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Nguyen KU, Zhang Y, Liu Q, Zhang R, Jin X, Taniguchi M, Miller ES, Lindsey JS. Tolyporphins-Exotic Tetrapyrrole Pigments in a Cyanobacterium-A Review. Molecules 2023; 28:6132. [PMID: 37630384 PMCID: PMC10459692 DOI: 10.3390/molecules28166132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Revised: 08/11/2023] [Accepted: 08/13/2023] [Indexed: 08/27/2023] Open
Abstract
Tolyporphins were discovered some 30 years ago as part of a global search for antineoplastic compounds from cyanobacteria. To date, the culture HT-58-2, comprised of a cyanobacterium-microbial consortium, is the sole known producer of tolyporphins. Eighteen tolyporphins are now known-each is a free base tetrapyrrole macrocycle with a dioxobacteriochlorin (14), oxochlorin (3), or porphyrin (1) chromophore. Each compound displays two, three, or four open β-pyrrole positions and two, one, or zero appended C-glycoside (or -OH or -OAc) groups, respectively; the appended groups form part of a geminal disubstitution motif flanking the oxo moiety in the pyrroline ring. The distinct structures and repertoire of tolyporphins stand alone in the large pigments-of-life family. Efforts to understand the cyanobacterial origin, biosynthetic pathways, structural diversity, physiological roles, and potential pharmacological properties of tolyporphins have attracted a broad spectrum of researchers from diverse scientific areas. The identification of putative biosynthetic gene clusters in the HT-58-2 cyanobacterial genome and accompanying studies suggest a new biosynthetic paradigm in the tetrapyrrole arena. The present review provides a comprehensive treatment of the rich science concerning tolyporphins.
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Affiliation(s)
- Kathy-Uyen Nguyen
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (K.-U.N.); (Y.Z.); (Q.L.); (R.Z.); (X.J.); (M.T.)
| | - Yunlong Zhang
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (K.-U.N.); (Y.Z.); (Q.L.); (R.Z.); (X.J.); (M.T.)
| | - Qihui Liu
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (K.-U.N.); (Y.Z.); (Q.L.); (R.Z.); (X.J.); (M.T.)
| | - Ran Zhang
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (K.-U.N.); (Y.Z.); (Q.L.); (R.Z.); (X.J.); (M.T.)
| | - Xiaohe Jin
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (K.-U.N.); (Y.Z.); (Q.L.); (R.Z.); (X.J.); (M.T.)
| | - Masahiko Taniguchi
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (K.-U.N.); (Y.Z.); (Q.L.); (R.Z.); (X.J.); (M.T.)
| | - Eric S. Miller
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695-7612, USA;
| | - Jonathan S. Lindsey
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (K.-U.N.); (Y.Z.); (Q.L.); (R.Z.); (X.J.); (M.T.)
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Lalisse RF, Hadad CM, Brückner C, Guberman-Pfeffer MJ. [3 + 2]-Cycloadditions with Porphyrin β,β'-Bonds: Theoretical Basis of the Counterintuitive meso-Aryl Group Influence on the Rates of Reaction. J Org Chem 2022; 87:16473-16482. [PMID: 36444511 DOI: 10.1021/acs.joc.2c02192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Removal of a β,β'-bond from meso-tetraarylporphyrin using [3 + 2]-cycloadditions generates meso-tetraarylhydroporphyrins. Literature evidence indicates that meso-tetraphenylporphyrins react more sluggishly with 1,3-dipoles such as ylides and OsO4 (in the presence of pyridine) than meso-tetrakis(pentafluorophenyl)porphyrin. The trend is counterintuitive for the reaction with OsO4, as this formal oxidation reaction is expected to proceed more readily with more electron-rich substrates. This work presents a density functional theory-based computational study of the frontier molecular orbital (FMO) interactions and reaction profile thermodynamics involved in the reaction of archetypical cycloaddition reactions (a simple ylide, OsO4, OsO4·py, OsO4·(py)2, and ozone) with the β,β'-double bonds of variously fluorinated meso-arylporphyrins. The trend observed for the Type I cycloaddition of an ylide is straightforward, as lowering the LUMO of the porphyrin with increasing meso-phenyl-fluorination also lowers the reaction barrier. The corresponding simple FMO analyses of Type III cycloadditions do not correctly model the reaction energetics. This is because increasing fluorination leads to lowering of the porphyrin HOMO-2, thus increasing the reaction barrier. However, coordination of pyridine to OsO4 preorganizes the transition state complex; lowering of the energy barrier by the preorganization exceeds the increase in repulsive orbital interactions, overall accelerating the cycloaddition and rationalizing the counterintuitive experimental findings.
