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1
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de Oliveira CKF, Nascimento E, da Silva Assis A, da Silva PCL, Fabreti-Oliveira RA. Identification of four novel HLA alleles: HLA-B*27:265, -B*35:569, -DRB1*08:117 and -DPB1*1435:01. HLA 2024; 103:e15445. [PMID: 38494874 DOI: 10.1111/tan.15445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 03/01/2024] [Accepted: 03/04/2024] [Indexed: 03/19/2024]
Abstract
Identification of four new HLA alleles (B*27:265, B*35:569, DRB1*08:117, and DPB1*1435:01) in Brazilian bone marrow donors.
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Affiliation(s)
| | - Evaldo Nascimento
- Molecular Biology, IMUNOLAB-Laboratory of Histocompatibility, Belo Horizonte, Brazil
- Institute of Education and Research, Faculty of Health of the Hospital Santa Casa, Belo Horizonte, Brazil
| | - Aline da Silva Assis
- Molecular Biology, IMUNOLAB-Laboratory of Histocompatibility, Belo Horizonte, Brazil
| | | | - Raquel Aparecida Fabreti-Oliveira
- Molecular Biology, IMUNOLAB-Laboratory of Histocompatibility, Belo Horizonte, Brazil
- Post-Graduate Program in Health Sciences, Faculty of Medical Sciences of Minas Gerais, Belo Horizonte, Brazil
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2
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Zhang W, Dong L, Chen N, He J, Zhu F. Identification of the novel HLA-DQB1*04:85 allele by next-generation sequencing. HLA 2022; 100:295-296. [PMID: 35538023 DOI: 10.1111/tan.14660] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Accepted: 05/06/2022] [Indexed: 11/26/2022]
Abstract
HLA-DQB1*04:85 differs from HLA-DQB1*04:02:01:01 by a single nucleotide substitution at position 629 C>G. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Wei Zhang
- HLA typing laboratory, Blood Center of Zhejiang Province, Hangzhou, Zhejiang Province, China.,Key Laboratory of Blood Safety Research, Zhejiang Province, Hangzhou, Zhejiang Province, China
| | - Lina Dong
- HLA typing laboratory, Blood Center of Zhejiang Province, Hangzhou, Zhejiang Province, China.,Key Laboratory of Blood Safety Research, Zhejiang Province, Hangzhou, Zhejiang Province, China
| | - Nanying Chen
- HLA typing laboratory, Blood Center of Zhejiang Province, Hangzhou, Zhejiang Province, China.,Key Laboratory of Blood Safety Research, Zhejiang Province, Hangzhou, Zhejiang Province, China
| | - Ji He
- HLA typing laboratory, Blood Center of Zhejiang Province, Hangzhou, Zhejiang Province, China.,Key Laboratory of Blood Safety Research, Zhejiang Province, Hangzhou, Zhejiang Province, China
| | - Faming Zhu
- HLA typing laboratory, Blood Center of Zhejiang Province, Hangzhou, Zhejiang Province, China.,Key Laboratory of Blood Safety Research, Zhejiang Province, Hangzhou, Zhejiang Province, China
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3
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Yang J, Liu H, Pan W, Song M, Lu Y, Wang-Ngai Chow F, Hang-Mei Leung P, Deng Y, Hori M, He N, Li S. Recent Advances of Human Leukocyte Antigen (HLA) Typing Technology Based on High-Throughput Sequencing. J Biomed Nanotechnol 2022; 18:617-639. [PMID: 35715925 DOI: 10.1166/jbn.2022.3280] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
The major histocompatibility complex (MHC) in humans is a genetic region consisting of cell surface proteins located on the short arm of chromosome 6. This is also known as the human leukocyte antigen (HLA) region. The HLA region consists of genes that exhibit complex genetic polymorphisms, and are extensively involved in immune responses. Each individual has a unique set of HLAs. Donor-recipient HLA allele matching is an important factor for organ transplantation. Therefore, an established rapid and accurate HLA typing technology is instrumental to preventing graft-verses-host disease (GVHD) in organ recipients. As of recent, high-throughput sequencing has allowed for an increase read length and higher accuracy and throughput, thus achieving complete and high-resolution full-length typing. With more advanced nanotechnology used in high-throughput sequencing, HLA typing is more widely used in third-generation single-molecule sequencing. This review article summarizes some of the most widely used sequencing typing platforms and evaluates the latest developments in HLA typing kits and their clinical applications.
