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Marzuki I, Rosmiati R, Mustafa A, Sahabuddin S, Tarunamulia T, Susianingsih E, Hendrajat EA, Sahrijanna A, Muslimin M, Ratnawati E, Kamariah K, Nisaa K, Herlambang S, Gunawan S, Santi IS, Isnawan BH, Kaseng ES, Septiningsih E, Asaf R, Athirah A, Basri B. Potential Utilization of Bacterial Consortium of Symbionts Marine Sponges in Removing Polyaromatic Hydrocarbons and Heavy Metals, Review. BIOLOGY 2023; 12:86. [PMID: 36671778 PMCID: PMC9855174 DOI: 10.3390/biology12010086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 11/17/2022] [Accepted: 12/08/2022] [Indexed: 01/07/2023]
Abstract
Toxic materials in waste generally contain several components of the global trending pollutant category, especially PAHs and heavy metals. Bioremediation technology for waste management that utilizes microorganisms (bacteria) has not been fully capable of breaking down these toxic materials into simple and environmentally friendly chemical products. This review paper examines the potential application of a consortium of marine sponge symbionts with high performance and efficiency in removing PAHs and heavy metal contaminants. The method was carried out through a review of several related research articles by the author and published by other researchers. The results of the study conclude that the development of global trending pollutant (GTP) bioremediation technology could be carried out to increase the efficiency of remediation. Several types of marine sponge symbiont bacteria, hydrocarbonoclastic (R-1), metalloclastic (R-2), and metallo-hydro-carbonoclastic (R-3), have the potential to be applied to improve waste removal performance. A consortium of crystalline bacterial preparations is required to mobilize into GTP-exposed sites rapidly. Bacterial symbionts of marine sponges can be traced mainly to sea sponges, whose body surface is covered with mucus.
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Affiliation(s)
- Ismail Marzuki
- Department of Chemical Engineering, Fajar University, Makassar 90231, South Sulawesi, Indonesia
| | - Rosmiati Rosmiati
- Research Center for Fishery National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Akhmad Mustafa
- Research Center for Fishery National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Sahabuddin Sahabuddin
- Research Center for Fishery National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Tarunamulia Tarunamulia
- Research Center for Fishery National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Endang Susianingsih
- Research Center for Fishery National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Erfan Andi Hendrajat
- Research Center for Fishery National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Andi Sahrijanna
- Research Center for Fishery National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Muslimin Muslimin
- Research Center for Fishery National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Erna Ratnawati
- Research Center for Fishery National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Kamariah Kamariah
- Research Center for Fishery National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Khairun Nisaa
- Research Center for Fishery National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Susila Herlambang
- Soil Science Departement of Agriculture Faculty Universitas Pembangunan Nasional Veteran, Yogyakarta 55283, DI Yogyakarta, Indonesia
| | - Sri Gunawan
- Department of Agrotechnology, Institut Pertanian Stiper, Yogyakarta 55283, DI Yogyakarta, Indonesia
| | - Idum Satia Santi
- Department of Agrotechnology, Institut Pertanian Stiper, Yogyakarta 55283, DI Yogyakarta, Indonesia
| | - Bambang Heri Isnawan
- Department of Agrotechnology, Universitas Muhammadiyah Yogyakarta, Bantul 55183, DI Yogyakarta, Indonesia
| | - Ernawati Syahruddin Kaseng
- Agricultural Technology Education Department, Faculty of Engineering, Makassar State University, Makassar 90222, South Sulawesi, Indonesia
