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Ottakath N, Al-Maadeed S, Zughaier SM, Elharrouss O, Mohammed HH, Chowdhury MEH, Bouridane A. Ultrasound-Based Image Analysis for Predicting Carotid Artery Stenosis Risk: A Comprehensive Review of the Problem, Techniques, Datasets, and Future Directions. Diagnostics (Basel) 2023; 13:2614. [PMID: 37568976 PMCID: PMC10417708 DOI: 10.3390/diagnostics13152614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 07/25/2023] [Accepted: 07/25/2023] [Indexed: 08/13/2023] Open
Abstract
The carotid artery is a major blood vessel that supplies blood to the brain. Plaque buildup in the arteries can lead to cardiovascular diseases such as atherosclerosis, stroke, ruptured arteries, and even death. Both invasive and non-invasive methods are used to detect plaque buildup in the arteries, with ultrasound imaging being the first line of diagnosis. This paper presents a comprehensive review of the existing literature on ultrasound image analysis methods for detecting and characterizing plaque buildup in the carotid artery. The review includes an in-depth analysis of datasets; image segmentation techniques for the carotid artery plaque area, lumen area, and intima-media thickness (IMT); and plaque measurement, characterization, classification, and stenosis grading using deep learning and machine learning. Additionally, the paper provides an overview of the performance of these methods, including challenges in analysis, and future directions for research.
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Affiliation(s)
- Najmath Ottakath
- Department of Computer Science and Engineering, Qatar University, Doha 2713, Qatar; (S.A.-M.); (O.E.); (H.H.M.)
| | - Somaya Al-Maadeed
- Department of Computer Science and Engineering, Qatar University, Doha 2713, Qatar; (S.A.-M.); (O.E.); (H.H.M.)
| | | | - Omar Elharrouss
- Department of Computer Science and Engineering, Qatar University, Doha 2713, Qatar; (S.A.-M.); (O.E.); (H.H.M.)
| | - Hanadi Hassen Mohammed
- Department of Computer Science and Engineering, Qatar University, Doha 2713, Qatar; (S.A.-M.); (O.E.); (H.H.M.)
| | | | - Ahmed Bouridane
- Centre for Data Analytics and Cybersecurity, University of Sharjah, Sharjah 27272, United Arab Emirates;
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Rasool DA, Ismail HJ, Yaba SP. Fully automatic carotid arterial stiffness assessment from ultrasound videos based on machine learning. Phys Eng Sci Med 2023; 46:151-164. [PMID: 36787022 DOI: 10.1007/s13246-022-01206-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Accepted: 12/01/2022] [Indexed: 02/15/2023]
Abstract
Arterial stiffness (AS) refers to the loss of arterial compliance and alterations in vessel wall properties. The study of local carotid stiffness (CS) is particularly important since carotid artery stiffening raises the risk of stroke, cognitive impairment, and dementia. So, stiffness measurement as a screening tool approach is crucial because it can reduce mortality and facilitate therapy planning. This study aims to evaluate the stiffness of the CCA using machine learning (ML) through the features of diameter change (ΔD) and stiffness parameters. This study was conducted in seven stages: data collection, preprocessing, CCA segmentation, CCA lumen diameter (DCCA) computing during cardiac cycles, denoising signals of DCCA, computational of AS parameters, and stiffness assessment using ML. The 51 videos (with 25 s) of CCA B-mode ultrasound (US) were used and analyzed. Each US video yielded approximately 750 sequential frames spanning about 24 cardiac cycles. Firstly, US preset settings with time gain compensation with a U-pattern were employed to enhance CCA segmentations. The study showed that auto region-growing, employed three times, is appropriate for segmenting walls with a short running time (4.56 s/frame). The diameter computed for frames constructs a signal (diameter signal) with noisy parts in the shape of peak variance and an un-smooth side. Among the 12 employed smoothing methods, spline fitting with a mean peak difference per cycle (MPDCY) of 0.58 pixels was the most effective for the diameter signal. The authors propose the MPDCY as a new selection criterion for smoothing methods with highly preserved peaks. The ΔD (Dsys-Ddia) determined in this study was validated by statistical analysis as a viable replacement for manual ΔD measurement. Statistical analysis was carried out by Mann-Whitney t-test with a p-value of 0.81, regression line R2 = 0.907, and there was no difference in means between the two groups for box plots. The stiffness parameters of the carotid arteries were calculated based on auto-ΔD and pulse pressure. Five ML models, including K-nearest neighbor (KNN), support vector machine (SVM), decision tree (DT), logistic regression (LR), and random forest (RF), fed by distension (ΔD) and five stiffness parameters, were used to distinguish between the stiffened and un-stiffened CCA. Except for SVM, all models performed excellently in terms of specificity, sensitivity, precision, and area under the curve (AUC). In addition, the scatterplot and statistical analysis of the fed features confirm these remarkable outcomes. The scatter plot demonstrates that a linear hyperline can easily distinguish between the two classes. The statistical analysis shows that the stiffness parameters computed from the database of this work were statistically (p < 0.05) distributed into the non-stiffness and stiffness groups. The presented models are validated by applying them to additional datasets. Applying models to other datasets reveals a model performance of 100%. The proposed ML models could be applied in clinical practice to detect CS early, which is essential for preventing stroke.
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Yuan Y, Li C, Xu L, Zhu S, Hua Y, Zhang J. CSM-Net: Automatic joint segmentation of intima-media complex and lumen in carotid artery ultrasound images. Comput Biol Med 2022; 150:106119. [PMID: 37859275 DOI: 10.1016/j.compbiomed.2022.106119] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 08/25/2022] [Accepted: 09/17/2022] [Indexed: 11/18/2022]
Abstract
The intima-media thickness (IMT) is an effective biomarker for atherosclerosis, which is commonly measured by ultrasound technique. However, the intima-media complex (IMC) segmentation for the IMT is challenging due to confused IMC boundaries and various noises. In this paper, we propose a flexible method CSM-Net for the joint segmentation of IMC and Lumen in carotid ultrasound images. Firstly, the cascaded dilated convolutions combined with the squeeze-excitation module are introduced for exploiting more contextual features on the highest-level layer of the encoder. Furthermore, a triple spatial attention module is utilized for emphasizing serviceable features on each decoder layer. Besides, a multi-scale weighted hybrid loss function is employed to resolve the class-imbalance issues. The experiments are conducted on a private dataset of 100 images for IMC and Lumen segmentation, as well as on two public datasets of 1600 images for IMC segmentation. For the private dataset, our method obtain the IMC Dice, Lumen Dice, Precision, Recall, and F1 score of 0.814 ± 0.061, 0.941 ± 0.024, 0.911 ± 0.044, 0.916 ± 0.039, and 0.913 ± 0.027, respectively. For the public datasets, we obtain the IMC Dice, Precision, Recall, and F1 score of 0.885 ± 0.067, 0.885 ± 0.070, 0.894 ± 0.089, and 0.885 ± 0.067, respectively. The results demonstrate that the proposed method precedes some cutting-edge methods, and the ablation experiments show the validity of each module. The proposed method may be useful for the IMC segmentation of carotid ultrasound images in the clinic. Our code is publicly available at https://github.com/yuanyc798/US-IMC-code.
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Affiliation(s)
- Yanchao Yuan
- School of Biological Science and Medical Engineering, Beihang University, Beijing, China; Hefei Innovation Research Institute, Beihang University, Hefei, China; Beijing Advanced Innovation Centre for Biomedical Engineering, Beihang University, Beijing, China
| | - Cancheng Li
- School of Biological Science and Medical Engineering, Beihang University, Beijing, China; Hefei Innovation Research Institute, Beihang University, Hefei, China; Beijing Advanced Innovation Centre for Biomedical Engineering, Beihang University, Beijing, China
| | - Lu Xu
- School of Biological Science and Medical Engineering, Beihang University, Beijing, China; Hefei Innovation Research Institute, Beihang University, Hefei, China; Beijing Advanced Innovation Centre for Biomedical Engineering, Beihang University, Beijing, China
| | - Shangming Zhu
- School of Biological Science and Medical Engineering, Beihang University, Beijing, China; Beijing Advanced Innovation Centre for Biomedical Engineering, Beihang University, Beijing, China
| | - Yang Hua
- Department of Vascular Ultrasonography, XuanWu Hospital, Capital Medical University, Beijing, China; Beijing Diagnostic Center of Vascular Ultrasound, Beijing, China; Center of Vascular Ultrasonography, Beijing Institute of Brain Disorders, Collaborative Innovation Center for Brain Disorders, Capital Medical University, Beijing, China.
| | - Jicong Zhang
- School of Biological Science and Medical Engineering, Beihang University, Beijing, China; Hefei Innovation Research Institute, Beihang University, Hefei, China; Beijing Advanced Innovation Centre for Biomedical Engineering, Beihang University, Beijing, China.
