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Wei S, Liu Y, Bian Z, Wang Y, Zuo L, Calabresi PA, Saidha S, Prince JL, Carass A. Recurrent Self Fusion: Iterative Denoising for Consistent Retinal OCT Segmentation. OPHTHALMIC MEDICAL IMAGE ANALYSIS : 10TH INTERNATIONAL WORKSHOP, OMIA 2023, HELD IN CONJUNCTION WITH MICCAI 2023, VANCOUVER, BC, CANADA, OCTOBER 12, 2023, PROCEEDINGS. OMIA (WORKSHOP) (10TH : 2023 : VANCOUVER, B.C. ; ONLINE) 2023; 14096:42-51. [PMID: 38318463 PMCID: PMC10840975 DOI: 10.1007/978-3-031-44013-7_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2024]
Abstract
Optical coherence tomography (OCT) is a valuable imaging technique in ophthalmology, providing high-resolution, cross-sectional images of the retina for early detection and monitoring of various retinal and neurological diseases. However, discrepancies in retinal layer thickness measurements among different OCT devices pose challenges for data comparison and interpretation, particularly in longitudinal analyses. This work introduces the idea of a recurrent self fusion (RSF) algorithm to address this issue. Our RSF algorithm, built upon the self fusion methodology, iteratively denoises retinal OCT images. A deep learning-based retinal OCT segmentation algorithm is employed for downstream analyses. A large dataset of paired OCT scans acquired on both a Spectralis and Cirrus OCT device are used for validation. The results demonstrate that the RSF algorithm effectively reduces speckle contrast and enhances the consistency of retinal OCT segmentation.
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Affiliation(s)
- Shuwen Wei
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Yihao Liu
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Zhangxing Bian
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Yuli Wang
- Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA
| | - Lianrui Zuo
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
- Laboratory of Behavioral Neuroscience, National Institute on Aging, National Institutes of Health, Baltimore, MD 21224, USA
| | - Peter A Calabresi
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA
| | - Shiv Saidha
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA
| | - Jerry L Prince
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Aaron Carass
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
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He Y, Carass A, Solomon SD, Saidha S, Calabresi PA, Prince JL. Retinal layer parcellation of optical coherence tomography images: Data resource for multiple sclerosis and healthy controls. Data Brief 2019; 22:601-604. [PMID: 30671506 PMCID: PMC6327073 DOI: 10.1016/j.dib.2018.12.073] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2018] [Revised: 12/14/2018] [Accepted: 12/20/2018] [Indexed: 11/20/2022] Open
Abstract
This paper presents optical coherence tomography (OCT) images of the human retina and manual delineations of eight retinal layers. The data includes 35 human retina scans acquired on a Spectralis OCT system (Heidelberg Engineering, Heidelberg, Germany), 14 of which are healthy controls (HC) and 21 have a diagnosis of multiple sclerosis (MS). The provided data includes manually delineation of eight retina layers, which were independently reviewed and edited. The data presented in this article was used to validate automatic segmentation algorithms (Lang et al., 2013).
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Affiliation(s)
- Yufan He
- Dept. of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA
| | - Aaron Carass
- Dept. of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA
| | - Sharon D. Solomon
- Wilmer Eye Institute, The Johns Hopkins School of Medicine, Baltimore, MD 21287, USA
| | - Shiv Saidha
- Dept. of Neurology, The Johns Hopkins School of Medicine, Baltimore, MD 21287, USA
| | - Peter A. Calabresi
- Dept. of Neurology, The Johns Hopkins School of Medicine, Baltimore, MD 21287, USA
| | - Jerry L. Prince
- Dept. of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA
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