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Affiliation(s)
- Remy F Lalisse
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W. 18th Avenue, Columbus, Ohio 43210, United States
| | - Christopher M Hadad
- Department of Chemistry and Biochemistry, The Ohio State University, 100 W. 18th Avenue, Columbus, Ohio 43210, United States
| | - Christian Brückner
- Department of Chemistry, University of Connecticut, Unit 3060, Storrs, Connecticut 06269-3060, United States
| | - Matthew J Guberman-Pfeffer
- Department of Molecular Biophysics and Biochemistry, Yale University, 333 Cedar St., New Haven, Connecticut 06510, United States.,Microbial Sciences Institute, Yale University, 840 West Campus Drive, West Haven, Connecticut 06516, United States
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Sun Q, Li X, Guo Y, Qiu Y, Luo X, Liu G, Han Y. Coumarin-based turn-on fluorescence probe with a large Stokes shift for detection of endogenous neutrophil elastase in live cells and zebrafish. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 281:121563. [PMID: 35810672 DOI: 10.1016/j.saa.2022.121563] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 06/21/2022] [Accepted: 06/23/2022] [Indexed: 06/15/2023]
Abstract
Neutrophil elastase (NE), a serine proteinase, is a significant biomarker which is closely related to the progress of diseases. However, only few probes have been reported for detection of NE activity and cell imaging. And these probes have exhibited small Stokes shift, which leads to high fluorescence interferences. Furthermore, only one probe among them is able to image NE in vivo successfully. To overcome the above problems, we designed a novel coumarin-based fluorescent probe HNCOU-NE with large Stokes shift to visualize NE activity in living cells and zebrafish. The new probe HNCOU-NE for NE contains fluorophore HNCOU as the reporter and pentafluoroethyl as the enzyme-active trigger moiety. As expected, HNCOU-NE displays perfect detecting performance for sensing of NE, including good water solubility, large Stokes shift, high affinity and wide linear response concentration. In addition, HNCOU-NE has been successfully utilized for NE real-time detection and imaging in different living cells, exhibiting low cytotoxicity and excellent biocompatibility. Most importantly, endogenous NE fluorescence imaging experiments reveals that HNCOU-NE can distinguish liver cancer cells (HepG2) and other cells (293T, HeLa and SKOV3), illustrating its specific ability to diagnose liver cancer cells. Besides, probe HNCOU-NE also has the ability to specifically detect endogenous NE activity in living zebrafish. All the results indicate that HNCOU-NE is a valuable probe for qualitative and quantitative sensing of NE activity in vitro and in vivo.
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Affiliation(s)
- Qi Sun
- Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemistry Technology, Key Laboratory of Novel Biomass-based Environmental and Energy Materials in Petroleum and Chemical Industry and School of Chemistry and Environmental Engineering, Wuhan Institute of Technology, Wuhan, China
| | - Xiang Li
- Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemistry Technology, Key Laboratory of Novel Biomass-based Environmental and Energy Materials in Petroleum and Chemical Industry and School of Chemistry and Environmental Engineering, Wuhan Institute of Technology, Wuhan, China
| | - Yun Guo
- Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemistry Technology, Key Laboratory of Novel Biomass-based Environmental and Energy Materials in Petroleum and Chemical Industry and School of Chemistry and Environmental Engineering, Wuhan Institute of Technology, Wuhan, China
| | - Yuan Qiu
- Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemistry Technology, Key Laboratory of Novel Biomass-based Environmental and Energy Materials in Petroleum and Chemical Industry and School of Chemistry and Environmental Engineering, Wuhan Institute of Technology, Wuhan, China
| | - Xiaogang Luo
- Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemistry Technology, Key Laboratory of Novel Biomass-based Environmental and Energy Materials in Petroleum and Chemical Industry and School of Chemistry and Environmental Engineering, Wuhan Institute of Technology, Wuhan, China; School of Materials Science and Engineering, Zhengzhou University, Zhengzhou, China
| | - Genyan Liu
- Key Laboratory for Green Chemical Process of Ministry of Education, Hubei Key Laboratory of Novel Reactor and Green Chemistry Technology, Key Laboratory of Novel Biomass-based Environmental and Energy Materials in Petroleum and Chemical Industry and School of Chemistry and Environmental Engineering, Wuhan Institute of Technology, Wuhan, China.
