple Summary Dusty hay is particularly harmful to horses with equine asthma, where the dust mainly consists of microbial deposits in addition to abiotic ones. Soaking and steaming hay can improve its hygienic quality by rinsing off dust, but also reducing the viability of microorganisms. In this study, we investigated whether the treated hay remains stable during subsequent storage, and how the horses’ feed intake as well as chewing activity change with treated hay. Microbial counts were determined by culture methods in meadow hay before and after soaking or steaming, and subsequent storage at 10 and 25 °C for 6, 12 and 24 h. Chewing activity was monitored while horses consumed native or treated hay. Steaming effectively reduced yeasts and typical mold. Steamed hay was almost stable during storage, but storing soaked hay increased yeasts, and typical bacteria and mold. The intake of soaked hay was characterized by a particularly low consumption rate and high chewing intensity, but these per se positive effects seemed to be biased by a lower acceptance. However, steaming can be used to reduce counts of viable microorganisms. The feeding of soaked hay is recommended directly after treatment, to avoid hygienic problems. Abstract Horses suffering from equine asthma must consume low-dust forage, with soaking and steaming being suitable methods of hay treatment. The impacts of this treated hay’s subsequent storage and effects on the horses’ chewing activity are largely unknown. Meadow hay was soaked (10–15 °C, 15 min) or steamed (100 °C, 60 min). Microbial counts (colony forming units (CFU)) were determined by culture before and after soaking or steaming, and subsequent storage at 10 and 25 °C for 6, 12 and 24 h (three replicates each). Six horses were fed native, soaked and steamed hay, according to a cross-over design, and chewing parameters were measured. Steaming reduced (p < 0.05) typical mold vs. soaking (0 vs. 50 CFU/g) and yeasts vs. native and steamed hay (0 vs. 102 and 90 CFU/g). Storing soaked hay elevated bacteria, mold, and yeasts (p < 0.05). Within the first 60 min of hay intake, the steamed hay and soaked hay were eaten slower (19.5 and 21.5 g dry matter/min, respectively; p < 0.05) and the steamed hay was chewed more intensely (steamed hay: 3537; native: 2622; and soaked: 2521 chewing cycles/kg dry matter, p < 0.05). Steaming particularly improves the hygienic quality of hay. Soaked hay is not stable when stored and is less accepted by horses.
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Campbell TE, Doughty H, Harris PA, de Laat MA, Sillence MN. Factors Affecting the Rate and Measurement of Feed Intake for a Cereal-Based Meal in Horses. J Equine Vet Sci 2019; 84:102869. [PMID: 31864455 DOI: 10.1016/j.jevs.2019.102869] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Revised: 11/04/2019] [Accepted: 11/16/2019] [Indexed: 10/25/2022]
Abstract
The rapid intake of high-cereal, low-roughage meals may cause gastrointestinal and behavioral disorders. We investigated some of the factors that can affect the rate of intake (ROI) in four separate studies. Study 1 investigated the effect of chaff length and addition rate on the ROI of oats. The ROI decreased as more chaff was added to the diet, attaining significance (P < .05, n = 6) at levels above 15% addition and reaching a plateau at ∼50%. This was independent of stalk length (1.4 cm vs. 4.1 cm). Study 2 showed that meal size (varying from 0.5 to 4 g/kg BW) did not affect the ROI for a cereal-based meal, nor was ROI altered by the addition of 10% molasses (n = 6). Study 3 demonstrated that ROI changed markedly over the course of a meal, commencing at an average rate of 74 g/minute for the first 5 minutes and decreasing to 15.8 g/minute after 30 minutes (n = 6). Study 4 examined the effects of breed, BW, exercise, and gender in 71 horses. In Clydesdales, BW affected ROI (P < .05), and Clydesdales had a faster ROI than Thoroughbreds of similar BW (81.8 ± 6.8 vs. 66.0 ± 3.35 g/minute; P < .05). Exercise level, age, and gender did not impact ROI significantly. The results highlight the effectiveness of feeding chaff to slow ROI and demonstrate the need for a standardized protocol if ROI is to be compared between different studies.
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Affiliation(s)
- Tara E Campbell
- School of Animal and Veterinary Sciences, Charles Sturt University, Wagga Wagga, NSW 2650, Australia
| | - Hunter Doughty
- School of Animal and Veterinary Sciences, Charles Sturt University, Wagga Wagga, NSW 2650, Australia
| | - Patricia A Harris
- Equine Studies Group, WALTHAM Centre for Pet Nutrition, Waltham-on-the-Wolds, Leicestershire LE14 4RT, United Kingdom
| | - Melody A de Laat
- Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, Queensland 4001, Australia
| | - Martin N Sillence
- Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, Queensland 4001, Australia.
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Bochnia M, Goetz F, Wensch-Dorendorf M, Koelln M, Zeyner A. Chewing patterns in horses during the intake of variable quantities of two pelleted compound feeds differing in their physical characteristics only. Res Vet Sci 2019; 125:189-194. [PMID: 31254716 DOI: 10.1016/j.rvsc.2019.06.014] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Revised: 05/29/2019] [Accepted: 06/19/2019] [Indexed: 11/28/2022]
Abstract
Pelleted feeds (PF) are popular in horse nutrition because of high palatability and improved feeding hygiene, but ingestion is faster for PF than for cereals or muesli feed. The aim of the study was to evaluate whether variable amounts of two PFs produced with different physical properties from the same batch of feed can affect feed intake patterns in horses. Chewing patterns were measured in six warmblood mares (519 ± 36.3 kg) on two PFs (small-sized PF1: ø 5 mm, length 21.9 ± 4.97 mm, large-sized PF2: edge length 15.6 ± 0.14 × 15.6 ± 0.08 mm, length 54.4 ± 9.59 mm) in three different amounts (1.0, 1.5, 2.0 kg) once per day additional to hay. PF 2 was ingested faster than PF1 for the meal size 1.0 kg, but PF 1 was ingested more rapidly with a reduced chewing intensity if the offered meal size increased. The ingestion of PF 2 tendentially elevated the chewing intensity at higher meal sizes. An additional, but inverted meal size effect compared to 1.0 kg, was observed for 1.5 kg, where PF 1 was ingested at a higher speed combined with a lower chewing intensity compared to PF 2. Independent from the offered amount, PF 2 induced a markedly increased saliva production combined with a higher daily water intake. Larger-sized pellets seem to intensify the chewing process and decelerate the ingestion time if the meal size becomes larger.
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Affiliation(s)
- Mandy Bochnia
- Group Animal Nutrition, Martin Luther University Halle-Wittenberg, Institute for Agricultural and Nutritional Sciences, Halle, Saale, Germany.
| | - Franziska Goetz
- Group Animal Nutrition, Martin Luther University Halle-Wittenberg, Institute for Agricultural and Nutritional Sciences, Halle, Saale, Germany
| | - Monika Wensch-Dorendorf
- Biometrics and Informatics in Agricultural Group, Martin Luther University Halle-Wittenberg, Institute for Agricultural and Nutritional Sciences, Halle, Saale, Germany
| | - Mareike Koelln
- University of Veterinary Medicine Hannover Foundation, Institute of Animal Nutrition, Hannover, Germany
| | - Annette Zeyner
- Group Animal Nutrition, Martin Luther University Halle-Wittenberg, Institute for Agricultural and Nutritional Sciences, Halle, Saale, Germany
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