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Atamian HS, Funk JL. Physiological and transcriptomic responses of two Artemisia californica populations to drought: implications for restoring drought-resilient native communities. Glob Ecol Conserv 2023. [DOI: 10.1016/j.gecco.2023.e02466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/09/2023] Open
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Ostria-Gallardo E, Larama G, Berríos G, Fallard A, Gutiérrez-Moraga A, Ensminger I, Manque P, Bascuñán-Godoy L, Bravo LA. Decoding Gene Networks Modules That Explain the Recovery of Hymenoglossum cruentum Cav. After Extreme Desiccation. FRONTIERS IN PLANT SCIENCE 2020; 11:574. [PMID: 32499805 PMCID: PMC7243127 DOI: 10.3389/fpls.2020.00574] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Accepted: 04/17/2020] [Indexed: 05/17/2023]
Abstract
Hymenoglossum cruentum (Hymenophyllaceae) is a poikilohydric, homoiochlorophyllous desiccation-tolerant (DT) epiphyte fern. It can undergo fast and frequent dehydration-rehydration cycles. This fern is highly abundant at high-humidity/low-light microenvironments within the canopy, although rapid changes in humidity and light intensity are frequent. The objective of this research is to identify genes associated to desiccation-rehydration cycle in the transcriptome of H. cruentum to better understand the genetic dynamics behind its desiccation tolerance mechanism. H. cruentum plants were subjected to a 7 days long desiccation-rehydration process and then used to identify key expressed genes associated to its capacity to dehydrate and rehydrate. The relative water content (RWC) and maximum quantum efficiency (F v/F m) of H. cruentum fronds decayed to 6% and 0.04, respectively, at the end of the desiccation stage. After re-watering, the fern showed a rapid recovery of RWC and F v/F m (ca. 73% and 0.8, respectively). Based on clustering and network analysis, our results reveal key genes, such as UBA/TS-N, DYNLL, and LHC, orchestrating intracellular motility and photosynthetic metabolism; strong balance between avoiding cell death and defense (CAT3, AP2/ERF) when dehydrated, and detoxifying pathways and stabilization of photosystems (GST, CAB2, and ELIP9) during rehydration. Here we provide novel insights into the genetic dynamics behind the desiccation tolerance mechanism of H. cruentum.
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Affiliation(s)
- Enrique Ostria-Gallardo
- Laboratorio de Fisiología Vegetal, Centro de Estudios Avanzados en Zonas Áridas (CEAZA), La Serena, Chile
- Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco, Chile
| | - Giovanni Larama
- Centro de Excelencia de Modelación y Computación Científica, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Temuco, Chile
| | - Graciela Berríos
- Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco, Chile
| | - Ana Fallard
- Laboratorio de Fisiología y Biología Molecular Vegetal, Departamento de Cs. Agronómicas y Recursos Naturales, Facultad de Ciencias Agropecuarias y Forestales, Instituto de Agroindustria, Universidad de La Frontera, Temuco, Chile
| | - Ana Gutiérrez-Moraga
- Instituto de Ciencias Biomédicas, Universidad Autónoma de Chile, Santiago, Chile
| | - Ingo Ensminger
- Department of Biology, University of Toronto, Toronto, ON, Canada
| | - Patricio Manque
- Center for Integrative Biology, Universidad Mayor, Santiago, Chile
| | | | - León A. Bravo
- Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco, Chile
- Laboratorio de Fisiología y Biología Molecular Vegetal, Departamento de Cs. Agronómicas y Recursos Naturales, Facultad de Ciencias Agropecuarias y Forestales, Instituto de Agroindustria, Universidad de La Frontera, Temuco, Chile
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Rowland SD, Zumstein K, Nakayama H, Cheng Z, Flores AM, Chitwood DH, Maloof JN, Sinha NR. Leaf shape is a predictor of fruit quality and cultivar performance in tomato. THE NEW PHYTOLOGIST 2020; 226:851-865. [PMID: 31880321 PMCID: PMC7187315 DOI: 10.1111/nph.16403] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Accepted: 12/14/2019] [Indexed: 05/04/2023]
Abstract
Commercial tomato (Solanum lycopersicum) is one of the most widely grown vegetable crops worldwide. Heirloom tomatoes retain extensive genetic diversity and a considerable range of fruit quality and leaf morphological traits. Here the role of leaf morphology was investigated for its impact on fruit quality. Heirloom cultivars were grown in field conditions, and BRIX by yield (BY) and other traits were measured over a 14-wk period. The complex relationships among these morphological and physiological traits were evaluated using partial least-squares path modeling, and a consensus model was developed. Photosynthesis contributed strongly to vegetative biomass and sugar content of fruits but had a negative impact on yield. Conversely leaf shape, specifically rounder leaves, had a strong positive impact on both fruit sugar content and yield. Cultivars such as Stupice and Glacier, with very round leaves, had the highest performance in both fruit sugar and yield. Our model accurately predicted BY for two commercial cultivars using leaf shape data as input. This study revealed the importance of leaf shape to fruit quality in tomato, with rounder leaves having significantly improved fruit quality. This correlation was maintained across a range of diverse genetic backgrounds and shows the importance of leaf morphology in tomato crop improvement.