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van Knippenberg L, van Sloun RJG, Mischi M, de Ruijter J, Lopata R, Bouwman RA. Unsupervised domain adaptation method for segmenting cross-sectional CCA images. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2022; 225:107037. [PMID: 35907375 DOI: 10.1016/j.cmpb.2022.107037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 07/20/2022] [Accepted: 07/21/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND AND OBJECTIVES Automatic vessel segmentation in ultrasound is challenging due to the quality of the ultrasound images, which is affected by attenuation, high level of speckle noise and acoustic shadowing. Recently, deep convolutional neural networks are increasing in popularity due to their great performance on image segmentation problems, including vessel segmentation. Traditionally, large labeled datasets are required to train a network that achieves high performance, and is able to generalize well to different orientations, transducers and ultrasound scanners. However, these large datasets are rare, given that it is challenging and time-consuming to acquire and manually annotate in-vivo data. METHODS In this work, we present a model-based, unsupervised domain adaptation method that consists of two stages. In the first stage, the network is trained on simulated ultrasound images, which have an accurate ground truth. In the second stage, the network continues training on in-vivo data in an unsupervised way, therefore not requiring the data to be labelled. Rather than using an adversarial neural network, prior knowledge on the elliptical shape of the segmentation mask is used to detect unexpected outputs. RESULTS The segmentation performance was quantified using manually segmented images as ground truth. Due to the proposed domain adaptation method, the median Dice similarity coefficient increased from 0 to 0.951, outperforming a domain adversarial neural network (median Dice 0.922) and a state-of-the-art Star-Kalman algorithm that was specifically designed for this dataset (median Dice 0.942). CONCLUSIONS The results show that it is feasible to first train a neural network on simulated data, and then apply model-based domain adaptation to further improve segmentation performance by training on unlabeled in-vivo data. This overcomes the limitation of conventional deep learning approaches to require large amounts of manually labeled in-vivo data. Since the proposed domain adaptation method only requires prior knowledge on the shape of the segmentation mask, performance can be explored in various domains and applications in future research.
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Affiliation(s)
- Luuk van Knippenberg
- Department of Electrical Engineering, Eindhoven University of Technology, the Netherlands.
| | - Ruud J G van Sloun
- Department of Electrical Engineering, Eindhoven University of Technology, the Netherlands; Department of Anesthesiology, Catharina Hospital Eindhoven, the Netherlands
| | - Massimo Mischi
- Department of Electrical Engineering, Eindhoven University of Technology, the Netherlands; Department of Anesthesiology, Catharina Hospital Eindhoven, the Netherlands
| | - Joerik de Ruijter
- Department of Biomedical Engineering, Eindhoven University of Technology, the Netherlands
| | - Richard Lopata
- Department of Biomedical Engineering, Eindhoven University of Technology, the Netherlands; Department of Anesthesiology, Catharina Hospital Eindhoven, the Netherlands
| | - R Arthur Bouwman
- Department of Anesthesiology, Catharina Hospital Eindhoven, the Netherlands
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Stratification of risk of atherosclerotic plaque using Hu’s moment invariants of segmented ultrasonic images. BIOMED ENG-BIOMED TE 2022; 67:391-402. [DOI: 10.1515/bmt-2021-0044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 06/21/2022] [Indexed: 11/15/2022]
Abstract
Abstract
Myocardial infarction is one of the major life-threatening diseases. The cause is atherosclerosis i.e. the occlusion of the coronary artery by deposition of plaque on its walls. The severity of plaque deposition in the artery depends on the characteristics of the plaque. Hence, the classification of the type of plaque is crucial for assessing the risk of atherosclerosis and predicting the chances of myocardial infarction. This paper proposes prediction of atherosclerotic risk by non-invasive ultrasound image segmentation and textural feature extraction. The intima-media complex is segmented using a snakes-based segmentation algorithm on the arterial wall in the ultrasound images. Then, the plaque is extracted from the segmented intima-media complex. The features of the plaque are obtained by computing Hu’s moment invariants. Visual pattern recognition independent of position, size, orientation and parallel projection could be done using these moment invariants. For the classification of the features of the plaque, an SVM classifier is used. The performance shows improvement in accuracy using lesser number of features than previous works. The reduction in feature size is achieved by incorporating segmentation in the pre-processing stage. Tenfold cross-validation protocol is used for training and testing the classifier. An accuracy of 97.9% is obtained with only two features. This proposed technique could work as an adjunct tool in quick decision-making for cardiologists and radiologists. The segmentation step introduced in the preprocessing stage improved the feature extraction technique. An improvement in performance is achieved with much less number of features.
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Smitha B, Yadav D, Joseph PK. Evaluation of carotid intima media thickness measurement from ultrasound images. Med Biol Eng Comput 2022; 60:407-419. [PMID: 34988763 DOI: 10.1007/s11517-021-02496-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Accepted: 12/18/2021] [Indexed: 11/29/2022]
Abstract
A third of deaths in the world are due to cardiovascular diseases [1]. Atherosclerosis is the major cause of myocardial infarction, which occurs by deposition of plaque in the coronary artery. The chance of stroke rises with the thickening of carotid artery due to the plaque. Hence, accurate measurement of the intima-media thickness is necessary for predicting the chance of stroke. The stopping criterion and active resampling are incorporated in greedy snake segmentation technique. This modified algorithm segmented and extracted the intima-media complex in the ultrasound images. The snake control points obtained from the boundary of the region of interest forms the contour and demarcates the boundary of intima-media complex. The thickness ± standard deviation and the intra-observer error values obtained by modified algorithm are in conformity with the measurements by expert. The intra-observer error values for greedy snake segmentation methods were 0.10 and 0.09 for manual snake initialization and automatic snake initialization, respectively. Shapiro-Wilk test and One-way ANOVA test explains there is no statistical difference between group means obtained from these segmentation techniques and the expert measurement. The statistical analysis proves values of the intima-media thickness obtained from both snake segmentation techniques are very close to expert measurements.
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Affiliation(s)
- B Smitha
- Department of Electrical and Electronics Engineering, NSS College of Engineering, Palakkad, Kerala, 678008, India.
| | - Dhanraj Yadav
- Electrical Engineering Department, National Institute of Technology, Calicut, Kerala, 673601, India
| | - Paul K Joseph
- Electrical Engineering Department, National Institute of Technology, Calicut, Kerala, 673601, India
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de Ruijter J, van Sambeek M, van de Vosse F, Lopata R. Automated 3D geometry segmentation of the healthy and diseased carotid artery in free-hand, probe tracked ultrasound images. Med Phys 2020; 47:1034-1047. [PMID: 31837022 PMCID: PMC7079173 DOI: 10.1002/mp.13960] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Revised: 10/25/2019] [Accepted: 12/05/2019] [Indexed: 01/21/2023] Open
Abstract
PURPOSE Rupture of an arterosclerotic plaque in the carotid artery is a major cause of stroke. Biomechanical analysis of plaques is under development aiming to aid the clinician in the assessment of plaque vulnerability. Patient-specific three-dimensional (3D) geometry assessment of the carotid artery, including the bifurcation, is required as input for these biomechanical models. This requires a high-resolution, 3D, noninvasive imaging modality such as ultrasound (US). In this study, a high-resolution two-dimensional (2D) linear array in combination with a magnetic probe tracking device and automatic segmentation method was used to assess the geometry of the carotid artery. The advantages of using this system over a 3D ultrasound probe are its higher resolution (spatial and temporal) and its larger field of view. METHODS A slow sweep (v = ± 5 mm/s) was made over the subject's neck so that the full geometry of the bifurcated geometry of the carotid artery is captured. An automated segmentation pipeline was developed. First, the Star-Kalman method was used to approximate the center and size of the vessels for every frame. Images were filtered with a Gaussian high-pass filter before conversion into the 2D monogenic signals, and multiscale asymmetry features were extracted from these data, enhancing low lateral wall-lumen contrast. These images, in combination with the initial ellipse contours, were used for an active deformable contour model to segment the vessel lumen. To segment the lumen-plaque boundary, Otsu's automatic thresholding method was used. Distension of the wall due to the change in blood pressure was removed using a filter approach. Finally, the contours were converted into a 3D hexahedral mesh for a patient-specific solid mechanics model of the complete arterial wall. RESULTS The method was tested on 19 healthy volunteers and on 3 patients. The results were compared to manual segmentation performed by three experienced observers. Results showed an average Hausdorff distance of 0.86 mm and an average similarity index of 0.91 for the common carotid artery (CCA) and 0.88 for the internal and external carotid artery. For the total algorithm, the success rate was 89%, in 4 out of 38 datasets the ICA and ECA were not sufficient visible in the US images. Accurate 3D hexahedral meshes were successfully generated from the segmented images . CONCLUSIONS With this method, a subject-specific biomechanical model can be constructed directly from a hand-held 2D US measurement, within 10 min, with a minimal user input. The performance of the proposed segmentation algorithm is comparable to or better than algorithms previously described in literature. Moreover, the algorithm is able to segment the CCA, ICA, and ECA including the carotid bifurcation in transverse B-mode images in both healthy and diseased arteries.