| | - Early Septiningsih
- Research Center for Conservation of Marine and Inland Water Resources, National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Ruzkiah Asaf
- Research Center for Conservation of Marine and Inland Water Resources, National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Admi Athirah
- Research Center for Conservation of Marine and Inland Water Resources, National Research and Innovation Agency, Cibinong 16911, West Java, Indonesia
| | - Basri Basri
- Institute of Health Science (STIK), Makassar 90231, South Sulawesi, Indonesia
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Hong S, Kim Y, Lee Y, Yoon SJ, Lee C, Liu P, Kwon BO, Hu W, Khim JS. Distributions and potential sources of traditional and emerging polycyclic aromatic hydrocarbons in sediments from the lower reach of the Yangtze River, China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 815:152831. [PMID: 34998741 DOI: 10.1016/j.scitotenv.2021.152831] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 12/22/2021] [Accepted: 12/28/2021] [Indexed: 06/14/2023]
Abstract
This study investigated the current contamination status and potential sources of traditional and emerging polycyclic aromatic hydrocarbons (t-PAHs and e-PAHs) in the sediments across a wide area of the Yangtze River, spanning nine cities. Fifty-seven sediment samples were collected in 2019, from which 15 t-PAHs and 11 e-PAHs were analyzed using GC-MSD. In addition, organic carbon (OC), total nitrogen (TN), and carbon and nitrogen stable isotope ratios (δ13C and δ15N) in sediments were measured to evaluate associations with PAHs contamination. OC, TN, and their stable isotope ratios showed a wide range of site-specific contents and values, indicating high variation in contamination and sources. Concentrations of t-PAHs and e-PAHs in sediments ranged from 0.6 to 200,000 ng g-1 dry weight (dw) and 1.1 to 20,000 ng g-1 dw, respectively. Hotspot sites located in Nanjing (PuKou), Taizhou (JingJiang), and Suzhou (ZhangJiaGang). PAHs contamination reflected land use type and human activity in the surrounding area. Positive matrix factorization (PMF) modeling showed that, on average (n = 57), vehicle emissions were the most dominant contribution (57%), followed by petroleum (28%) and fossil fuel combustion (15%). Sites with high PAHs contamination in sediments were of severe ecological risk. Contributions to the potential risks of PAHs were most significant in the order of dibenz[a,h]anthracene, benzo[b]fluoranthene, and benzo[a]pyrene. The primary origin of these compounds appeared to be fossil fuel combustion. The results of this study are expected to provide useful baseline data on the current contamination status and potential sources of traditional and emerging pollutants in the sediments of the Yangtze River, China.
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Affiliation(s)
- Seongjin Hong
- Department of Marine Environmental Science, Chungnam National University, Daejeon 34134, Republic of Korea
| | - Youngnam Kim
- Department of Marine Environmental Science, Chungnam National University, Daejeon 34134, Republic of Korea
| | - Yeonjung Lee
- Marine Ecosystem Research Center, Korea Institute of Ocean Science and Technology, Busan 49111, Republic of Korea
| | - Seo Joon Yoon
- School of Earth and Environmental Sciences, Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea
| | - Changkeun Lee
- School of Earth and Environmental Sciences, Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea
| | - Peng Liu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Bong-Oh Kwon
- Department of Marine Biotechnology, Kunsan National University, Kunsan 54150, Republic of Korea
| | - Wenyou Hu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
| | - Jong Seong Khim
- School of Earth and Environmental Sciences, Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.
