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Simon J, Bosch M, Blanché C. CromoCat: Chromosome Database of the Vascular Flora of the Catalan Countries-25 years. Methods Mol Biol 2023; 2703:131-160. [PMID: 37646943 DOI: 10.1007/978-1-0716-3389-2_11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
CromoCat is a plant chromosome database that evolved from previous versions, as a repository of karyological information on the vascular flora of the Catalan Countries. CromoCat is designed as an independent database, managed by a team based at the University of Barcelona directed by J. Simon, available from its own webpage ( http://www.cromo.cat/ ) and from the Flora section of the Catalan Biodiversity Database - BDBC ( http://biodiver.bio.ub.es ). CromoCat contains at present (mid 2022) more than 68,000 records of karyological data belonging to more than 5000 taxa. A synthesis of the development of CromoCat, its functional system, achievements, limitations, and adopted solutions, during 25 years (1996-2021) and updated 2022, as well as the application to biodiversity conservation and management are outlined.
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Affiliation(s)
- Joan Simon
- BioC (GReB, IRBio) - Laboratori de Botànica, Facultat de Farmàcia i Ciències de l'Alimentació, Universitat de Barcelona, Barcelona, Catalonia, Spain.
| | - Maria Bosch
- BioC (GReB, IRBio) - Laboratori de Botànica, Facultat de Farmàcia i Ciències de l'Alimentació, Universitat de Barcelona, Barcelona, Catalonia, Spain
| | - Cèsar Blanché
- BioC (GReB, IRBio) - Laboratori de Botànica, Facultat de Farmàcia i Ciències de l'Alimentació, Universitat de Barcelona, Barcelona, Catalonia, Spain
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de Paula AF, Cruz FDPN, Dinato NB, de Andrade PHM, de Moraes ACP, Junior WB, Bernardi ACDC, Vigna BBZ, Fávero AP, Lacava PT. Endophytic and rhizospheric bacteria associated with Paspalum atratum and its potential for plant growth promotion with different phosphate sources. FRONTIERS IN PLANT SCIENCE 2022; 13:884716. [PMID: 35968102 PMCID: PMC9365944 DOI: 10.3389/fpls.2022.884716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/26/2022] [Accepted: 07/05/2022] [Indexed: 06/15/2023]
Abstract
The genus Paspalum belongs to the family Poaceae and has several species that are native to Brazil. The Paspalum Germplasm Bank (GB) of the Brazilian Agricultural Research Corporation comprises approximately 450 accessions from 50 species. Among these accessions, Paspalum atratum (BGP 308) has economic potential for forage purposes. However, the endophytic and rhizospheric microbial communities within this accession and their ability to promote plant growth remain unknown. The present study aimed to isolate the endophytic and rhizospheric bacteria associated with P. atratum and to assess their potential for plant growth improvement, so-called plant growth-promoting bacteria (PGPB). For the in vitro tests, the ability of nitrogen-fixing bacteria (NFB), phosphate solubilization (PS) and indoleacetic acid (IAA) production were evaluated. A total of 116 endophytic and rhizosphere bacteria were obtained from the isolation. In the in vitro tests, 43 (37.00%) of these isolates showed positive NFB, PS, and IAA results. These isolates were identified by 16S rDNA sequencing. The phosphate solubilization index (PSI) ranged from 2 to 3.61, all 43 strains performed biological nitrogen fixation and the IAA production ranged from 12.85 to 431.41 μg ml-1. Eight of these 43 isolates were evaluated in vivo in a greenhouse using P. atratum caryopsis. The pots were filled with soil prepared with three different phosphate sources and one control without phosphate. After growth, the plants were submitted to morphological, bromatological and chemical determination. Data were analyzed using analysis of variance (ANOVA) and principal component analysis (PCA). In the in vivo test, treatments 105 (Pseudomonas sp.) and 458 (Pseudomonas sp.) were the most significant for the crystalline phosphate source, 109 (Bacillus sp.) for the sedimentary phosphate source and, as for the soluble phosphate source most treatments that received bacterial isolates had higher phosphorus content in the dry matter than the uninoculated soluble phosphate control. The 105FCR (crystalline phosphate + Pseudomonas sp.), 109FSE (sedimentary phosphate + Bacillus sp.), and 110 FSE (sedimentary phosphate + Enterobacter sp.) treatments showed the best results for plant growth promotion. This work made it possible to determine the bacterial community associated with P. atratum (BGP308) and to obtain new potential plant growth-promoting strains.
