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Zhang L, Dietrich CH, Xu Y, Yang Z, Chen M, Pham TH, Le CCV, Qiao L, Matsumura M, Qin D. Unraveling the hierarchical genetic structure of tea green leafhopper,
Matsumurasca onukii
, in East Asia based on SSRs and SNPs. Ecol Evol 2022; 12:e9377. [PMID: 36203634 PMCID: PMC9526121 DOI: 10.1002/ece3.9377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Revised: 08/30/2022] [Accepted: 09/12/2022] [Indexed: 12/02/2022] Open
Abstract
Matsumurasca onukii (Matsuda, R. (1952). Oyo‐Kontyu Tokyo, 8(1): 19–21), one of the dominant pests in major tea production areas in Asia, currently is known to occur in Japan, Vietnam, and China, and severely threatens tea production, quality, and international trade. To elucidate the population genetic structure of this species, 1633 single nucleotide polymorphisms (SNPs) and 18 microsatellite markers (SSRs) were used to genotype samples from 27 sites representing 18 geographical populations distributed throughout the known range of the species in East Asia. Analyses of both SNPs and SSRs showed that M. onukii populations in Yunnan exhibit high‐genetic differentiation and structure compared with the other populations. The Kagoshima (JJ) and Shizuoka (JS) populations from Japan were separated from populations from China by SNPs, but clustered with populations from Jinhua (JH), Yingde (YD), Guilin (GL), Fuzhou (FZ), Hainan (HQ), Leshan (CT), Chongqing (CY), and Zunyi (ZY) tea plantations in China and the Vietnamese Vinh Phuc (VN) population based on the SSR data. In contrast, CT, CY, ZY, and Shaanxi (SX) populations clustered together based on SNPs, but were separated by SSRs. Both marker datasets identified significant geographic differentiation among the 18 populations. Various environmental and anthropogenic factors, including geographical barriers to migration, human transport of hosts (Camellia sinesis [L.] O. Kuntze) and adaptation of M. onukii to various local climatic zones possibly account for the rapid spread of this pest in Asia. The results demonstrate that SNPs from high‐throughput genotyping data can be used to reveal subtle genetic substructure at broad scales in r‐strategist insects.
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Affiliation(s)
- Li Zhang
- Key Laboratory of Plant Protection Resources and Pest Management of the Ministry of Education, Entomological Museum Northwest A&F University Yangling Shaanxi China
- Institute of Jiangxi Oil‐Tea Camellia, Jiujiang University Jiujiang Jiangxi China
| | - Christopher H. Dietrich
- Illinois Natural History Survey Prairie Research Institute, University of Illinois Champaign Illinois USA
| | - Ye Xu
- Key Laboratory of Plant Protection Resources and Pest Management of the Ministry of Education, Entomological Museum Northwest A&F University Yangling Shaanxi China
- College of Agriculture, Jiangxi Agricultural University Nanchang Jiangxi China
| | - Zhaofu Yang
- Key Laboratory of Plant Protection Resources and Pest Management of the Ministry of Education, Entomological Museum Northwest A&F University Yangling Shaanxi China
| | - Maohua Chen
- Key Laboratory of Plant Protection Resources and Pest Management of the Ministry of Education, Entomological Museum Northwest A&F University Yangling Shaanxi China
| | - Thai H. Pham
- Mientrung Institute for Scientific Research, Vietnam National Museum of Nature, VAST Hue Vietnam
- Graduate School of Science and Technology, Vietnam Academy of Science and Technology Hanoi Vietnam
| | - Cuong C. V. Le
- Mientrung Institute for Scientific Research, Vietnam National Museum of Nature, VAST Hue Vietnam
| | - Li Qiao
- College of Agronomy, Xinyang Agricultural and Forestry University Xinyang Henan China
| | - Masaya Matsumura
- Institute for Plant Protection, National Agriculture and Food Research Organization Tsukuba Ibaraki Japan
| | - Daozheng Qin
- Key Laboratory of Plant Protection Resources and Pest Management of the Ministry of Education, Entomological Museum Northwest A&F University Yangling Shaanxi China
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Kennedy SR, Ying Lim J, Ashley Adams S, Krehenwinkel H, Gillespie RG. What is adaptive radiation? Many manifestations of the phenomenon in an iconic lineage of Hawaiian spiders. Mol Phylogenet Evol 2022; 175:107564. [PMID: 35787456 DOI: 10.1016/j.ympev.2022.107564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Revised: 05/27/2022] [Accepted: 06/02/2022] [Indexed: 11/16/2022]
Abstract