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Soil Characteristics Constrain the Response of Microbial Communities and Associated Hydrocarbon Degradation Genes during Phytoremediation. Appl Environ Microbiol 2021; 87:AEM.02170-20. [PMID: 33097512 DOI: 10.1128/aem.02170-20] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Accepted: 10/18/2020] [Indexed: 12/21/2022] Open
Abstract
Rhizodegradation is a promising cleanup technology where microorganisms degrade soil contaminants in the rhizosphere. A symbiotic relationship is expected to occur between plant roots and soil microorganisms in contaminated soils that enhances natural microbial degradation. However, little is known about how different initial microbiotas influence the rhizodegradation outcome. Recent studies have hinted that soil initial diversity has a determining effect on the outcome of contaminant degradation. To test this, we either planted (P) or not (NP) balsam poplars (Populus balsamifera) in two soils of contrasting diversity (agricultural and forest) that were contaminated or not with 50 mg kg-1 of phenanthrene (PHE). The DNA from the rhizosphere of the P and the bulk soil of the NP pots was extracted and the bacterial genes encoding the 16S rRNA, the PAH ring-hydroxylating dioxygenase alpha subunits (PAH-RHDα) of Gram-positive and Gram-negative bacteria, and the fungal ITS region were sequenced to characterize the microbial communities. The abundances of the PAH-RHDα genes were quantified by real-time quantitative PCR. Plant presence had a significant effect on PHE degradation only in the forest soil, whereas both NP and P agricultural soils degraded the same amount of PHE. Fungal communities were mainly affected by plant presence, whereas bacterial communities were principally affected by the soil type, and upon contamination the dominant PAH-degrading community was similarly constrained by soil type. Our results highlight the crucial importance of soil microbial and physicochemical characteristics in the outcome of rhizoremediation.IMPORTANCE Polycyclic aromatic hydrocarbons (PAH) are a group of organic contaminants that pose a risk to ecosystems' health. Phytoremediation is a promising biotechnology with the potential to restore PAH-contaminated soils. However, some limitations prevent it from becoming the remediation technology of reference, despite being environmentally friendlier than mainstream physicochemical alternatives. Recent reports suggest that the original soil microbial diversity is the key to harnessing the potential of phytoremediation. Therefore, this study focused on determining the effect of two different soil types in the fate of phenanthrene (a polycyclic aromatic hydrocarbon) under balsam poplar remediation. Poplar increased the degradation of phenanthrene in forest, but not in agricultural soil. The fungi were affected by poplars, whereas total bacteria and specific PAH-degrading bacteria were constrained by soil type, leading to different degradation patterns between soils. These results highlight the importance of performing preliminary microbiological studies of contaminated soils to determine whether plant presence could improve remediation rates or not.
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Bellino A, Baldantoni D, Picariello E, Morelli R, Alfani A, De Nicola F. Role of different microorganisms in remediating PAH-contaminated soils treated with compost or fungi. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 252:109675. [PMID: 31614261 DOI: 10.1016/j.jenvman.2019.109675] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Revised: 10/02/2019] [Accepted: 10/02/2019] [Indexed: 06/10/2023]
Abstract
Microbial degradation is the main responsible for polycyclic aromatic hydrocarbons (PAHs) removal from contaminated soils, and the understanding of this process is pivotal to define effective bioremediation approaches. To evaluate the contribution of several microbial groups in soil anthracene and benzo[a]pyrene degradation, the analysis of phospholipid fatty acid (PLFA) profiles and machine learning techniques were employed. To this end, PLFAs and PAH concentrations were analysed, along 274 days of incubation in mesocosms, in soils artificially contaminated with anthracene and benzo[a]pyrene, subjected to different treatments: untreated soil and soils treated with biowaste compost or fungal consortium. Random forest models, figuring anthracene or benzo[a]pyrene concentrations as dependent variables and PLFAs as predictors, were then built to evaluate the contribution of each variable in PAH degradation. PLFA profiles varied substantially among soil treatments and along time, with the increase of Actinomycetes in soils added with fungi and other Gram+ bacteria in compost amended soils. The former, together with fungi, are primarily responsible for anthracene and benzo[a]pyrene degradation in both treated soils, a process in which also metanotrophs and other Gram+ and Gram- bacteria participate. In untreated soil, the cooperation of a multitude of different microorganisms was, instead, responsible for PAH removal, a process with lower efficiency in respect to treated soils.
