Amphibians in Eurasian otter Lutra lutra diet: osteological identification unveils hidden prey richness and male‐biased predation on anurans

Assessing the Diet of a Predator Using a DNA Metabarcoding Approach

The diet of top predators is vital information needed to determine their ecological function and for their conservation management. However, the elusive habit and low population density of many predators constrains determination of their diets. While the morphological identification of scat contents is the traditional method, DNA metabarcoding has lately proven a more efficient and accurate method of identifying prey taxa. We applied DNA metabarcoding to analyzing the diet of the Eurasian otter (Lutra lutra), a top predator in freshwater ecosystems, using 12S and 16S rRNA mitochondrial primers target vertebrate prey. Diet did not vary among different data removal thresholds of 0.1, 1, 3, and 5%, comprising fishes (>90%), amphibians and birds (>2%), and occasionally mammals (<2%). Both 12S and 16S primers revealed similar otter diets, indicating that a single set of primers with a higher threshold is cost-effective for detecting the main prey taxa. Using 12S primers and a 5% threshold, we found no seasonal variation of otter diet in the Tangjiahe National Nature Reserve. A different prey community was found outside the reserve, which resulted in different prey composition for otters. However, prey taxon richness was not different between otters in- and outside the reserve. Otters preferred Schizothorax spp., the largest-sized fish species in the reserve, whereas they mainly preyed on Triplophysa bleekeri, a small-sized fish species, outside the reserve. Otters’ flexible feeding strategy reflect their high adaptability. However, greater human disturbance outside the reserve may present significant challenges to otters by altering prey communities and reducing prey profitability. Combining fecal DNA metabarcoding and local fish survey will provide opportunities for more detailed studies on the impact of different levels of human disturbances on prey communities and otters.

Eurasian otter Lutra lutra diet mirrors the decline of native fish assemblages in a semi-arid catchment (River Segura, SE Spain)

In semi-arid environments, the effects of irregularly distributed rainfall, flow regulation and water inter-basin transfer enhance the spread of non-native fish to the detriment of native communities. In the River Segura, since the 1980s the number of non-native fish species has progressively increased, also because of the building of water transfer facility connecting the rivers Segura and Tajo. With the aim of highlighting how man-driven changes in the diversity of fish communities affect the diet of top-predators, we compared Eurasian otter Lutra lutra diet in the span of 20 years, i.e. 1997–98 vs. 2016–19. As habitat quality affects the condition of Andalusian barbel Luciobarbus sclateri, the most widespread native fish, we also compared the size of preyed barbels to point out whether human activities may have lowered their profitability to otters. Fish and introduced red swamp crayfish Procambarus clarkii formed the bulk of otter diet in both study periods. In 2016–19 the contribution of non-native species to otter diet increased significantly, both for crayfish and fish, which included ten non-native species. Otter feeding habits faithfully mirrored the variation in the composition of the fish community and confirmed the importance of crayfish as alternative-to-fish prey in the Iberian Peninsula. The average length of preyed barbels was significantly lower in the second study period, consistently with a decline in barbel profitability for otters.

Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison)

In the UK, the native European otter (Lutra lutra) and invasive American mink (Neovison vison) have experienced concurrent declines and expansions. Currently, the otter is recovering from persecution and waterway pollution, whereas the mink is in decline due to population control and probable interspecific interaction with the otter. We explored the potential of DNA metabarcoding for investigating diet and niche partitioning between these mustelids. Otter spraints (n = 171) and mink scats (n = 19) collected from three sites (Malham Tarn, River Hull and River Glaven) in northern and eastern England were screened for vertebrates using high-throughput sequencing. Otter diet mainly comprised aquatic fishes (81.0%) and amphibians (12.7%), whereas mink diet predominantly consisted of terrestrial birds (55.9%) and mammals (39.6%). The mink used a lower proportion (20%) of available prey (n = 40 taxa) than the otter and low niche overlap (0.267) was observed between these mustelids. Prey taxon richness of mink scats was lower than otter spraints and beta diversity of prey communities was driven by taxon turnover (i.e. the otter and mink consumed different prey taxa). Considering otter diet only, prey taxon richness was higher in spraints from the River Hull catchment and beta diversity of prey communities was driven by taxon turnover (i.e. the otter consumed different prey taxa at each site). Studies using morphological faecal analysis may misidentify the predator as well as prey items. Faecal DNA metabarcoding can resolve these issues and provide more accurate and detailed dietary information. When scaled up across multiple habitat types, DNA metabarcoding should greatly improve future understanding of resource use and niche overlap between the otter and mink.

Reciprocal Role of Salamanders in Aquatic Energy Flow Pathways

Many species of salamanders (newts and salamanders per se) have a pivotal role in energy flow pathways as they include individuals functioning as prey, competitors, and predators. Here, I synthesize historic and contemporary research on the reciprocal ecological role of salamanders as predators and prey in aquatic systems. Salamanders are a keystone in ecosystem functioning through a combination of top–down control, energy transfer, nutrient cycling processes, and carbon retention. The aquatic developmental stages of salamanders are able to feed on a wide variety of invertebrate prey captured close to the bottom as well as on small conspecifics (cannibalism) or other sympatric species, but can also consume terrestrial invertebrates on the water surface. This capacity to consume allochthonous resources (terrestrial invertebrates) highlights the key role of salamanders as couplers of terrestrial and aquatic ecosystems (i.e., aquatic–terrestrial linkages). Salamanders are also an important food resource for other vertebrates such as fish, snakes, and mammals, covering the energy demands of these species at higher trophic levels. This study emphasizes the ecological significance of salamanders in aquatic systems as central players in energy flow pathways, enabling energy mobility among trophic levels (i.e., vertical energy flow) and between freshwater and terrestrial habitats (i.e., lateral energy flow).