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Schumm YR, Masello JF, Vreugdenhil-Rowlands J, Fischer D, Hillerich K, Quillfeldt P. Diet composition of wild columbiform birds: next-generation sequencing of plant and metazoan DNA in faecal samples. THE SCIENCE OF NATURE - NATURWISSENSCHAFTEN 2023; 110:38. [PMID: 37480393 PMCID: PMC10363069 DOI: 10.1007/s00114-023-01863-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 06/27/2023] [Accepted: 06/28/2023] [Indexed: 07/24/2023]
Abstract
Accurate knowledge of a species' diets is fundamental to understand their ecological requirements. Next-generation sequencing technology has become a powerful and non-invasive tool for diet reconstruction through DNA metabarcoding. Here, we applied those methods on faecal samples of Common Woodpigeons Columba palumbus, European Turtle Doves Streptopelia turtur, and Stock Doves C. oenas to investigate their dietary composition. By applying primer pairs targeting both the ITS2 region of plant nuclear DNA and the mitochondrial COI region of metazoan DNA, we provide a complete picture of the food ingested and estimate the dietary overlap between the columbiform species during the breeding season. Animal DNA was present very rarely, and a diverse range of plants from the class Spermatopsida dominated the diet, with Asteraceae, Brassicaceae, Cucurbitaceae, Fabaceae, and Poaceae as the most frequently represented families. Generally, we detected a variability between species but also amongst individual samples. Plant species already known from previous studies, mainly visual analyses, could be confirmed for our individuals sampled in Germany and the Netherlands. Our molecular approach revealed new plant taxa, e.g. plants of the families Malvaceae for Woodpigeons, Lythraceae for Turtle Doves, and Pinaceae for Stock Doves, not found in previous studies using visual analyses. Although most of the plant species observed were of wild origin, the majority of cultivated plants found were present in higher frequencies of occurrence, suggesting that cultivated food items likely constitute an important part of the diet of the studied species. For Turtle Doves, a comparison with previous studies suggested regional differences, and that food items (historically) considered as important part of their diet, such as Fumitory Fumaria sp. and Chickweed Stellaria media, were missing in our samples. This indicates that regional variations as well as historic and current data on diet should be considered to plan tailored seed mixtures, which are currently proposed as an important management measure for conservation of the rapidly declining Turtle Dove.
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Affiliation(s)
- Yvonne R Schumm
- Department of Animal Ecology & Systematics, Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany.
| | - Juan F Masello
- Department of Animal Ecology & Systematics, Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany
| | | | - Dominik Fischer
- Clinic for Birds, Reptiles, Amphibians and Fish, Veterinary Faculty, Justus Liebig University, Frankfurter Strasse 114, 35392, Giessen, Germany
- Zoo Wuppertal, Hubertusallee 30, 42117, Wuppertal, Germany
| | | | - Petra Quillfeldt
- Department of Animal Ecology & Systematics, Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany
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Masello JF, Rast W, Schumm YR, Metzger B, Quillfeldt P. Year-round behavioural time budgets of common woodpigeons inferred from acceleration data using machine learning. Behav Ecol Sociobiol 2023. [DOI: 10.1007/s00265-023-03306-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
Abstract
Abstract
Accelerometers capture rapid changes in animal motion, and the analysis of large quantities of such data using machine learning algorithms enables the inference of broad animal behaviour categories such as foraging, flying, and resting over long periods of time. We deployed GPS-GSM/GPRS trackers with tri-axial acceleration sensors on common woodpigeons (Columba palumbus) from Hesse, Germany (forest and urban birds) and from Lisbon, Portugal (urban park). We used three machine learning algorithms, Random Forest, Support Vector Machine, and Extreme Gradient Boosting, to classify the main behaviours of the birds, namely foraging, flying, and resting and calculated time budgets over the breeding and winter season. Woodpigeon time budgets varied between seasons, with more foraging time during the breeding season than in winter. Also, woodpigeons from different sites showed differences in the time invested in foraging. The proportion of time woodpigeons spent foraging was lowest in the forest habitat from Hesse, higher in the urban habitat of Hesse, and highest in the urban park in Lisbon. The time budgets we recorded contrast to previous findings in woodpigeons and reaffirm the importance of considering different populations to fully understand the behaviour and adaptation of a particular species to a particular environment. Furthermore, the differences in the time budgets of Woodpigeons from this study and previous ones might be related to environmental change and merit further attention and the future investigation of energy budgets.
Significance statement
In this study we took advantage of accelerometer technology and machine learning methods to investigate year-round behavioural time budgets of wild common woodpigeons (Columba palumbus). Our analysis focuses on identifying coarse-scale behaviours (foraging, flying, resting) using various machine learning algorithms. Woodpigeon time budgets varied between seasons and among sites. Particularly interesting is the result showing that urban woodpigeons spend more time foraging than forest conspecifics. Our study opens an opportunity to further investigate and understand how a successful bird species such as the woodpigeon copes with increasing environmental change and urbanisation. The increase in the proportion of time devoted to foraging might be one of the behavioural mechanisms involved but opens questions about the costs associated to such increase in terms of other important behaviours.
