Benefits from living together? Clades whose species use similar habitats may persist as a result of eco-evolutionary feedbacks

Fewer chromosomes, more co-occurring species within plant lineages: A likely effect of local survival and colonization

PREMISE

Plant lineages differ markedly in species richness globally, regionally, and locally. Differences in whole-genome characteristics (WGCs) such as monoploid chromosome number, genome size, and ploidy level may explain differences in global species richness through speciation or global extinction. However, it is unknown whether WGCs drive species richness within lineages also in a recent, postglacial regional flora or in local plant communities through local extinction or colonization and regional species turnover.

METHODS

We tested for relationships between WGCs and richness of angiosperm families across the Netherlands/Germany/Czechia as a region, and within 193,449 local vegetation plots.

RESULTS

Families that are species-rich across the region have lower ploidy levels and small monoploid chromosomes numbers or both (interaction terms), but the relationships disappear after accounting for continental and local richness of families. Families that are species-rich within occupied localities have small numbers of polyploidy and monoploid chromosome numbers or both, independent of their own regional richness and the local richness of all other locally co-occurring species in the plots. Relationships between WGCs and family species-richness persisted after accounting for niche characteristics and life histories.

CONCLUSIONS

Families that have few chromosomes, either monoploid or holoploid, succeed in maintaining many species in local communities and across a continent and, as indirect consequence of both, across a region. We suggest evolutionary mechanisms to explain how small chromosome numbers and ploidy levels might decrease rates of local extinction and increase rates of colonization. The genome of a macroevolutionary lineage may ultimately control whether its species can ecologically coexist.

Disturbed habitats locally reduce the signal of deep evolutionary history in functional traits of plants

The functioning of present ecosystems reflects deep evolutionary history of locally cooccurring species if their functional traits show high phylogenetic signal (PS). However, we do not understand what drives local PS. We hypothesize that local PS is high in undisturbed and stressful habitats, either due to ongoing local assembly of species that maintained ancestral traits, or to past evolutionary maintenance of ancestral traits within habitat species-pools, or to both. We quantified PS and diversity of 10 traits within 6704 local plant communities across 38 Dutch habitat types differing in disturbance or stress. Mean local PS varied 50-fold among habitat types, often independently of phylogenetic or trait diversity. Mean local PS decreased with disturbance but showed no consistent relationship to stress. Mean local PS exceeded species-pool PS, reflecting nonrandom subsampling from the pool. Disturbance or stress related more strongly to mean local than to species-pool PS. Disturbed habitats harbour species with evolutionary divergent trait values, probably driven by ongoing, local assembly of species: environmental fluctuations might maintain different trait values within lineages through an evolutionary storage effect. If functional traits do not reflect phylogeny, ecosystem functioning might not be contingent on the presence of particular lineages, and lineages might establish evolutionarily novel interactions.

Ecology and Evolution of Gall-Inducing Arthropods: The Pattern From the Terrestrial Fossil Record