Adaptive radiation provides the ideal context for identifying and testing the processes that drive evolutionary diversification. However, different adaptive radiations show a variety of different patterns, making it difficult to come up with universal rules that characterize all such systems. Diversification may occur via several mechanisms including non-adaptive divergence, adaptation to novel environments, or character displacement driven by competition. Here, we characterize the ways these different drivers contribute to present-day diversity patterns, using the exemplary adaptive radiation of Hawaiian long-jawed orbweaver (Tetragnatha) spiders. We present the most taxonomically comprehensive phylogenetic hypothesis to date for this group, using 10 molecular markers and representatives from every known species across the archipelago. Among the lineages that make up this remarkable radiation, we find evidence for multiple diversification modalities. Several clades appear to have diversified in allopatry under a narrow range of ecological conditions, highlighting the role of niche conservatism in speciation. Others have shifted into new environments and evolved traits that appear to be adaptive in those environments. Still others show evidence for character displacement by close relatives, often resulting in convergent evolution of stereotyped ecomorphs. All of the above mechanisms seem to have played a role in giving rise to the exceptional diversity of morphological, ecological and behavioral traits represented among the many species of Hawaiian Tetragnatha. Taking all these processes into account, and testing how they operate in different systems, may allow us to identify universal principles underlying adaptive radiation.
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Affiliation(s)
| | - Jun Ying Lim
- Department of Biological Sciences, National University of Singapore, Singapore
| | - Seira Ashley Adams
- Department of Environmental Science, Policy and Management, University of California Berkeley, USA
| | | | - Rosemary G Gillespie
- Department of Environmental Science, Policy and Management, University of California Berkeley, USA
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Sun H, Jia F, Zhao W, Zhou Z, Li C, Wang J, Yao Y. Population Genetics Reveals That the Western Tianshan Mountains Populations of Agrilus mali (Coleoptera: Buprestidae) May Have Not been Recently Introduced. Front Genet 2022; 13:857866. [PMID: 35401710 PMCID: PMC8988243 DOI: 10.3389/fgene.2022.857866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Accepted: 02/28/2022] [Indexed: 11/13/2022] Open
Abstract
Agrilus mali Matsumura is a wood-boring beetle that aggressively attacks species of the genus Malus, that has recently caused serious damage to the wild apple tree M. sieversii (Lebed.) in the western Tianshan Mountains in Xinjiang. It was first detected there in the early 1990s and spread rapidly, being thus considered a regional invasive pest. To explore the possible outbreak mechanism of the local population and characterize the genetic differentiation of A. mali across different regions of China, we used three mitochondrial genes (COI, COII, and CytB) to investigate the genetic diversity and genetic structure of 17 A. mali populations containing 205 individuals collected from five Chinese provinces. Among them, nine populations were from the western Tianshan Mountains. Ultimately, of the 136 pairwise Fst comparisons, 99 showed high genetic differentiation among overall populations, and Tianshan populations exhibited significant differentiation with most of the non-Tianshan populations. Furthermore, A. mali populations represented relatively abundant haplotypes (54 haplotypes). Nine populations from the Tianshan Mountains showed 32 haplotypes (26 of which were unique), displaying relatively high genetic diversity. Additionally, the Mantel test revealed population genetic differentiation among either overall populations or the Tianshan Mountains populations, likely caused by geographical isolation. Phylogenic relationships showed that all populations clustered into three clades, and Tianshan Mountains populations, including CY, occupied one of the three clades. These results suggest that A. mali in the western Tianshan region has possibly been present in the area for a long period, and may not have been introduced recently. Highly frequent gene flows within Tianshan populations are possibly caused by human activities and may enhance the adaptability of A. mali along the western Tianshan Mountains, leading to periodic outbreaks. These findings enhance our understanding of jewel beetle population genetics and provide valuable information for pest management.