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Affiliation(s)
- Ailton Ferreira de Paula
- Laboratory of Microbiology and Biomolecules, Department of Morphology and Pathology, Biological and Health Sciences Center, Federal University of São Carlos, São Carlos, Brazil
- Evolutionary Genetics and Molecular Biology Graduate Program, Biological and Health Sciences Center, Federal University of São Carlos, São Carlos, Brazil
| | - Felipe de Paula Nogueira Cruz
- Laboratory of Microbiology and Biomolecules, Department of Morphology and Pathology, Biological and Health Sciences Center, Federal University of São Carlos, São Carlos, Brazil
- Biotechnology Graduate Program, Exact and Technology Sciences Center, Federal University of São Carlos, São Carlos, Brazil
| | - Naiana Barbosa Dinato
- Evolutionary Genetics and Molecular Biology Graduate Program, Biological and Health Sciences Center, Federal University of São Carlos, São Carlos, Brazil
- Embrapa Pecuária Sudeste, São Carlos, Brazil
| | - Paulo Henrique Marques de Andrade
- Laboratory of Microbiology and Biomolecules, Department of Morphology and Pathology, Biological and Health Sciences Center, Federal University of São Carlos, São Carlos, Brazil
- Evolutionary Genetics and Molecular Biology Graduate Program, Biological and Health Sciences Center, Federal University of São Carlos, São Carlos, Brazil
| | - Amanda Carolina Prado de Moraes
- Laboratory of Microbiology and Biomolecules, Department of Morphology and Pathology, Biological and Health Sciences Center, Federal University of São Carlos, São Carlos, Brazil
- Biotechnology Graduate Program, Exact and Technology Sciences Center, Federal University of São Carlos, São Carlos, Brazil
| | | | | | | | - Alessandra Pereira Fávero
- Evolutionary Genetics and Molecular Biology Graduate Program, Biological and Health Sciences Center, Federal University of São Carlos, São Carlos, Brazil
- Embrapa Pecuária Sudeste, São Carlos, Brazil
| | - Paulo Teixeira Lacava
- Laboratory of Microbiology and Biomolecules, Department of Morphology and Pathology, Biological and Health Sciences Center, Federal University of São Carlos, São Carlos, Brazil
- Evolutionary Genetics and Molecular Biology Graduate Program, Biological and Health Sciences Center, Federal University of São Carlos, São Carlos, Brazil
- Biotechnology Graduate Program, Exact and Technology Sciences Center, Federal University of São Carlos, São Carlos, Brazil
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Aguilera PM, Galdeano F, Ortiz JPA, Quarin CL, Espinoza F. Construction of AFLP-based cosegregation groups of tetraploid Plicatula species and identification of markers linked to apomixis. RODRIGUÉSIA 2022. [DOI: 10.1590/2175-7860202273085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
Abstract Most species of Plicatula are important native forages. This work aimed to build framework cosegregation groups of the apomictic tetraploid race of Paspalum guenoarum cv. Rojas and localize the locus controlling apomixis in the species. An interspecific population derived from crossing a completely sexual tetraploid plant of P. plicatulum and an apomictic tetraploid individual of P. guenoarum cv. Rojas was used. Both, disomic and tetrasomic inheritance were detected in both parental genotypes. In P. guenoarum, ten cosegregation groups were built, including 50 markers expanding for 583 cM. The estimated genome coverage was 63.95%. The apomixis locus was located in the linkage group M8, together with seven other loci (four paternal and three biparental markers). The group extended for 59 cM. The four paternal markers showed strong linkage to apomixis, and two of them mapped at 4 and 7 cM at both sides of the locus. Five female linkage groups were constructed with markers segregating from P. plicatulum. One of them (F3) being homologous to the male group carrying apomixis. The linkage groups presented here constitute the first genetic frame for species of Plicatula group. Moreover, molecular markers linked to apomixis in P. guenoarum can assist fundamental research and breeding programs.
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