An NGS ‐based HLA haplotype analysis and population comparison between two cities in Rio de Janeiro, Brazil

Characterisation of the Novel HLA-DRB1*16:79 Allele Using Short- and Long-Read Sequencing Technologies

The novel HLA-DRB1*16:79 allele, first described in an individual from Brazil.

Characterisation of the novel HLA-B*18:37:03 allele, first identified in a Brazilian individual

The novel HLA-B*18:37:03 allele, first described in a potential bone marrow donor from Brazil.

Characterisation of the novel HLA-DQB1*06:02:62 allele using short- and long-read sequencing technologies

The novel HLA-DQB1*06:02:62 allele, first described in an individual from Brazil.

Characterisation of the novel HLA-C*01:273 allele, first identified in a Brazilian individual

The novel HLA-C*01:273 allele, first described in a potential bone marrow donor from Brazil.

Characterisation of the novel HLA-A*33:01:21 allele, first identified in a Brazilian individual

The novel HLA-A*33:01:21 allele, first described in a potential bone marrow donor from Brazil.

Characterisation of the novel HLA-B*18:243 allele using short- and long-read sequencing technologies

The novel HLA-B*18:243 allele, first described in a potential bone marrow donor from Brazil.

Characterisation of the novel HLA-DRB1*03:215 allele using short- and long-read sequencing technologies

The novel HLA-DRB1*03:215 allele, first described in a potential bone marrow donor from Brazil.

Characterisation of the novel HLA-DQB1*03:01:61 allele, first identified in a Brazilian individual

The novel HLA-DQB1*03:01:61 allele, first described in a potential bone marrow donor from Brazil.

Characterisation of the novel HLA-C*08:275 allele, first identified in a Brazilian individual

The novel HLA-C*08:275 allele, first described in a potential bone marrow donor from Brazil.

Characterisation of the novel HLA-C*15:274 allele using short and long-read sequencing technologies

The novel HLA-C*15:274 allele, first described in a potential bone marrow donor from Brazil.

Characterisation of the novel HLA-B*35:593 allele using short and long-read sequencing technologies

The novel HLA-B*35:593 allele, first described in a potential bone marrow donor from Brazil.

Characterisation of the novel HLA-A*30:218 allele using two different sequencing technologies

The novel HLA-A*30:218 allele, first described in a potential bone marrow donor from Brazil.

Characterisation of the novel HLA-A*02:1140 allele, first identified in a Brazilian individual

The novel HLA-A*02:1140 allele, first described in a potential bone marrow donor from Brazil.

The novel HLA-A allele, HLA-A*02:01:202, first described in a Brazilian individual

The novel HLA-A*02:01:202 allele, first described in a potential bone marrow donor from Brazil.

The novel HLA-A allele, HLA-A*33:221, first described in a Brazilian individual

The novel HLA-A*33:221 allele, first described in a potential bone marrow donor from Brazil.

The novel HLA-A allele, HLA-A*29:158, first described in two Brazilian individuals

The novel HLA-A*29:158 allele, first described in potential bone marrow donors from Brazil.

The novel HLA-A allele, HLA-A*68:272, first described in a Brazilian individual

The novel HLA-A*68:272 allele, first described in a potential bone marrow donor from Brazil.

The novel HLA-DPB1 allele, HLA-DPB1*04:01:51, first described in a Brazilian individual

The novel HLA-DPB1*04:01:51 allele first described in a potential bone marrow donor from Brazil.

The novel HLA-DPA1 allele, HLA-DPA1*04:03, first described in a Brazilian individual

The novel HLA-DPA1*04:03 allele, first described in a potential bone marrow donor from Brazil.

Three novel HLA-DQB1 alleles identified in Brazilian individuals by next-generation sequencing

Characterization of three novel HLA-DQB1 alleles: HLA-DQB1*04:02:01:11, -DQB1*05:01:01:13, and -DQB1*06:03:01:04.

The novel HLA-A allele, HLA-A*02:952, first described in a Brazilian individual

The novel HLA-A*02:952 allele, first described in a potential bone marrow donor from Brazil.

The novel HLA-A allele, HLA-A*24:516, first described in two unrelated Brazilian individuals

The novel HLA-A*24:516 allele, first described in two unrelated potential bone marrow donors from Brazil.

NGS-based typings for 7 HLA loci in three populations from Rio de Janeiro, RJ, Brazil

We investigated HLA class I (HLA-A, -B, and -C) and class II (HLA-DRB1, -DQB1, -DPA1, and -DPB1) alleles by NGS-based typing among 759 Brazilian individuals from three populations in the Rio de Janeiro city based on their self-declared skin color (Caucasian, N = 521, AFND-ID: 3730; Parda, N = 170, AFND-ID: 3728; Black, N = 68, AFND-ID: 3727) to calculate allelic and haplotypic frequencies, plus linkage disequilibrium. Only HLA-DRB1 locus deviated from Hardy-Weinberg equilibrium (in Caucasian and Black populations). The three populations shared the most frequent allele on HLA-A, -C, -DRB1, -DPA1, and -DPB1. Genotype and frequency data are available in the Allele Frequencies Net Database.

NGS-based typings for 7 HLA loci in two populations from Barra Mansa, RJ, Brazil

We investigated HLA class I (HLA-A, -B, and -C) and class II (HLA-DRB1, -DQB1, -DPA1, and -DPB1) alleles by NGS-based typing among 478 Brazilian individuals from two populations in the Barra Mansa city based on their self-declared skin color (Caucasian, N = 405, AFND-ID: 3729; Black, N = 73, AFND-ID: 3731) to calculate allelic and haplotypic frequencies, plus linkage disequilibrium. No locus deviated from Hardy-Weinberg equilibrium. Both populations shared the most frequent allele on HLA-A, -C, -DPA1, and -DPB1. Genotype and frequency data are available in the Allele Frequencies Net Database.