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Affiliation(s)
- Joerik de Ruijter
- Department of Biomedical EngineeringEindhoven University of TechnologyEindhoven5600MBThe Netherlands
- Department of Vascular SurgeryCatharina HospitalEindhoven5602ZAThe Netherlands
| | - Marc van Sambeek
- Department of Biomedical EngineeringEindhoven University of TechnologyEindhoven5600MBThe Netherlands
- Department of Vascular SurgeryCatharina HospitalEindhoven5602ZAThe Netherlands
| | - Frans van de Vosse
- Department of Biomedical EngineeringEindhoven University of TechnologyEindhoven5600MBThe Netherlands
| | - Richard Lopata
- Department of Biomedical EngineeringEindhoven University of TechnologyEindhoven5600MBThe Netherlands
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Latha S, Samiappan D, Kumar R. Carotid artery ultrasound image analysis: A review of the literature. Proc Inst Mech Eng H 2020; 234:417-443. [PMID: 31960771 DOI: 10.1177/0954411919900720] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Stroke is one of the prominent causes of death in the recent days. The existence of susceptible plaque in the carotid artery can be used in ascertaining the possibilities of cardiovascular diseases and long-term disabilities. The imaging modality used for early screening of the disease is B-mode ultrasound image of the person in the artery area. The objective of this article is to give a widespread review of the imaging modes and methods used for studying the carotid artery for identifying stroke, atherosclerosis and related cardiovascular diseases. We encompass the review in methods used for artery wall tracking, intima-media, and lumen segmentation which will help in finding the extent of the disease. Due to the characteristics of the imaging modality used, the images have speckle noise which worsens the image quality. Adaptive homomorphic filtering with wavelet and contourlet transforms, Levy Shrink, gamma distribution were used for image denoising. Learning-based neural network approaches for denoising give better edge preservation. Domain knowledge-based segmentation approaches have proved to provide more accurate intima-media thickness measurements. There is a requirement of useful fully automatic segmentation approaches, 3D, 4D systems, and plaque motion analysis. Taking into consideration the image priors like geometry, imaging physics, intensity and temporal data, image analysis has to be performed. Encouragingly more research has focused on content-specific segmentation and classification techniques. With the evaluation of machine learning algorithms, classifying the image as with or without a fat deposit has gained better accuracy and sensitivity. Machine learning-based approaches like self-organizing map, k-nearest neighborhood and support vector machine achieve promising accuracy and sensitivity in classification. The literature reveals that there is more scope in identifying a patient-specific model in a fully automatic manner.
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Affiliation(s)
- S Latha
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Chennai, India
| | - Dhanalakshmi Samiappan
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Chennai, India
| | - R Kumar
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Chennai, India
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Azzopardi C, Camilleri KP, Hicks YA. Bimodal Automated Carotid Ultrasound Segmentation Using Geometrically Constrained Deep Neural Networks. IEEE J Biomed Health Inform 2020; 24:1004-1015. [PMID: 31944969 DOI: 10.1109/jbhi.2020.2965088] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
For asymptomatic patients suffering from carotid stenosis, the assessment of plaque morphology is an important clinical task which allows monitoring of the risk of plaque rupture and future incidents of stroke. Ultrasound Imaging provides a safe and non-invasive modality for this, and the segmentation of media-adventitia boundaries and lumen-intima boundaries of the Carotid artery form an essential part in this monitoring process. In this paper, we propose a novel Deep Neural Network as a fully automated segmentation tool, and its application in delineating both the media-adventitia boundary and the lumen-intima boundary. We develop a new geometrically constrained objective function as part of the Network's Stochastic Gradient Descent optimisation, thus tuning it to the problem at hand. Furthermore, we also apply a bimodal fusion of amplitude and phase congruency data proposed by us in previous work, as an input to the network, as the latter provides an intensity-invariant data source to the network. We finally report the segmentation performance of the network on transverse sections of the carotid. Tests are carried out on an augmented dataset of 81,000 images, and the results are compared to other studies by reporting the DICE coefficient of similarity, modified Hausdorff Distance, sensitivity and specificity. Our proposed modification is shown to yield improved results on the standard network over this larger dataset, with the advantage of it being fully automated. We conclude that Deep Neural Networks provide a reliable trained manner in which carotid ultrasound images may be automatically segmented, using amplitude data and intensity invariant phase congruency maps as a data source.
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Nagaraj Y, Hema Sai Teja A, Narasimhadhan AV. Automatic Segmentation of Intima Media Complex in Carotid Ultrasound Images Using Support Vector Machine. ARABIAN JOURNAL FOR SCIENCE AND ENGINEERING 2018. [DOI: 10.1007/s13369-018-3549-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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Ma L, Kiyomatsu H, Nakagawa K, Wang J, Kobayashi E, Sakuma I. Accurate vessel segmentation in ultrasound images using a local-phase-based snake. Biomed Signal Process Control 2018. [DOI: 10.1016/j.bspc.2018.03.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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12
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Chung SW, Shih CC, Huang CC. Freehand three-dimensional ultrasound imaging of carotid artery using motion tracking technology. ULTRASONICS 2017; 74:11-20. [PMID: 27721196 DOI: 10.1016/j.ultras.2016.09.020] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2016] [Revised: 09/13/2016] [Accepted: 09/26/2016] [Indexed: 05/22/2023]
Abstract
Ultrasound imaging has been extensively used for determining the severity of carotid atherosclerotic stenosis. In particular, the morphological characterization of carotid plaques can be performed for risk stratification of patients. However, using 2D ultrasound imaging for detecting morphological changes in plaques has several limitations. Due to the scan was performed on a single longitudinal cross-section, the selected 2D image is difficult to represent the entire morphology and volume of plaque and vessel lumen. In addition, the precise positions of 2D ultrasound images highly depend on the radiologists' experience, it makes the serial long-term exams of anti-atherosclerotic therapies are difficult to relocate the same corresponding planes by using 2D B-mode images. This has led to the recent development of three-dimensional (3D) ultrasound imaging, which offers improved visualization and quantification of complex morphologies of carotid plaques. In the present study, a freehand 3D ultrasound imaging technique based on optical motion tracking technology is proposed. Unlike other optical tracking systems, the marker is a small rigid body that is attached to the ultrasound probe and is tracked by eight high-performance digital cameras. The probe positions in 3D space coordinates are then calibrated at spatial and temporal resolutions of 10μm and 0.01s, respectively. The image segmentation procedure involves Otsu's and the active contour model algorithms and accurately detects the contours of the carotid arteries. The proposed imaging technique was verified using normal artery and atherosclerotic stenosis phantoms. Human experiments involving freehand scanning of the carotid artery of a volunteer were also performed. The results indicated that compared with manual segmentation, the lowest percentage errors of the proposed segmentation procedure were 7.8% and 9.1% for the external and internal carotid arteries, respectively. Finally, the effect of handshaking was calibrated using the optical tracking system for reconstructing a 3D image.
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Affiliation(s)
- Shao-Wen Chung
- Department of Biomedical Engineering, National Cheng Kung University, Tainan, Taiwan
| | - Cho-Chiang Shih
- Department of Biomedical Engineering, National Cheng Kung University, Tainan, Taiwan
| | - Chih-Chung Huang
- Department of Biomedical Engineering, National Cheng Kung University, Tainan, Taiwan.
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Zahnd G, Kapellas K, van Hattem M, van Dijk A, Sérusclat A, Moulin P, van der Lugt A, Skilton M, Orkisz M. A Fully-Automatic Method to Segment the Carotid Artery Layers in Ultrasound Imaging: Application to Quantify the Compression-Decompression Pattern of the Intima-Media Complex During the Cardiac Cycle. ULTRASOUND IN MEDICINE & BIOLOGY 2017; 43:239-257. [PMID: 27742139 DOI: 10.1016/j.ultrasmedbio.2016.08.016] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2016] [Revised: 08/05/2016] [Accepted: 08/12/2016] [Indexed: 06/06/2023]
Abstract
The aim of this study was to introduce and evaluate a contour segmentation method to extract the interfaces of the intima-media complex in carotid B-mode ultrasound images. The method was applied to assess the temporal variation of intima-media thickness during the cardiac cycle. The main methodological contribution of the proposed approach is the introduction of an augmented dimension to process 2-D images in a 3-D space. The third dimension, which is added to the two spatial dimensions of the image, corresponds to the tentative local thickness of the intima-media complex. The method is based on a dynamic programming scheme that runs in a 3-D space generated with a shape-adapted filter bank. The optimal solution corresponds to a single medial axis representation that fully describes the two anatomical interfaces of the arterial wall. The method is fully automatic and does not require any input from the user. The method was trained on 60 subjects and validated on 184 other subjects from six different cohorts and four different medical centers. The arterial wall was successfully segmented in all analyzed images (average pixel size = 57 ± 20 mm), with average segmentation errors of 47 ± 70 mm for the lumen-intima interface, 55 ± 68 mm for the media-adventitia interface and 66 ± 90 mm for the intima-media thickness. The amplitude of the temporal variations in IMT during the cardiac cycle was significantly higher in the diseased population than in healthy volunteers (106 ± 48 vs. 86 ± 34 mm, p = 0.001). The introduced framework is a promising approach to investigate an emerging functional parameter of the arterial wall by assessing the cyclic compression-decompression pattern of the tissues.