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Affiliation(s)
| | | | - Hokuto Nakayama
- Department of Plant BiologyUniversity of CaliforniaDavisCA95616USA
- Gradute School of ScienceUniversity of TokyoHongo Bunkyo‐kuTokyo113‐0033Japan
| | - Zizhang Cheng
- College of ScienceSichuan Agriculture UniversityYaanSichuan Province625014China
| | - Amber M. Flores
- Department of Plant BiologyUniversity of CaliforniaDavisCA95616USA
| | - Daniel H. Chitwood
- Department of Plant BiologyUniversity of CaliforniaDavisCA95616USA
- Department of HorticultureMichigan State UniversityEast LansingMI48824USA
| | - Julin N. Maloof
- Department of Plant BiologyUniversity of CaliforniaDavisCA95616USA
| | - Neelima R. Sinha
- Department of Plant BiologyUniversity of CaliforniaDavisCA95616USA
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Ostria-Gallardo E, Larama G, Berríos G, Fallard A, Gutiérrez-Moraga A, Ensminger I, Bravo LA. A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated to their microhabitat preference. BMC PLANT BIOLOGY 2020; 20:56. [PMID: 32019526 PMCID: PMC7001327 DOI: 10.1186/s12870-019-2182-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2019] [Accepted: 12/03/2019] [Indexed: 05/27/2023]
Abstract
BACKGROUND Filmy-ferns (Hymenophyllaceae) are poikilohydric, homoiochlorophyllous desiccation-tolerant (DT) epiphytes. They can colonize lower and upper canopy environments of humid forest. Filmy-ferns desiccate rapidly (hours), contrasting with DT angiosperms (days/weeks). It has been proposed that desiccation tolerance in filmy-ferns would be associated mainly with constitutive features rather than induced responses during dehydration. However, we hypothesize that the inter-specific differences in vertical distribution would be associated with different dynamics of gene expression within the dehydration or rehydration phases. A comparative transcriptomic analysis with an artificial neural network was done on Hymenophyllum caudiculatum (restricted to lower canopy) and Hymenophyllum dentatum (reach upper canopy) during a desiccation/rehydration cycle. RESULTS Raw reads were assembled into 69,599 transcripts for H. dentatum and 34,726 transcripts for H. caudiculatum. Few transcripts showed significant changes in differential expression (DE). H. caudiculatum had ca. twice DE genes than H. dentatum and higher proportion of increased-and-decreased abundance of genes occurs during dehydration. In contrast, the abundance of genes in H. dentatum decreased significantly when transitioning from dehydration to rehydration. According to the artificial neural network results, H. caudiculatum enhanced osmotic responses and phenylpropanoid related pathways, whilst H. dentatum enhanced its defense system responses and protection against high light stress. CONCLUSIONS Our findings provide a deeper understanding of the mechanisms underlying the desiccation tolerance responses of two filmy ferns and the relationship between the species-specific response and the microhabitats these ferns occupy in nature.
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Affiliation(s)
- Enrique Ostria-Gallardo
- Laboratorio de Fisiología Vegetal, Centro de Estudios Avanzados en Zonas Áridas CEAZA, La Serena, Chile.
- Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco, Chile.
| | - Giovanni Larama
- Centro de Excelencia de Modelación y Computación Científica, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Temuco, Chile
| | - Graciela Berríos
- Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco, Chile
| | - Ana Fallard
- Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco, Chile
| | | | - Ingo Ensminger
- Department of Biology, University of Toronto, Toronto, ON, Canada
| | - León A Bravo
- Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco, Chile.
- Laboratorio de Fisiología y Biología Molecular Vegetal, Departamento de Cs. Agronómicas y Recursos Naturales, Facultad de Cs. Agropecuarias y Forestales, Instituto de Agroindustria, Universidad de La Frontera, Temuco, Chile.
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