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Schumm YR, Masello JF, Cohou V, Mourguiart P, Metzger B, Rösner S, Quillfeldt P. Should I stay or should I fly? Migration phenology, individual-based migration decision and seasonal changes in foraging behaviour of Common Woodpigeons. Naturwissenschaften 2022; 109:44. [PMID: 35976443 PMCID: PMC9385845 DOI: 10.1007/s00114-022-01812-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 05/24/2022] [Accepted: 07/29/2022] [Indexed: 11/26/2022]
Abstract
Migration is used by many species as a strategy to deal with a seasonally changing environment. For some species, migration patterns can vary across different or even within the same breeding area. The Common Woodpigeon Columba palumbus, an abundant and widespread Palearctic species, exhibits three migratory strategies (strictly migratory, partially migratory and resident) across its European breeding grounds. Based on ring recoveries and satellite tracking data, we investigated the migration and foraging behaviour of Woodpigeons breeding in Southwestern Europe (Portugal) and Central Europe (Germany). We found that individuals could be classified as residents (Portugal) or partial migrants (Germany), with migrating individuals following the European sector of the East Atlantic flyway, and mainly wintering in France. In addition to general data on migration phenology, we provide evidence for different migration strategies (migration of varying distances or resident behaviour), low wintering site fidelity and the use of multiple wintering sites. Furthermore, tracking data provided information on migratory behaviour in consecutive years, clearly showing that individuals may switch migratory strategies (resident vs. migrant) between years, i.e. are facultative partial migrants. While individuals from Portugal mainly stayed within a large park (‘green urban area’) year-round, Woodpigeons from the city of Giessen (Germany) regularly left the urban area to forage on surrounding farmland (with an average distance covered of 5.7 km), particularly from July to September. Overall, our results highlight the behavioural plasticity in Woodpigeons in terms of foraging and migration strategies within and amongst individuals as well as populations.
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Affiliation(s)
- Yvonne R Schumm
- Department of Animal Ecology & Systematics, Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany.
| | - Juan F Masello
- Department of Animal Ecology & Systematics, Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany
| | - Valerie Cohou
- GIFS France (Groupe d'investigations Sur La Faune Sauvage, France) - 111, Chemin de L'Herté, BP 10, 40465, Pontonx-sur-Adour, France
| | - Philippe Mourguiart
- GIFS France (Groupe d'investigations Sur La Faune Sauvage, France) - 111, Chemin de L'Herté, BP 10, 40465, Pontonx-sur-Adour, France
| | | | - Sascha Rösner
- Conservation Ecology, Department of Biology, Philipps-Universität Marburg, Karl-von-Frisch-Straße 8, 35043, Marburg, Germany
| | - Petra Quillfeldt
- Department of Animal Ecology & Systematics, Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany
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El-Mansi AA, El-Bealy EA, Rady AM, Abumandour MA, El-Badry DA. Macro- and microstructures of the digestive tract in the Eurasian collared dove, Streptopelia decaocto (Frivaldszky 1838): Adaptive interplay between structure and dietary niche. Microsc Res Tech 2021; 84:2837-2856. [PMID: 34036668 DOI: 10.1002/jemt.23843] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Revised: 05/15/2021] [Accepted: 05/16/2021] [Indexed: 11/06/2022]
Abstract
We describe the functional morphology of the digestive tract of the Eurasian collared dove, Streptopelia decaocto using anatomical, morphometric, histological, histochemical, and ultrastructure techniques, and relate our findings to the species' dietary niche. Our results revealed that the esophagus is displaced on both sides of the neck and has highly folded tunica mucosa, which confer greater elasticity for efficient swallowing and passage of food to the crop. The proventriculus is delicate and its mucosal layer contains polymorphic glands with dense profound and superficial secretory units that open to the luminal surface by gastric pores. The ventriculus is biconvex and lined with a keratinized koilin membrane. The tubular glands within the mucosal lining include the isthmus, the neck, and the basal segment that comprise chief and basal cells with prominent nuclei. At the cuticle-mucosal interface, pyramidal vertical rodlets of the cuticle are secreted and superficially covered by a thin film of a horizontal matrix. The mucosa of the ileum form pyramidal villi that are oriented perpendicularly to the central lumen. Enterocytes infiltrated with goblet cells make up the epithelial lining of the villi. There are subtle differences in the thicknesses of corresponding tunics together with histochemical reactions of alcian blue (AB) and Masson-Goldner trichrome (MT) for their microstructures. Overall, our findings reveal remarkable convergence of both macro-and microstructures in S. decaocto to other granivorous species, and offer further evidence of the close association between functional morphology and feeding style relative to food swallowing, digestion, and absorption.
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Affiliation(s)
- Ahmed A El-Mansi
- Biology Department, Faculty of Science, King Khalid University, Abha, Saudi Arabia.,Zoology Department, Faculty of Science, Mansoura University, Mansoura, Egypt
| | - Eman A El-Bealy
- Biology Department, Faculty of Science, King Khalid University, Abha, Saudi Arabia
| | - Ahmed M Rady
- Biology Department, Faculty of Science, King Saud University, Riyadh, Saudi Arabia
| | - Mohamed A Abumandour
- Anatomy and Embryology Department, Faculty of Veterinary Medicine, Alexandria University, Behera, Egypt
| | - Dina A El-Badry
- Zoology Department, Faculty of Science, Mansoura University, Mansoura, Egypt
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