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Affiliation(s)
- Guillaume Zahnd
- Biomedical Imaging Group Rotterdam, Departments of Radiology & Nuclear Medicine and Medical Informatics, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands.
| | - Kostas Kapellas
- Australian Research Centre for Population Oral Health, School of Dentistry, University of Adelaide, Adelaide, Australia
| | - Martijn van Hattem
- Department of Radiology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands
| | - Anouk van Dijk
- Department of Radiology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands
| | - André Sérusclat
- Department of Radiology, Louis Pradel Hospital, Hospices Civils de Lyon, Université Lyon 1, Lyon, France
| | - Philippe Moulin
- Department of Endocrinology, Louis Pradel Hospital, Hospices Civils de Lyon, Université Lyon 1, Lyon, France
| | - Aad van der Lugt
- Department of Radiology, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands
| | - Michael Skilton
- Boden Institute of Obesity, Nutrition, Exercise and Eating Disorders, University of Sydney, Sydney, Australia
| | - Maciej Orkisz
- Univ Lyon, INSA-Lyon, Université Lyon 1, UJM-Saint Etienne, CNRS, Inserm, CREATIS UMR 5220, U1206, F-69621, Lyon, France
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14
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Li H, Zhang S, Ma R, Chen H, Xi S, Zhang J, Fang J. Ultrasound intima-media thickness measurement of the carotid artery using ant colony optimization combined with a curvelet-based orientation-selective filter. Med Phys 2016; 43:1795. [PMID: 27036577 DOI: 10.1118/1.4943567] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE Automatic measurement of the intima-media thickness (IMT) from ultrasound carotid images is an important task in clinical diagnosis. Many computer-based techniques for IMT measurement have been proposed to overcome the limits of manual segmentation. However, the robustness of the algorithms would be influenced by the inherent speckle noise of ultrasound image. This paper proposed a curvelet guided ant colony optimization (CGACO) strategy that could achieve satisfied accuracy for IMT measurement with improved robustness to noise. METHODS The curvelet-based orientation-selective (CBOS) filter was first introduced for speckle removal and edge enhancement. Different from conventional methods, CBOS filter processes the curvelet coefficients by orientations rather than by magnitude. Then, a specially designed two-leg ant colony optimization technique, combined with Otsu thresholding and Sobel edge detector, was proposed as a novel segmentation method to extract the media-adventitia (MA) and the lumen-intima (LI) boundaries. Finally, a coupled snake model was employed to further smooth the contours of MA and LI. RESULTS In addition to 224 carotid artery images acquired from 34 participants, simulated speckled images with nine levels of noise were also included in the database. The mean absolute distance errors of CGACO for LI interface tracings, MA interface tracings, and IMT measurements were 0.030 ± 0.027, 0.039 ± 0.036, and 0.041 ± 0.036 mm, respectively. Besides, CGACO had a correlation coefficient as high as 0.992 and a bias as low as -0.008. All these measures were comparable to or better than a previous technique and the manual segmentation. On the other hand, CGACO had the highest success rate of 98.7% in the segmentation of real data. It also maintained a much higher success rate in the segmentation of simulated images with different levels of speckle noise. CONCLUSIONS The proposed technique showed accurate IMT measurement results. Furthermore, benefiting from the CBOS filter, the robustness to noise of the algorithm was substantially improved. Therefore, CGACO could provide a reliable way to segment the carotid artery from ultrasound images and could be used in clinical practice of IMT measurement, particularly in early atherosclerotic stages.
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Affiliation(s)
- Hao Li
- Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
| | - Shijie Zhang
- Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
| | - Rui Ma
- VINNO Technology Co., Ltd., Suzhou 215123, China
| | - Huiren Chen
- VINNO Technology Co., Ltd., Suzhou 215123, China
| | - Shui Xi
- VINNO Technology Co., Ltd., Suzhou 215123, China
| | - Jue Zhang
- Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China and College of Engineering, Peking University, Beijing 100871, China
| | - Jing Fang
- Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China and College of Engineering, Peking University, Beijing 100871, China
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15
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Chen Y, Qiu W, Kishimoto J, Gao Y, Chan RHM, de Ribaupierre S, Fenster A, Chiu B. A framework for quantification and visualization of segmentation accuracy and variability in 3D lateral ventricle ultrasound images of preterm neonates. Med Phys 2015; 42:6387-405. [PMID: 26520730 DOI: 10.1118/1.4932366] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE Intraventricular hemorrhage (IVH) is a major cause of brain injury in preterm neonates. Three dimensional ultrasound (US) imaging systems have been developed to visualize 3D anatomical structure of preterm neonatal intracranial ventricular system with IVH and ventricular dilation. To allow quantitative analysis, the ventricle system is required to be segmented accurately and efficiently from 3D US images. Although semiautomatic segmentation algorithms have been developed, local segmentation accuracy and variability associated with these algorithms should be evaluated statistically before they can be applied in clinical settings. This work proposes a statistical framework to quantify the local accuracy and variability and performs statistical tests to identify locations where the semiautomatically segmented surfaces are significantly different from manually segmented surfaces. METHODS Three dimensional lateral ventricle US images of preterm neonates were each segmented six times manually and using a semiautomated segmentation algorithm. The local difference between manually and algorithmically segmented surfaces as well as the segmentation variability for each method was computed and superimposed on the ventricular surface of each subject. To summarize the segmentation performance for a whole group of subjects, the subject-specific local difference and standard deviation maps were registered onto a 3D template ventricular surface using a nonrigid registration algorithm. Pointwise, intersubject average accuracy and pooled variability for the whole group of subjects can be computed and visualized on the template surface, providing a summary of performance of the segmentation algorithm for the whole group of ventricles with highly variable geometry. In addition to pointwise statistical analysis performed on the template surface, statistical conclusion regarding the accuracy of the segmentation algorithm was made for subregions and the whole ventricle with the spatial correlation of pointwise accuracy taken into account. RESULTS Ten 3D US images were involved in this study. Pointwise local difference, ΔS, its absolute value |ΔS| as well as the standard deviations of the manual and algorithm segmentations were computed and superimposed on the each ventricle surface. Regions with lower segmentation accuracy and higher segmentation variability can be identified from these maps, and the localized information was applied to improve the accuracy of the algorithm. Intersubject average ΔS and |ΔS| as well as pooled standard deviations was computed on the template surface. Intersubject average ΔS and |ΔS| indicated that the algorithm underestimated regions in the neighborhood of the tips of anterior, inferior, and posterior horns. Intersubject pooled standard deviations indicated that manual segmentation had a higher segmentation variability than algorithm segmentation over the whole ventricle. Statistical analysis on the template surface showed that there was significant difference between algorithm and manual methods for segmenting the right lateral ventricle but not for the left lateral ventricle. CONCLUSIONS A framework was proposed for evaluating, visualizing, and summarizing the local accuracy and variability of a segmentation algorithm. This framework can be used for improving the accuracy of segmentation algorithms, as well as providing useful feedback to improve the manual segmentation performance. More importantly, this framework can be applied for longitudinal monitoring of local ventricular changes of neonates with IVH.
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Affiliation(s)
- Yimin Chen
- Department of Electronic Engineering, City University of Hong Kong, Kowloon, Hong Kong
| | - Wu Qiu
- Imaging Research Laboratories, Robarts Research Institute, The University of Western Ontario, London, Ontario N6A 5K8, Canada
| | - Jessica Kishimoto
- Imaging Research Laboratories, Robarts Research Institute, The University of Western Ontario, London, Ontario N6A 5K8, Canada
| | - Yuan Gao
- Department of Electronic Engineering, City University of Hong Kong, Kowloon, Hong Kong
| | - Rosa H M Chan
- Department of Electronic Engineering, City University of Hong Kong, Kowloon, Hong Kong
| | - Sandrine de Ribaupierre
- Department of Clinical Neurological Science, The University of Western Ontario, London, Ontario N6A 5K8, Canada
| | - Aaron Fenster
- Imaging Research Laboratories, Robarts Research Institute, The University of Western Ontario, London, Ontario N6A 5K8, Canada
| | - Bernard Chiu
- Department of Electronic Engineering, City University of Hong Kong, Kowloon, Hong Kong
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16
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Sisini F, Tessari M, Gadda G, Di Domenico G, Taibi A, Menegatti E, Gambaccini M, Zamboni P. An ultrasonographic technique to assess the jugular venous pulse: a proof of concept. ULTRASOUND IN MEDICINE & BIOLOGY 2015; 41:1334-1341. [PMID: 25704322 DOI: 10.1016/j.ultrasmedbio.2014.12.666] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2014] [Revised: 12/19/2014] [Accepted: 12/29/2014] [Indexed: 06/04/2023]
Abstract
The purpose of the work described here was to investigate the feasibility of assessing the jugular venous pulse (JVP) using ultrasound (US) equipment. Three young healthy subjects underwent a B-mode US scan of the internal jugular vein (IJV) to acquire a sonogram sequence in the transverse plane. On each acquired sonogram, the IJV contour was manually traced, and both the cross-sectional area (CSA) and the perimeter were measured. The CSA data set represents the US jugular diagram (USJD). The arterial distension waveform of the subjects was compared with its USJD. The correlation between the CSA and the perimeter was assessed during the cardiac cycle to verify IJV distension. For each subject, a short sonogram sequence of a few seconds was recorded, and the USJD obtained exhibited periodic behavior. Furthermore, for all subjects, the CSA was found to be correlated with the perimeter (Pearson coefficient, R > 0.9), indicating that the IJV in supine position is distended. We compared 390 manually traced contours of the IJV cross-sectional area with corresponding values semi-automatically calculated by an algorithm developed in-house. For all subjects, the sensitivity, specificity and accuracy were around 95%, 85% and 90% respectively. We found that a diagram reflecting the JVP can be obtained by analyzing a B-mode sonogram sequence of the IJV; such a diagram can result in a new methodology to assess the IJV functionality.