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Affiliation(s)
- Huiquan Sun
- Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China
| | - Feiran Jia
- Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China
| | - Wenxia Zhao
- Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China
| | - Zhongfu Zhou
- Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China
| | - Chengjin Li
- Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China
| | - Jianjun Wang
- Liaoning Academy of Forest Science, Shenyang, China
| | - Yanxia Yao
- Key Laboratory of Forest Protection of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China
- *Correspondence: Yanxia Yao,
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Armstrong EE, Perez-Lamarque B, Bi K, Chen C, Becking LE, Lim JY, Linderoth T, Krehenwinkel H, Gillespie RG. A holobiont view of island biogeography: Unravelling patterns driving the nascent diversification of a Hawaiian spider and its microbial associates. Mol Ecol 2021; 31:1299-1316. [PMID: 34861071 DOI: 10.1111/mec.16301] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 11/16/2021] [Accepted: 11/18/2021] [Indexed: 12/24/2022]
Abstract
The diversification of a host lineage can be influenced by both the external environment and its assemblage of microbes. Here, we use a young lineage of spiders, distributed along a chronologically arranged series of volcanic mountains, to investigate how their associated microbial communities have changed as the spiders colonized new locations. Using the stick spider Ariamnes waikula (Araneae, Theridiidae) on the island of Hawai'i, and outgroup taxa on older islands, we tested whether each component of the "holobiont" (spider hosts, intracellular endosymbionts and gut microbial communities) showed correlated signatures of diversity due to sequential colonization from older to younger volcanoes. To investigate this, we generated ddRAD data for the host spiders and 16S rRNA gene amplicon data from their microbiota. We expected sequential colonizations to result in a (phylo)genetic structuring of the host spiders and in a diversity gradient in microbial communities. The results showed that the host A. waikula is indeed structured by geographical isolation, suggesting sequential colonization from older to younger volcanoes. Similarly, the endosymbiont communities were markedly different between Ariamnes species on different islands, but more homogeneous among A. waikula populations on the island of Hawai'i. Conversely, the gut microbiota, which we suspect is generally environmentally derived, was largely conserved across all populations and species. Our results show that different components of the holobiont respond in distinct ways to the dynamic environment of the volcanic archipelago. This highlights the necessity of understanding the interplay between different components of the holobiont, to properly characterize its evolution.
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Affiliation(s)
- Ellie E Armstrong
- Department of Biology, Stanford University, Stanford, California, USA
| | - Benoît Perez-Lamarque
- Institut de Biologie de l'ENS (IBENS), École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France.,Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum national d'Histoire naturelle, CNRS, Sorbonne Université, EPHE, UA, Paris, France
| | - Ke Bi
- Computational Genomics Resource Laboratory, California Institute for Quantitative Biosciences, University of California, Berkeley, California, USA.,Museum of Vertebrate Zoology, University of California, Berkeley, California, USA.,Ancestry, San Francisco, California, USA
| | - Cerise Chen
- Department of Environmental Science, Policy and Management, University of California, Berkeley, California, USA.,Long Marine Laboratory, University of California, Santa Cruz, California, USA
| | - Leontine E Becking
- Marine Animal Ecology Group, Wageningen University & Research, Wageningen, The Netherlands.,Wageningen Marine Research, Den Helder, The Netherlands
| | - Jun Ying Lim
- School of Biological Sciences, Nanyang Technological University, Singapore
| | - Tyler Linderoth
- Department of Genetics, University of Cambridge, Cambridge, UK
| | - Henrik Krehenwinkel
- Department of Environmental Science, Policy and Management, University of California, Berkeley, California, USA.,Department of Biogeography, Trier University, Trier, Germany
| | - Rosemary G Gillespie
- Department of Environmental Science, Policy and Management, University of California, Berkeley, California, USA
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Hembry DH, Bennett G, Bess E, Cooper I, Jordan S, Liebherr J, Magnacca KN, Percy DM, Polhemus DA, Rubinoff D, Shaw KL, O’Grady PM. Insect Radiations on Islands: Biogeographic Pattern and Evolutionary Process in Hawaiian Insects. THE QUARTERLY REVIEW OF BIOLOGY 2021. [DOI: 10.1086/717787] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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