Insect and mite galls on land plants have a spotty but periodically rich and abundant fossil record of damage types (DTs), ichnotaxa, and informally described gall morphotypes. The earliest gall is on a liverwort of the Middle Devonian Period at 385 million years ago (Ma). A 70-million-year-long absence of documented gall activity ensues. Gall activity resumes during the Pennsylvanian Period (315 Ma) on vegetative and reproductive axial organs of horsetails, ferns, and probably conifers, followed by extensive diversification of small, early hemipteroid galler lineages on seed-plant foliage during the Permian Period. The end-Permian (P-Tr) evolutionary and ecological crisis extinguished most gall lineages; survivors diversified whose herbivore component communities surpassed pre-P-Tr levels within 10 million years in the mid-to late Triassic (242 Ma). During the late Triassic and Jurassic Period, new groups of galling insects colonized Ginkgoales, Bennettitales, Pinales, Gnetales, and other gymnosperms, but data are sparse. Diversifying mid-Cretaceous (125–90 Ma) angiosperms hosted a major expansion of 24 gall DTs organized as herbivore component communities, each in overlapping Venn-diagram fashion on early lineages of Austrobaileyales, Laurales, Chloranthales, and Eurosidae for the Dakota Fm (103 Ma). Gall diversification continued into the Ora Fm (92 Ma) of Israel with another 25 gall morphotypes, but as ichnospecies on a different spectrum of plant hosts alongside the earliest occurrence of parasitoid attack. The End-Cretaceous (K-Pg) extinction event (66 Ma) almost extinguished host–specialist DTs; surviving gall lineages expanded to a pre-K-Pg level 10 million years later at the Paleocene-Eocene Thermal Maximum (PETM) (56 Ma), at which time a dramatic increase of land surface temperatures and multiplying of atmospheric pCO2 levels induced a significant level of increased herbivory, although gall diversity increased only after the PETM excursion and during the Early Eocene Climatic Optimum (EECO). After the EECO, modern (or structurally convergent) gall morphotypes originate in the mid-Paleogene (49–40 Ma), evidenced by the Republic, Messel, and Eckfeld floras on hosts different from their modern analogs. During subsequent global aridification, the early Neogene (20 Ma) Most flora of the Czech Republic records several modern associations with gallers and plant hosts congeneric with their modern analogs. Except for 21 gall DTs in New Zealand flora, the gall record decreases in richness, although an early Pleistocene (3 Ma) study in France documents the same plant surviving as an endemic northern Iran but with decreasing associational, including gall, host specificity.

Anthropogenic threats to evolutionary heritage of angiosperms in the Netherlands through an increase in high-competition environments

Present biodiversity comprises the evolutionary heritage of Earth's epochs. Lineages from particular epochs are often found in particular habitats, but whether current habitat decline threatens the heritage from particular epochs is unknown. We hypothesized that within a given region, humans threaten specifically habitats that harbor lineages from a particular geological epoch. We expect so because humans threaten environments that dominated and lineages that diversified during these epochs. We devised a new approach to quantify, per habitat type, diversification of lineages from different epochs. For Netherlands, one of the floristically and ecologically best-studied regions, we quantified the decline of habitat types and species in the past century. We defined habitat types based on vegetation classification and used existing ranking of decline of vegetation classes and species. Currently, most declining habitat types and the group of red-listed species are characterized by increased diversification of lineages dating back to Paleogene, specifically to Paleocene-Eocene and Oligocene. Among vulnerable habitat types with large representation of lineages from these epochs were sublittoral and eulittoral zones of temperate seas and 2 types of nutrient-poor, open habitats. These losses of evolutionary heritage would go unnoticed with classical measures of evolutionary diversity. Loss of heritage from Paleocene-Eocene became unrelated to decline once low competition, shade tolerance, and low proportion of non-Apiaceae were accounted for, suggesting that these variables explain the loss of heritage from Paleocene-Eocene. Losses of heritage from Oligocene were partly explained by decline of habitat types occupied by weak competitors and shade-tolerant species. Our results suggest a so-far unappreciated human threat to evolutionary heritage: habitat decline threatens descendants from particular epochs. If the trends persist into the future uncontrolled, there may be no habitats within the region for many descendants of evolutionary ancient epochs, such as Paleogene.

Persistent biotic interactions of a Gondwanan conifer from Cretaceous Patagonia to modern Malesia

Many plant genera in the tropical West Pacific are survivors from the paleo-rainforests of Gondwana. For example, the oldest fossils of the Malesian and Australasian conifer Agathis (Araucariaceae) come from the early Paleocene and possibly latest Cretaceous of Patagonia, Argentina (West Gondwana). However, it is unknown whether dependent ecological guilds or lineages of associated insects and fungi persisted on Gondwanan host plants like Agathis through time and space. We report insect-feeding and fungal damage on Patagonian Agathis fossils from four latest Cretaceous to middle Eocene floras spanning ca. 18 Myr and compare it with damage on extant Agathis. Very similar damage was found on fossil and modern Agathis, including blotch mines representing the first known Cretaceous-Paleogene boundary crossing leaf-mine association, external foliage feeding, galls, possible armored scale insect (Diaspididae) covers, and a rust fungus (Pucciniales). The similar suite of damage, unique to fossil and extant Agathis, suggests persistence of ecological guilds and possibly the component communities associated with Agathis since the late Mesozoic, implying host tracking of the genus across major plate movements that led to survival at great distances. The living associations, mostly made by still-unknown culprits, point to previously unrecognized biodiversity and evolutionary history in threatened rainforest ecosystems.