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Affiliation(s)
- Francesco Sisini
- Department of Physics and Earth Sciences, University of Ferrara, Ferrara, Italy.
| | - Mirko Tessari
- Vascular Diseases Center, University of Ferrara, Cona, Italy
| | - Giacomo Gadda
- Department of Physics and Earth Sciences, University of Ferrara, Ferrara, Italy
| | | | - Angelo Taibi
- Department of Physics and Earth Sciences, University of Ferrara, Ferrara, Italy
| | - Erica Menegatti
- Vascular Diseases Center, University of Ferrara, Cona, Italy
| | - Mauro Gambaccini
- Department of Physics and Earth Sciences, University of Ferrara, Ferrara, Italy
| | - Paolo Zamboni
- Vascular Diseases Center, University of Ferrara, Cona, Italy
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Carvalho DDB, Akkus Z, van den Oord SCH, Schinkel AFL, van der Steen AFW, Niessen WJ, Bosch JG, Klein S. Lumen segmentation and motion estimation in B-mode and contrast-enhanced ultrasound images of the carotid artery in patients with atherosclerotic plaque. IEEE TRANSACTIONS ON MEDICAL IMAGING 2015; 34:983-993. [PMID: 25423650 DOI: 10.1109/tmi.2014.2372784] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
In standard B-mode ultrasound (BMUS), segmentation of the lumen of atherosclerotic carotid arteries and studying the lumen geometry over time are difficult owing to irregular lumen shapes, noise, artifacts, and echolucent plaques. Contrast enhanced ultrasound (CEUS) improves lumen visualization, but lumen segmentation remains challenging owing to varying intensities, CEUS-specific artifacts and lack of tissue visualization. To overcome these challenges, we propose a novel method using simultaneously acquired BMUS&CEUS image sequences. Initially, the method estimates nonrigid motion (NME) from the image sequences, using intensity-based image registration. The motion-compensated image sequence is then averaged to obtain a single "epitome" image with improved signal-to-noise ratio. The lumen is segmented from the epitome image through an intensity joint-histogram classification and a graph-based segmentation. NME was validated by comparing displacements with manual annotations in 11 carotids. The average root mean square error (RMSE) was 112±73 μm . Segmentation results were validated against manual delineations in the epitome images of two different datasets, respectively containing 11 (RMSE 191±43 μm) and 10 (RMSE 351±176 μm ) carotids. From the deformation fields, we derived arterial distensibility with values comparable to the literature. The average errors in all experiments were in the inter-observer variability range. To the best of our knowledge, this is the first study exploiting combined BMUS&CEUS images for atherosclerotic carotid lumen segmentation.
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Hossain MM, AlMuhanna K, Zhao L, Lal BK, Sikdar S. Semiautomatic segmentation of atherosclerotic carotid artery wall volume using 3D ultrasound imaging. Med Phys 2015; 42:2029-43. [DOI: 10.1118/1.4915925] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Loizou C, Petroudi S, Pantziaris M, Nicolaides A, Pattichis C. An integrated system for the segmentation of atherosclerotic carotid plaque ultrasound video. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2014; 61:86-101. [PMID: 24402898 DOI: 10.1109/tuffc.2014.6689778] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The robust border identification of atherosclerotic carotid plaque, the corresponding degree of stenosis of the common carotid artery (CCA), and also the characteristics of the arterial wall, including plaque size, composition, and elasticity, have significant clinical relevance for the assessment of future cardiovascular events. To facilitate the follow-up and analysis of the carotid stenosis in serial clinical investigations, we propose and evaluate an integrated system for the segmentation of atherosclerotic carotid plaque in ultrasound videos of the CCA based on video frame normalization, speckle reduction filtering, M-mode state-based identification, parametric active contours, and snake segmentation. Initially, the cardiac cycle in each video is identified and the video M-mode is generated, thus identifying systolic and diastolic states. The video is then segmented for a time period of at least one full cardiac cycle. The algorithm is initialized in the first video frame of the cardiac cycle, with human assistance if needed, and the moving atherosclerotic plaque borders are tracked and segmented in the subsequent frames. Two different initialization methods are investigated in which initial contours are estimated every 20 video frames. In the first initialization method, the initial snake contour is estimated using morphology operators; in the second initialization method, the Chan-Vese active contour model is used. The performance of the algorithm is evaluated on 43 real CCA digitized videos from B-mode longitudinal ultrasound segments and is compared with the manual segmentations of an expert, available every 20 frames in a time span of 3 to 5 s, covering, in general, 2 cardiac cycles. The segmentation results were very satisfactory, according to the expert objective evaluation, for the two different methods investigated, with true-negative fractions (TNF-specificity) of 83.7 ± 7.6% and 84.3 ± 7.5%; true-positive fractions (TPF-sensitivity) of 85.42 ± 8.1% and 86.1 ± 8.0%; and between the ground truth and the proposed segmentation method, kappa indices (KI) of 84.6% and 85.3% and overlap indices of 74.7% and 75.4%. The segmentation contours were also used to compute the cardiac state identification and radial, longitudinal, and shear strain indices for the CCA wall and plaque between the asymptomatic and symptomatic groups were investigated. The results of this study show that the integrated system investigated in this study can be successfully used for the automated video segmentation of the CCA plaque in ultrasound videos.
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20
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Ukwatta E, Yuan J, Buchanan D, Chiu B, Awad J, Qiu W, Parraga G, Fenster A. Three-dimensional segmentation of three-dimensional ultrasound carotid atherosclerosis using sparse field level sets. Med Phys 2013; 40:052903. [PMID: 23635296 DOI: 10.1118/1.4800797] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE Three-dimensional ultrasound (3DUS) vessel wall volume (VWV) provides a 3D measurement of carotid artery wall remodeling and atherosclerotic plaque and is sensitive to temporal changes of carotid plaque burden. Unfortunately, although 3DUS VWV provides many advantages compared to measurements of arterial wall thickening or plaque alone, it is still not widely used in research or clinical practice because of the inordinate amount of time required to train observers and to generate 3DUS VWV measurements. In this regard, semiautomated methods for segmentation of the carotid media-adventitia boundary (MAB) and the lumen-intima boundary (LIB) would greatly improve the time to train observers and for them to generate 3DUS VWV measurements with high reproducibility. METHODS The authors describe a 3D algorithm based on a modified sparse field level set method for segmenting the MAB and LIB of the common carotid artery (CCA) from 3DUS images. To the authors' knowledge, the proposed algorithm is the first direct 3D segmentation method, which has been validated for segmenting both the carotid MAB and the LIB from 3DUS images for the purpose of computing VWV. Initialization of the algorithm requires the observer to choose anchor points on each boundary on a set of transverse slices with a user-specified interslice distance (ISD), in which larger ISD requires fewer user interactions than smaller ISD. To address the challenges of the MAB and LIB segmentations from 3DUS images, the authors integrated regional- and boundary-based image statistics, expert initializations, and anatomically motivated boundary separation into the segmentation. The MAB is segmented by incorporating local region-based image information, image gradients, and the anchor points provided by the observer. Moreover, a local smoothness term is utilized to maintain the smooth surface of the MAB. The LIB is segmented by constraining its evolution using the already segmented surface of the MAB, in addition to the global region-based information and the anchor points. The algorithm-generated surfaces were sliced and evaluated with respect to manual segmentations on a slice-by-slice basis using 21 3DUS images. RESULTS The authors used ISD of 1, 2, 3, 4, and 10 mm for algorithm initialization to generate segmentation results. The algorithm-generated accuracy and intraobserver variability results are comparable to the previous methods, but with fewer user interactions. For example, for the ISD of 3 mm, the algorithm yielded an average Dice coefficient of 94.4% ± 2.2% and 90.6% ± 5.0% for the MAB and LIB and the coefficient of variation of 6.8% for computing the VWV of the CCA, while requiring only 1.72 min (vs 8.3 min for manual segmentation) for a 3DUS image. CONCLUSIONS The proposed 3D semiautomated segmentation algorithm yielded high-accuracy and high-repeatability, while reducing the expert interaction required for initializing the algorithm than the previous 2D methods.
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Affiliation(s)
- E Ukwatta
- Biomedical Engineering Graduate Program and Robarts Research Institute, The University of Western Ontario, London, Ontario N6A 3K7, Canada.
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21
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Cheng J, Li H, Xiao F, Fenster A, Zhang X, He X, Li L, Ding M. Fully automatic plaque segmentation in 3-D carotid ultrasound images. ULTRASOUND IN MEDICINE & BIOLOGY 2013; 39:2431-2446. [PMID: 24063959 DOI: 10.1016/j.ultrasmedbio.2013.07.007] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2012] [Revised: 06/08/2013] [Accepted: 07/15/2013] [Indexed: 06/02/2023]
Abstract
Automatic segmentation of the carotid plaques from ultrasound images has been shown to be an important task for monitoring progression and regression of carotid atherosclerosis. Considering the complex structure and heterogeneity of plaques, a fully automatic segmentation method based on media-adventitia and lumen-intima boundary priors is proposed. This method combines image intensity with structure information in both initialization and a level-set evolution process. Algorithm accuracy was examined on the common carotid artery part of 26 3-D carotid ultrasound images (34 plaques ranging in volume from 2.5 to 456 mm(3)) by comparing the results of our algorithm with manual segmentations of two experts. Evaluation results indicated that the algorithm yielded total plaque volume (TPV) differences of -5.3 ± 12.7 and -8.5 ± 13.8 mm(3) and absolute TPV differences of 9.9 ± 9.5 and 11.8 ± 11.1 mm(3). Moreover, high correlation coefficients in generating TPV (0.993 and 0.992) between algorithm results and both sets of manual results were obtained. The automatic method provides a reliable way to segment carotid plaque in 3-D ultrasound images and can be used in clinical practice to estimate plaque measurements for management of carotid atherosclerosis.