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Affiliation(s)
- Jin Yang
- Hunan Key Laboratory of Biomedical Nanomaterials and Devices, Hunan University of Technology, Zhuzhou 412007, Hunan, China
| | - Hongna Liu
- Hunan Key Laboratory of Biomedical Nanomaterials and Devices, Hunan University of Technology, Zhuzhou 412007, Hunan, China
| | - Wenjing Pan
- Hunan Key Laboratory of Biomedical Nanomaterials and Devices, Hunan University of Technology, Zhuzhou 412007, Hunan, China
| | - Mengru Song
- Hunan Key Laboratory of Biomedical Nanomaterials and Devices, Hunan University of Technology, Zhuzhou 412007, Hunan, China
| | - Yutong Lu
- School of Electrical and Information Engineering, Hunan University, Changsha 410012, Hunan, China
| | - Franklin Wang-Ngai Chow
- Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong 999077, China
| | - Polly Hang-Mei Leung
- Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong 999077, China
| | - Yan Deng
- Hunan Key Laboratory of Biomedical Nanomaterials and Devices, Hunan University of Technology, Zhuzhou 412007, Hunan, China
| | - Masahi Hori
- 2-16-5 Edagawa, Koto-Ku, Tokyo, 135-0051, Japan
| | - Nongyue He
- Hunan Key Laboratory of Biomedical Nanomaterials and Devices, Hunan University of Technology, Zhuzhou 412007, Hunan, China
| | - Song Li
- Hunan Key Laboratory of Biomedical Nanomaterials and Devices, Hunan University of Technology, Zhuzhou 412007, Hunan, China
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4
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Fabreti-Oliveira RA, Oliveira CKF, Vale EMG, Nascimento E. The novel HLA-DRB1*03:178, -DRB1*03:179, and -DRB1*11:276 alleles identified in a healthy Brazilian individuals. HLA 2021; 99:61-62. [PMID: 34881521 DOI: 10.1111/tan.14507] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2021] [Revised: 12/03/2021] [Accepted: 12/06/2021] [Indexed: 01/22/2023]
Abstract
The novel HLA-DRB1*03:178, -DRB1*03:179, -DRB1*11:276 alleles were identified in healthy Brazilian individuals.
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Affiliation(s)
- Raquel A Fabreti-Oliveira
- Faculty of Medical Sciences, Belo Horizonte, Minas Gerais, Brazil.,IMUNOLAB - Laboratory of Histocompatibility, Belo Horizonte, Minas Gerais, Brazil
| | - Cíntia K F Oliveira
- IMUNOLAB - Laboratory of Histocompatibility, Belo Horizonte, Minas Gerais, Brazil
| | - Eliane M G Vale
- IMUNOLAB - Laboratory of Histocompatibility, Belo Horizonte, Minas Gerais, Brazil
| | - Evaldo Nascimento
- IMUNOLAB - Laboratory of Histocompatibility, Belo Horizonte, Minas Gerais, Brazil.,Institute of Education and Research, Santa Casa Hospital, Belo Horizonte, Minas Gerais, Brazil
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5
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Marques SBD, Guariento EG, Visentainer JEL, Nascimento E, Fabreti‐Oliveira RA. Two novel
HLA‐DRB1
alleles,
DRB1
*11:261
and
DRB1
*13:286
identified by sequencing in Brazilian individuals. HLA 2020; 96:744-745. [DOI: 10.1111/tan.14103] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2020] [Revised: 10/06/2020] [Accepted: 10/08/2020] [Indexed: 01/21/2023]
Affiliation(s)
- Silvia B. D. Marques
- Hemocentro of Campinas, Histocompatibility Laboratory University of Campinas ‐ Unicamp Campinas SP Brazil
| | - Edilaine G. Guariento
- Hemocentro of Campinas, Histocompatibility Laboratory University of Campinas ‐ Unicamp Campinas SP Brazil
| | - Jeane E. L. Visentainer
- Laboratory of Immunogenetics, Department of Basic Health Sciences State University of Maringá Paraná Brazil
| | - Evaldo Nascimento
- Faculty of Medical Sciences Belo Horizonte Minas Gerais Brazil
- IMUNOLAB Laboratory of Histocompatibility Belo Horizonte Minas Gerais Brazil
| | - Raquel A. Fabreti‐Oliveira
- Faculty of Medical Sciences Belo Horizonte Minas Gerais Brazil
- IMUNOLAB Laboratory of Histocompatibility Belo Horizonte Minas Gerais Brazil
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6
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Marsh SGE. Nomenclature for factors of the
HLA
system, update April, May, and June 2020. HLA 2020; 96:384-412. [DOI: 10.1111/tan.14000] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Steven G. E. Marsh
- Anthony Nolan Research InstituteRoyal Free Hospital London United Kingdom
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7
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Marsh SGE. Nomenclature for factors of the HLA system, update April, May and June 2020. Int J Immunogenet 2020; 47:456-483. [DOI: 10.1111/iji.12510] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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