Passive rewilding may (also) restore phylogenetically rich and functionally resilient forest plant communities

Passive rewilding is increasingly seen as a promising tool to counterbalance biodiversity losses and recover native forest ecosystems. One key question, crucial to understanding assembly processes and conservation issues underlying land-use change, is the extent to which functional and phylogenetic diversity may recover in spontaneous recent woodlands. Here, we compared understorey plant communities of recent woodlands (which result from afforestation on agricultural lands during the 20th century) with those of ancient forests (uninterrupted for several centuries) in a hotspot of farmland abandonment in western Europe. We combined taxonomic, functional, and phylogenetic diversity metrics to detect potential differences in community composition, structure (richness, divergence), conservation importance (functional originality and specialization, evolutionary distinctiveness) and resilience (functional redundancy, response diversity). The recent and ancient forests harbored clearly distinct compositions, especially regarding the taxonomic and phylogenetic facets. Recent woodlands had higher taxonomic, functional and phylogenetic richness and a higher evolutionary distinctiveness, whereas functional divergence and phylogenetic divergence were higher in ancient forests. On another hand, we did not find any significant differences in functional specialization, originality, redundancy, or response diversity between recent and ancient forests. Our study constitutes one of the first empirical pieces of evidence that recent woodlands may spontaneously regain plant communities phylogenetically rich and functionally resilient, at least as much as those of ancient relict forests. As passive rewilding is the cheapest restoration method, we suggest that it should be a very useful tool to restore and conserve native forest biodiversity and functions, especially when forest areas are restricted and fragmented.

Evolutionary response to coexistence with close relatives: increased resistance against specialist herbivores without cost for climatic-stress resistance

Why can hosts coexist with conspecifics or phylogenetically proximate neighbours despite sharing specialist enemies? Do the hosts evolve increased enemy resistance? If so, does this have costs in terms of climatic-stress resistance, or in such neighbourhoods, does climatic-stress select for resistances that are multifunctional against climate and enemies? We studied oak (Quercus petraea) descendants from provenances of contrasting phylogenetic neighbourhoods and climates in a 25-year-old common garden. We found that descendants from conspecific or phylogenetically proximate neighbourhoods had the toughest leaves and fewest leaf miners, but no reduction in climatic-stress resistance. Descendants from such neighbourhoods under cold or dry climates had the highest flavonol and anthocyanin levels and the thickest leaves. Overall, populations facing phylogenetically proximate neighbours can rapidly evolve herbivore resistance, without cost to climatic-stress resistance, but possibly facilitating resistance against cold and drought via multifunctional traits. Microevolution might hence facilitate ecological coexistence of close relatives and thereby macroevolutionary conservatism of niches.

The Deep Past Controls the Phylogenetic Structure of Present, Local Communities

Coexisting species may be evolutionarily proximate or distant, resulting in phylogenetically poor or rich communities. This variation is often considered to result from present assembly processes. We argue that, under certain conditions, deep-past processes might control the phylogenetic diversity of communities. First, deep-past effects involve macroevolutionary processes, such as diversification rate, niche conservatism, or dispersal, in the lineages that constitute communities. Second, deep-past processes in the respective region or in the habitat type play a role, for instance, through age, area, stability, or connectivity. Third, the deep past may affect communities via trophic interactions (i.e., communities of enemies or mutualists or communities of hosts). We suggest that deep-past effects can be identified in local communities by measuring phylogenetic diversity in different species pools. We also show how community phylogenetic diversity results in positive or negative eco-evolutionary feedback, and we identify present-day conservation challenges that may profit from a deep-time perspective.