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Affiliation(s)
- Jieyu Cheng
- Medical Ultrasound Laboratory, Department of Biomedical Engineering, Huazhong University of Science and Technology, Wuhan, China
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Chiu B, Ukwatta E, Shavakh S, Fenster A. Quantification and visualization of carotid segmentation accuracy and precision using a 2D standardized carotid map. Phys Med Biol 2013; 58:3671-703. [DOI: 10.1088/0031-9155/58/11/3671] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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23
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Ultrasound common carotid artery segmentation based on active shape model. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2013; 2013:345968. [PMID: 23533535 PMCID: PMC3606761 DOI: 10.1155/2013/345968] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2012] [Revised: 01/29/2013] [Accepted: 01/31/2013] [Indexed: 01/27/2023]
Abstract
Carotid atherosclerosis is a major reason of stroke, a leading cause of death and disability. In this paper, a segmentation method based on Active Shape Model (ASM) is developed and evaluated to outline common carotid artery (CCA) for carotid atherosclerosis computer-aided evaluation and diagnosis. The proposed method is used to segment both media-adventitia-boundary (MAB) and lumen-intima-boundary (LIB) on transverse views slices from three-dimensional ultrasound (3D US) images. The data set consists of sixty-eight, 17 × 2 × 2, 3D US volume data acquired from the left and right carotid arteries of seventeen patients (eight treated with 80 mg atorvastatin and nine with placebo), who had carotid stenosis of 60% or more, at baseline and after three months of treatment. Manually outlined boundaries by expert are adopted as the ground truth for evaluation. For the MAB and LIB segmentations, respectively, the algorithm yielded Dice Similarity Coefficient (DSC) of 94.4% ± 3.2% and 92.8% ± 3.3%, mean absolute distances (MAD) of 0.26 ± 0.18 mm and 0.33 ± 0.21 mm, and maximum absolute distances (MAXD) of 0.75 ± 0.46 mm and 0.84 ± 0.39 mm. It took 4.3 ± 0.5 mins to segment single 3D US images, while it took 11.7 ± 1.2 mins for manual segmentation. The method would promote the translation of carotid 3D US to clinical care for the monitoring of the atherosclerotic disease progression and regression.
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24
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Moraru L, Moldovanu S. Comparative study on the performance of textural image features for active contour segmentation. SCIENCE CHINA. LIFE SCIENCES 2012; 55:637-644. [PMID: 22864838 DOI: 10.1007/s11427-012-4344-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2012] [Accepted: 06/08/2012] [Indexed: 06/01/2023]
Abstract
We present a computerized method for the semi-automatic detection of contours in ultrasound images. The novelty of our study is the introduction of a fast and efficient image function relating to parametric active contour models. This new function is a combination of the gray-level information and first-order statistical features, called standard deviation parameters. In a comprehensive study, the developed algorithm and the efficiency of segmentation were first tested for synthetic images. Tests were also performed on breast and liver ultrasound images. The proposed method was compared with the watershed approach to show its efficiency. The performance of the segmentation was estimated using the area error rate. Using the standard deviation textural feature and a 5×5 kernel, our curve evolution was able to produce results close to the minimal area error rate (namely 8.88% for breast images and 10.82% for liver images). The image resolution was evaluated using the contrast-to-gradient method. The experiments showed promising segmentation results.
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Affiliation(s)
- Luminita Moraru
- Dunarea de Jos University of Galati, Galati, RO-800008, Romania.
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25
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Molinari F, Meiburger KM, Saba L, Zeng G, Acharya UR, Ledda M, Nicolaides A, Suri JS. Fully automated dual-snake formulation for carotid intima-media thickness measurement. A new approach. JOURNAL OF ULTRASOUND IN MEDICINE : OFFICIAL JOURNAL OF THE AMERICAN INSTITUTE OF ULTRASOUND IN MEDICINE 2012; 31:1123-1136. [PMID: 22733861 DOI: 10.7863/jum.2012.31.7.1123] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Automated computer-aided detection systems for measurement of the carotid intima-media thickness (IMT) are becoming popular. These systems yield lumen-intima (LI) and media-adventitia (MA) borders. In this work, we developed and validated a novel and patented completely automated IMT measurement system called carotid measurement using dual snakes (CMUDS): a class of AtheroEdge system (Global Biomedical Technologies, Inc, Roseville, CA). CMUDS is modeled as a dual parametric system corresponding to LI and MA borders with initialization from the far adventitia layer. The novelty of CMUDS is the first-order absolute moment-based external energy, which provides stable deformation. The dual snakes evolve simultaneously and are forced to maintain a regularized distance to prevent collapsing or bleeding. Two independent readers manually traced the LI/MA boundaries of a multi-institutional, multi-ethnic, and multi-scanner database of 665 longitudinal images for performance evaluation. CMUDS was also benchmarked against a previously developed automated technique. CMUDS correctly processed 660 images (99.2% success). The differences between the CMUDS and two manual IMT measurements (mean ± SD) were 0.013 ± 0.216 and -0.021 ± 0.197 mm, respectively. The corresponding figures of merit for CMUDS compared to reader tracings were 98.4% and 97.5%. Compared to the previous technique (IMT differences, 0.022 ± 0.276 and -0.012 ± 0.266 mm), CMUDS improved accuracy (Wilcoxon P < 0.009) and variability (Fisher P < 10(-8)). Among different resolution images from original equipment manufacturer ultrasound scanners, CMUDS performed best with high-resolution images corresponding to 0.0789 mm/pixel. Accuracy in IMT measurement with the proposed automated CMUDS technique makes this system adaptable to large multi-center studies, in which such an IMT measurement system would be very useful tool.
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Affiliation(s)
- Filippo Molinari
- BioLab, Department of Electronics and Telecommunications, Politecnico di Torino, Corso Duca Degli Abruzzi 24 10129 Torino, Italy.
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Loizou CP, Petroudi S, Pattichis CS, Pantziaris M, Kasparis T, Nicolaides A. Segmentation of atherosclerotic carotid plaque in ultrasound video. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2012; 2012:53-56. [PMID: 23365830 DOI: 10.1109/embc.2012.6345869] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
The degree of stenosis of the common carotid artery (CCA) but also the characteristics of the arterial wall including plaque size, composition and elasticity represent important predictors used in the assessment of the risk for future cardiovascular events. This paper proposes and evaluates an integrated system for the segmentation of atherosclerotic carotid plaque in ultrasound video of the CCA based on normalization, speckle reduction filtering (with the hybrid median filter) and parametric active contours. The algorithm is initialized in the first video frame of the cardiac cycle with human assistance and the moving atherosclerotic plaque borders are tracked and segmented in the subsequent frames. The algorithm is evaluated on 10 real CCA digitized videos from B-mode longitudinal ultrasound segments and is compared with the manual segmentations of an expert, for every 20 frames in a time span of 3-5 seconds, covering in general 2 cardiac cycles. The segmentation results are very satisfactory with a true negative fraction (TNF) of 79.3%, a true-positive fraction (TPF) of 78.12%, a false-positive fraction (FPF) of 6.7% and a false-negative fraction (FNF) of 19.6% between the ground truth and the presented plaque segmentations, a Williams index (KI) of 80.3%, an overlap index of 71.5%, a specificity of 0.88±0.09, a precision of 0.86±0.10 and an effectiveness measure of 0.77±0.09. The results show that integrated system investigated in this study could be successfully used for the automated video segmentation of the carotid plaque.
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Affiliation(s)
- C P Loizou
- Department of Computer Science, Intercollege, Limassol, Cyprus.
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Santhiyakumari N, Rajendran P, Madheswaran M, Suresh S. Detection of the intima and media layer thickness of ultrasound common carotid artery image using efficient active contour segmentation technique. Med Biol Eng Comput 2011; 49:1299-310. [DOI: 10.1007/s11517-011-0800-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2010] [Accepted: 07/02/2011] [Indexed: 11/29/2022]
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Ukwatta E, Awad J, Ward AD, Buchanan D, Samarabandu J, Parraga G, Fenster A. Three-dimensional ultrasound of carotid atherosclerosis: Semiautomated segmentation using a level set-based method. Med Phys 2011; 38:2479-93. [DOI: 10.1118/1.3574887] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Destrempes F, Meunier J, Giroux MF, Soulez G, Cloutier G. Segmentation of plaques in sequences of ultrasonic B-mode images of carotid arteries based on motion estimation and a Bayesian model. IEEE Trans Biomed Eng 2011; 58. [PMID: 21411400 DOI: 10.1109/tbme.2011.2127476] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The goal of this work is to perform a segmentation of atherosclerotic plaques in view of evaluating their burden and to provide boundaries for computing properties such as the plaque deformation and elasticity distribution (elastogram and modulogram). The echogenicity of a region of interest comprising the plaque, the vessel lumen, and the adventitia of the artery wall in an ultrasonic B-mode image was modeled by mixtures of three Nakagami distributions, which yielded the likelihood of a Bayesian segmentation model. The main contribution of this paper is the estimation of the motion field and its integration into the prior of the Bayesian model that included a local geometrical smoothness constraint, as well as an original spatiotemporal cohesion constraint. The Maximum A Posteriori (MAP) of the proposed model was computed with a variant of the Exploration/Selection (ES) algorithm. The starting point is a manual segmentation of the first frame. The proposed method was quantitatively compared with manual segmentations of all frames by an expert technician. Various measures were used for this evaluation, including the mean point-to-point distance and the Hausdorff distance. Results were evaluated on 94 sequences of 33 patients (for a total of 8988 images). We report a mean point-to- point distance of 0.24 ± 0.08 mm and a Hausdorff distance of 1.24 ± 0.40 mm. Our tests showed that the algorithm was not sensitive to the degree of stenosis or calcification.