| | - Yunfeng Han
- Department of Nuclear Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
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Chaudhri N, Guberman-Pfeffer MJ, Zeller M, Brückner C. Stepwise Reduction of β-Trioxopyrrocorphins: Collapse of the Oxo-Induced Macrocycle Aromaticity. J Org Chem 2022; 87:7179-7192. [PMID: 35605247 DOI: 10.1021/acs.joc.2c00399] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The diatropic ring current that characterizes the unexpectedly aromatic octaethyltrioxopyrrocorphins gets drastically reduced upon chemical reduction of one and particularly two ketone moieties. With increasing reduction, the chromophores containing one pyrrole, one/two pyrrolinone, and one/two pyrrolines become more similar to regular, nonmacrocycle-aromatic pyrrocorphins (hexahydroporphyrins). Single-crystal diffraction analysis shows the reduction products to be idealized planar. With increasing reduction, their UV-vis spectroscopic signatures are those of conjugated but nonaromatic oligopyrroles. Their diatropic ring currents, as assessed by 1H NMR spectroscopy, showed them to possess largely nonaromatic π-systems. Dihydroxylation of select β,β'-dioxobacteriochlorin and β,β'-dioxoisobacteriochlorins also resulted in the formation of equivalent mixed pyrrole/two pyrrolinone/pyrroline chromophores. Computations were able to reproduce the experimental trends of the diatropic ring currents and filled in the data for the regioisomers that could not be experimentally accessed. The work further highlights the electronic influence of the β-oxo-substituents and, more specifically, the origin of the aromaticity of the trioxopyrrocorphins. It also presents a series of chemically robust pyrrocorphins, a chromophore class for which many chemically very sensitive members have been reported.
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Affiliation(s)
- Nivedita Chaudhri
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269, United States
| | | | - Matthias Zeller
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Christian Brückner
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269, United States
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Jing H, Wang P, Chen B, Jiang J, Vairaprakash P, Liu S, Rong J, Chen CY, Nalaoh P, Lindsey JS. Synthesis of bacteriochlorins bearing diverse β-substituents. NEW J CHEM 2022. [DOI: 10.1039/d1nj05852e] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Eleven bacteriochlorins have been prepared for surface attachment, bioconjugation, water-solubilization, vibrational studies, and elaboration into multichromophore arrays.
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Affiliation(s)
- Haoyu Jing
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, USA
| | - Pengzhi Wang
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, USA
| | - Boyang Chen
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, USA
| | - Jianbing Jiang
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, USA
| | - Pothiappan Vairaprakash
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, USA
| | - Sijia Liu
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, USA
| | - Jie Rong
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, USA
| | - Chih-Yuan Chen
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, USA
| | - Phattananawee Nalaoh
- Department of Materials Science and Engineering, School of Molecular Science and Engineering, Vidyasirimedhi Institute of Science and Technology, Wangchan, Rayong, 21210, Thailand
| | - Jonathan S. Lindsey
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, USA
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Jin X, Zhang Y, Zhang R, Nguyen KU, Lindsey JS, Miller ES. Identification of Putative Biosynthetic Gene Clusters for Tolyporphins in Multiple Filamentous Cyanobacteria. Life (Basel) 2021; 11:758. [PMID: 34440502 PMCID: PMC8401325 DOI: 10.3390/life11080758] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2021] [Revised: 07/21/2021] [Accepted: 07/26/2021] [Indexed: 01/23/2023] Open
Abstract
Tolyporphins A-R are unusual tetrapyrrole macrocycles produced by the non-axenic filamentous cyanobacterium HT-58-2. A putative biosynthetic gene cluster for biosynthesis of tolyporphins (here termed BGC-1) was previously identified in the genome of HT-58-2. Here, homology searching of BGC-1 in HT-58-2 led to identification of similar BGCs in seven other filamentous cyanobacteria, including strains Nostoc sp. 106C, Nostoc sp. RF31YmG, Nostoc sp. FACHB-892, Brasilonema octagenarum UFV-OR1, Brasilonema octagenarum UFV-E1, Brasilonema sennae CENA114 and Oculatella sp. LEGE 06141, suggesting their potential for tolyporphins production. A similar gene cluster (BGC-2) also was identified unexpectedly in HT-58-2. Tolyporphins BGCs were not identified in unicellular cyanobacteria. Phylogenetic analysis based on 16S rRNA and a common component of the BGCs, TolD, points to a close evolutionary history between each strain and their respective tolyporphins BGC. Though identified with putative tolyporphins BGCs, examination of pigments extracted from three cyanobacteria has not revealed the presence of tolyporphins. Overall, the identification of BGCs and potential producers of tolyporphins presents a collection of candidate cyanobacteria for genetic and biochemical analysis pertaining to these unusual tetrapyrrole macrocycles.
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Affiliation(s)
- Xiaohe Jin
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (X.J.); (Y.Z.); (R.Z.); (K.-U.N.)
| | - Yunlong Zhang
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (X.J.); (Y.Z.); (R.Z.); (K.-U.N.)
| | - Ran Zhang
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (X.J.); (Y.Z.); (R.Z.); (K.-U.N.)
| | - Kathy-Uyen Nguyen
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (X.J.); (Y.Z.); (R.Z.); (K.-U.N.)
| | - Jonathan S. Lindsey
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, USA; (X.J.); (Y.Z.); (R.Z.); (K.-U.N.)
| | - Eric S. Miller
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695-7615, USA
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