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Affiliation(s)
- Alessandro Bellino
- Dip. Chimica e Biologia "Adolfo Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, SA, Italy
| | - Daniela Baldantoni
- Dip. Chimica e Biologia "Adolfo Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, SA, Italy.
| | - Enrica Picariello
- Dip. Scienze e Tecnologie, Università degli Studi del Sannio, Via F. De Sanctis, 82100, Benevento, Italy
| | - Raffaella Morelli
- Dip. Chimica e Biologia "Adolfo Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, SA, Italy; Dip. Ambiente e agricoltura di montagna, Centro di Trasferimento Tecnologico, Fondazione Edmund Mach, Via Mach 1, 38010, San Michele all'Adige, TN, Italy
| | - Anna Alfani
- Dip. Chimica e Biologia "Adolfo Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, SA, Italy
| | - Flavia De Nicola
- Dip. Scienze e Tecnologie, Università degli Studi del Sannio, Via F. De Sanctis, 82100, Benevento, Italy
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Leal AJ, Rodrigues EM, Leal PL, Júlio ADL, Fernandes RDCR, Borges AC, Tótola MR. Changes in the microbial community during bioremediation of gasoline-contaminated soil. Braz J Microbiol 2016; 48:342-351. [PMID: 28034596 PMCID: PMC5470457 DOI: 10.1016/j.bjm.2016.10.018] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2016] [Revised: 08/26/2016] [Accepted: 10/05/2016] [Indexed: 01/11/2023] Open
Abstract
We aimed to verify the changes in the microbial community during bioremediation of gasoline-contaminated soil. Microbial inoculants were produced from successive additions of gasoline to municipal solid waste compost (MSWC) previously fertilized with nitrogen-phosphorous. To obtain Inoculant A, fertilized MSWC was amended with gasoline every 3 days during 18 days. Inoculant B received the same application, but at every 6 days. Inoculant C included MSWC fertilized with N–P, but no gasoline. The inoculants were applied to gasoline-contaminated soil at 10, 30, or 50 g/kg. Mineralization of gasoline hydrocarbons in soil was evaluated by respirometric analysis. The viability of the inoculants was evaluated after 103 days of storage under refrigeration or room temperature. The relative proportions of microbial groups in the inoculants and soil were evaluated by FAME. The dose of 50 g/kg of inoculants A and B led to the largest CO2 emission from soil. CO2 emissions in treatments with inoculant C were inversely proportional to the dose of inoculant. Heterotrophic bacterial counts were greater in soil treated with inoculants A and B. The application of inoculants decreased the proportion of actinobacteria and increased of Gram-negative bacteria. Decline in the density of heterotrophic bacteria in inoculants occurred after storage. This reduction was bigger in inoculants stored at room temperature. The application of stored inoculants in gasoline-contaminated soil resulted in a CO2 emission twice bigger than that observed in uninoculated soil. We concluded that MSWC is an effective material for the production of microbial inoculants for the bioremediation of gasoline-contaminated soil.
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Affiliation(s)
- Aline Jaime Leal
- Instituto Federal Sul-rio-grandense, Bagé, Rio Grande do Sul, Brazil
| | - Edmo Montes Rodrigues
- Universidade Federal de Viçosa, Departamento de Microbiologia, Laboratório de Biotecnologia Ambiental e Biodiversidade, Viçosa, Minas Gerais, Brazil.
| | - Patrícia Lopes Leal
- Universidade Federal de Viçosa, Departamento de Microbiologia, Laboratório de Biotecnologia Ambiental e Biodiversidade, Viçosa, Minas Gerais, Brazil
| | - Aline Daniela Lopes Júlio
- Universidade Federal de Viçosa, Departamento de Microbiologia, Laboratório de Biotecnologia Ambiental e Biodiversidade, Viçosa, Minas Gerais, Brazil
| | - Rita de Cássia Rocha Fernandes
- Universidade Federal de Viçosa, Departamento de Microbiologia, Laboratório de Biotecnologia Ambiental e Biodiversidade, Viçosa, Minas Gerais, Brazil
| | - Arnaldo Chaer Borges
- Universidade Federal de Viçosa, Departamento de Microbiologia, Laboratório de Biotecnologia Ambiental e Biodiversidade, Viçosa, Minas Gerais, Brazil
| | - Marcos Rogério Tótola
- Universidade Federal de Viçosa, Departamento de Microbiologia, Laboratório de Biotecnologia Ambiental e Biodiversidade, Viçosa, Minas Gerais, Brazil.
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