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30
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Matsakou AI, Golemati S, Stoitsis JS, Nikita KS. Automated detection of the carotid artery wall in longitudinal B-mode images using active contours initialized by the Hough transform. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2011; 2011:571-574. [PMID: 22254374 DOI: 10.1109/iembs.2011.6090106] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
In this paper, a fully automatic active-contour-based segmentation method is presented, for detecting the carotid artery wall in longitudinal B-mode ultrasound images. A Hough-transform-based methodology is used for the definition of the initial snake, followed by a gradient vector flow (GVF) snake deformation for the final contour detection. The GVF snake is based on the calculation of the image edge map and the calculation of GVF field which guides its deformation for the estimation of the real arterial wall boundaries. In twenty cases there was no significant difference between the automated segmentation and the manual diameter measurements. The sensitivity, specificity and accuracy were 0.97, 0.99 and 0.98, respectively, for both diastolic and systolic cases. In conclusion, the proposed methodology provides an accurate and reliable way to segment ultrasound images of the carotid artery.
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Affiliation(s)
- A I Matsakou
- Department of Electrical and Computer Engineering, National Technical University of Athens, Athens 15780, Greece.
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31
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Kyriacou EC, Pattichis C, Pattichis M, Loizou C, Christodoulou C, Kakkos SK, Nicolaides A. A review of noninvasive ultrasound image processing methods in the analysis of carotid plaque morphology for the assessment of stroke risk. ACTA ACUST UNITED AC 2010; 14:1027-38. [PMID: 20378477 DOI: 10.1109/titb.2010.2047649] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Noninvasive ultrasound imaging of carotid plaques allows for the development of plaque-image analysis methods associated with the risk of stroke. This paper presents several plaque-image analysis methods that have been developed over the past years. The paper begins with a review of clinical methods for visual classification that have led to standardized methods for image acquisition, describes methods for image segmentation and denoising, and provides an overview of the several texture-feature extraction and classification methods that have been applied. We provide a summary of emerging trends in 3-D imaging methods and plaque-motion analysis. Finally, we provide a discussion of the emerging trends and future directions in our concluding remarks.
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Affiliation(s)
- Efthyvoulos C Kyriacou
- Department of Computer Science and Engineering, Frederick University, CY-3080 Limassol, Cyprus.
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32
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Chiu B, Krasinski A, Spence JD, Parraga G, Fenster A. Three-dimensional carotid ultrasound segmentation variability dependence on signal difference and boundary orientation. ULTRASOUND IN MEDICINE & BIOLOGY 2010; 36:95-110. [PMID: 19900751 DOI: 10.1016/j.ultrasmedbio.2009.08.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2008] [Revised: 07/08/2009] [Accepted: 08/05/2009] [Indexed: 05/28/2023]
Abstract
Quantitative measurements of the progression (or regression) of carotid plaque burden are important in monitoring patients and evaluating new treatment options. We previously developed a quantitative metric to analyze changes in carotid plaque morphology from 3-D ultrasound (US) on a point-by-point basis. This method requires multiple segmentations of the arterial wall and lumen boundaries to obtain the local standard deviation (SD) of vessel-wall-plus-plaque thickness (VWT) so that t-tests could be used to determine whether a change in VWT is statistically significant. However, the requirement for multiple segmentations makes clinical trials laborious and time-consuming. Therefore, this study was designed to establish the relationship between local segmentation SD and local signal difference on the arterial wall and lumen boundaries. We propose metrics to quantify segmentation SD and signal difference on a point-by-point basis, and studied whether the signal difference at arterial wall or lumen boundaries could be used to predict local segmentation SD. The ability to predict the local segmentation SD could eliminate the need of repeated segmentations of a 2-D transverse image to obtain the local segmentation standard deviation, thereby making clinical trials less laborious and saving time. Six subjects involved in this study were associated with different degrees of atherosclerosis: three carotid stenosis subjects with mean plaque area >3 cm(2) and >60% carotid stenosis were involved in a clinical study evaluating the effect of atorvastatin, a cholesterol-lowering and plaque-stabilizing drug; and three subjects with carotid plaque area >0.5 cm(2) were subjects with moderate atherosclerosis. Our results suggest that when local signal difference is higher than 8 greyscale value (GSV), the local segmentation SD stabilizes at 0.05 mm and is thus predictable. This information provides a target value of local signal difference on the arterial boundaries that should be achieved to obtain an accurate prediction of local segmentation SD. (E-mail: bcychiu@alumni.uwo.ca).
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Affiliation(s)
- Bernard Chiu
- Imaging Research Laboratories, Robarts Research Institute, London, Ontario, Canada.
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33
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Krasinski A, Chiu B, Spence JD, Fenster A, Parraga G. Three-dimensional ultrasound quantification of intensive statin treatment of carotid atherosclerosis. ULTRASOUND IN MEDICINE & BIOLOGY 2009; 35:1763-1772. [PMID: 19647921 DOI: 10.1016/j.ultrasmedbio.2009.05.017] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2008] [Revised: 04/13/2009] [Accepted: 05/25/2009] [Indexed: 05/28/2023]
Abstract
This study was designed to evaluate 3-D ultrasound (3DUS)-derived vessel wall volume (VWV), a 3-D measurement of the carotid artery intima and media, including atherosclerotic plaque, in patients enrolled in a randomized placebo-controlled three-month study of intensive atorvastatin treatment. Thirty-five subjects with carotid stenosis >60% who provided written informed consent and completed a randomized, double-blind, placebo-controlled study were evaluated at baseline and at three months after receiving either 80 mg atorvastatin (16 subjects, nine male, mean age 68+/-8.6 y) or placebo (19 subjects, 15 male, mean age 70+/-9.4 y) daily. 3DUS images were acquired and 3DUS VWV was manually segmented by a single observer. Individual lumen and wall segmentation contours were also used to generate carotid atherosclerosis thickness difference maps by establishing correspondence between points along the vessel wall and lumen segmentation contour surfaces, and digitally subtracting registered baseline and follow-up thickness maps. 3DUS VWV increased by 70+/-140 mm(3) (+4.9+/-10.3%) in the placebo group and decreased by 30+/-110 mm(3) (-1.4+/-7.7%) in the atorvastatin group (p<0.05). Two-dimensional maps generated from the VWV measurements show localized heterogeneity and vessel wall thickness changes for all subjects, mainly in the common carotid artery. Carotid 3DUS VWV is a quantitative measure of atherosclerosis burden including the intima, media and plaque, with sensitivity to detect changes over short periods of time. Quantitative VWV thickness difference maps provide visual evidence of the spatial and temporal dynamics of carotid artery changes.
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Affiliation(s)
- Adam Krasinski
- Imaging Research Laboratories, Robarts Research Institute, The University of Western Ontario, London, Ontario, Canada N6A 5K8
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34
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Collette M, Leftheriotis G, Humeau A. Modeling and interpretation of the bioelectrical impedance signal for the determination of the local arterial stiffness. Med Phys 2009; 36:4340-8. [PMID: 19928064 DOI: 10.1118/1.3213084] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Affiliation(s)
- Mathieu Collette
- Groupe esaip, 18 rue du 8 Mai 1945, BP 80022, 49180 Saint Barthélemy d'Anjou Cedex, France.
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35
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Stoitsis J, Golemati S, Kendros S, Nikita KS. Automated detection of the carotid artery wall in B-mode ultrasound images using active contours initialized by the Hough Transform. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2009; 2008:3146-9. [PMID: 19163374 DOI: 10.1109/iembs.2008.4649871] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Automatic segmentation of the arterial lumen from ultrasound images is an important and often challenging task in clinical diagnosis. We previously used the Hough Transform (HT) to automatically extract circles from sequences of B-mode ultrasound images of transverse sections of the carotid artery. In this paper, an active-contour-based methodology is suggested, initialized by the HT circle, in an attempt to extend previous findings and to accurately detect the arterial wall boundary. The methodology is based on the generation of a gradient vector flow field, an approach attempting to overcome conventional active contours constraints. Contour estimation is then achieved by deforming the initial curve (circle) based on the gradient vector flow field. In ten normal subjects, the specificity and accuracy of the segmentation were on average higher than 0.98, whereas the sensitivity was higher than 0.82. The methodology was also applied to four subjects with atherosclerosis, in which sensitivity, specificity and accuracy were comparable to those of normal subjects. In conclusion, the HT-initialized active contours methodology provides a reliable tool to detect the carotid artery wall in ultrasound images and can be used in clinical practice.
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Affiliation(s)
- J Stoitsis
- Department of Electrical and Computer Engineering, National Technical University of Athens, Greece
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36
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Wang DC, Klatzky R, Wu B, Weller G, Sampson AR, Stetten GD. Fully automated common carotid artery and internal jugular vein identification and tracking using B-mode ultrasound. IEEE Trans Biomed Eng 2009; 56:1691-9. [PMID: 19272982 DOI: 10.1109/tbme.2009.2015576] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
We describe a fully automated ultrasound analysis system that tracks and identifies the common carotid artery (CCA) and the internal jugular vein (IJV). Our goal is to prevent inadvertent damage to the CCA when targeting the IJV for catheterization. The automated system starts by identifying and fitting ellipses to all the regions that look like major arteries or veins throughout each B-mode ultrasound image frame. The spokes ellipse algorithm described in this paper tracks these putative vessels and calculates their characteristics, which are then weighted and summed to identify the vessels. The optimum subset of characteristics and their weights were determined from a training set of 38 subjects, whose necks were scanned with a portable 10 MHz ultrasound system at 10 frames per second. Stepwise linear discriminant analysis (LDA) narrowed the characteristics to the five that best distinguish between the CCA and IJV. A paired version of Fisher's LDA was used to calculate the weights for each of the five parameters. Leave-one-out validation studies showed that the system could track and identify the CCA and IJV with 100% accuracy in this dataset.
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Affiliation(s)
- David C Wang
- University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.
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37
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Chiu B, Beletsky V, Spence JD, Parraga G, Fenster A. Analysis of carotid lumen surface morphology using three-dimensional ultrasound imaging. Phys Med Biol 2009; 54:1149-67. [DOI: 10.1088/0031-9155/54/5/004] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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38
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Armato SG, van Ginneken B. Anniversary Paper: Image processing and manipulation through the pages ofMedical Physics. Med Phys 2008; 35:4488-500. [DOI: 10.1118/1.2977537] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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39
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Samsonov D, Elsaesser A, Edwards A, Thomas HM, Morfill GE. High speed laser tomography system. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2008; 79:035102. [PMID: 18377040 DOI: 10.1063/1.2885683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
A high speed laser tomography system was developed capable of acquiring three-dimensional (3D) images of optically thin clouds of moving micron-sized particles. It operates by parallel-shifting an illuminating laser sheet with a pair of galvanometer-driven mirrors and synchronously recording two-dimensional (2D) images of thin slices of the imaged volume. The maximum scanning speed achieved was 120,000 slices/s, sequences of 24 volume scans (up to 256 slices each) have been obtained. The 2D slices were stacked to form 3D images of the volume, then the positions of the particles were identified and followed in the consecutive scans. The system was used to image a complex plasma with particles moving at speeds up to cm/s.
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Affiliation(s)
- D Samsonov
- Department of Electrical Engineering and Electronics, University of Liverpool, Brownlow Hill, L69 3GJ Liverpool, United Kingdom
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40
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Golemati S, Stoitsis J, Sifakis EG, Balkizas T, Nikita KS. Using the Hough transform to segment ultrasound images of longitudinal and transverse sections of the carotid artery. ULTRASOUND IN MEDICINE & BIOLOGY 2007; 33:1918-32. [PMID: 17651891 DOI: 10.1016/j.ultrasmedbio.2007.05.021] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2006] [Revised: 05/22/2007] [Accepted: 05/29/2007] [Indexed: 05/16/2023]
Abstract
Automatic segmentation of the arterial lumen from ultrasound images is an important task in clinical diagnosis. In this paper, the Hough transform (HT) was used to automatically extract straight lines and circles from sequences of B-mode ultrasound images of longitudinal and transverse sections, respectively, of the carotid artery. In 10 normal subjects, the specificity and accuracy of HT-based segmentation were on average higher than 0.96 for both sections, whereas the sensitivity was higher than 0.96 in longitudinal and higher than 0.82 in transverse sections. The intima-media thickness (IMT) was also estimated from images of longitudinal sections; the corresponding validation parameters were generally higher than 0.90. To further validate the results, arterial distension waveforms (ADW) were estimated from sequences of images using the HT technique as well as motion analysis using block matching (BM). In longitudinal sections, diastolic and systolic diameters and relative diameter changes using HT and BM were not significantly different. In transverse sections, diastolic and systolic diameters were significantly lower using the HT technique; the differences were <7%. Relative diameter changes in transverse sections were not significantly different from BM-estimated ones. The HT technique was also applied to four subjects with atherosclerosis, in which sensitivity, specificity and accuracy were comparable to those of normal subjects; the low values of sensitivity in transverse sections may reflect departure from the circular model because of the presence of plaque. In conclusion, the HT technique provides a reliable way to segment ultrasound images of the carotid artery and can be used in clinical practice to estimate indices of arterial wall physiology, such as the IMT and the ADW.
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Affiliation(s)
- Spyretta Golemati
- Biomedical Simulations and Imaging Laboratory, School of Electrical and Computer Engineering, National Technical University of Athens, Athens, Greece
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41
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Loizou CP, Pattichis CS, Pantziaris M, Nicolaides A. An Integrated System for the Segmentation of Atherosclerotic Carotid Plaque. ACTA ACUST UNITED AC 2007; 11:661-7. [DOI: 10.1109/titb.2006.890019] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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42
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Nillesen MM, Lopata RGP, Gerrits IH, Kapusta L, Huisman HJ, Thijssen JM, de Korte CL. Segmentation of the heart muscle in 3-D pediatric echocardiographic images. ULTRASOUND IN MEDICINE & BIOLOGY 2007; 33:1453-62. [PMID: 17574727 DOI: 10.1016/j.ultrasmedbio.2007.04.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2006] [Revised: 02/21/2007] [Accepted: 04/13/2007] [Indexed: 05/15/2023]
Abstract
This study aimed to show segmentation of the heart muscle in pediatric echocardiographic images as a preprocessing step for tissue analysis. Transthoracic image sequences (2-D and 3-D volume data, both derived in radiofrequency format, directly after beam forming) were registered in real time from four healthy children over three heart cycles. Three preprocessing methods, based on adaptive filtering, were used to reduce the speckle noise for optimizing the distinction between blood and myocardium, while preserving the sharpness of edges between anatomical structures. The filtering kernel size was linked to the local speckle size and the speckle noise characteristics were considered to define the optimal filter in one of the methods. The filtered 2-D images were thresholded automatically as a first step of segmentation of the endocardial wall. The final segmentation step was achieved by applying a deformable contour algorithm. This segmentation of each 2-D image of the 3-D+time (i.e., 4-D) datasets was related to that of the neighboring images in both time and space. By thus incorporating spatial and temporal information of 3-D ultrasound image sequences, an automated method using image statistics was developed to perform 3-D segmentation of the heart muscle.
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Affiliation(s)
- Maartje M Nillesen
- Clinical Physics Laboratory, Department of Pediatrics, Children's Heart Centre, and Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands.
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43
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Guerrero J, Salcudean SE, McEwen JA, Masri BA, Nicolaou S. Real-time vessel segmentation and tracking for ultrasound imaging applications. IEEE TRANSACTIONS ON MEDICAL IMAGING 2007; 26:1079-90. [PMID: 17695128 DOI: 10.1109/tmi.2007.899180] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
A method for vessel segmentation and tracking in ultrasound images using Kalman filters is presented. A modified Star-Kalman algorithm is used to determine vessel contours and ellipse parameters using an extended Kalman filter with an elliptical model. The parameters can be used to easily calculate the transverse vessel area which is of clinical use. A temporal Kalman filter is used for tracking the vessel center over several frames, using location measurements from a handheld sensorized ultrasound probe. The segmentation and tracking have been implemented in real-time and validated using simulated ultrasound data with known features and real data, for which expert segmentation was performed. Results indicate that mean errors between segmented contours and expert tracings are on the order of 1%-2% of the maximum feature dimension, and that the transverse cross-sectional vessel area as computed from estimated ellipse parameters a, b as determined by our algorithm is within 10% of that determined by experts. The location of the vessel center was tracked accurately for a range of speeds from 1.4 to 11.2 mm/s.
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Affiliation(s)
- Julian Guerrero
- Department of Electrical and Computer Engineering, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
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44
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Lind BL, Fagertun J, Wilhjelm JE, Jensen MS, Sillesen H. 3D reconstruction of carotid atherosclerotic plaque: comparison between spatial compound ultrasound models and anatomical models. ULTRASOUND IN MEDICINE & BIOLOGY 2007; 33:1064-74. [PMID: 17478031 DOI: 10.1016/j.ultrasmedbio.2007.01.011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2006] [Revised: 01/08/2007] [Accepted: 01/08/2007] [Indexed: 05/15/2023]
Abstract
This study deals with the creation of 3D models that can work as a tool for discriminating between tissue and background in the development of tissue classification methods. Ten formalin-fixed atherosclerotic carotid plaques removed by endarterectomy were scanned with 3D multi-angle spatial compound ultrasound (US) and subsequently sliced and photographed to produce a 3D anatomical data set. Outlines in the ultrasound data were found by means of active contours and combined into 10 3D ultrasound models. The plaque regions of the anatomical photographs were outlined manually and then combined into 10 3D anatomical models. The volumes of the anatomical models correlated with the volume found by a water displacement method (r = 0.95), except for an offset. The models were compared in three ways. Visual inspection showed quite good agreement between the models. The volumes of the ultrasound models correlated with the volumes of the anatomical models (r = 0.93), again with an offset. Finally, the overlap between the anatomical models and the ultrasound models showed, on average, that the intersection comprised 90%(vol) of the anatomical models and 73%(vol) of the ultrasound models.
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Affiliation(s)
- Bo L Lind
- Center for Arteriosclerosis Detection with Ultrasound, Ørsted-DTU, Technical University of Denmark, Kgs. Lyngby, Denmark
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45
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Landry A, Ainsworth C, Blake C, Spence JD, Fenster A. Manual planimetric measurement of carotid plaque volume using three-dimensional ultrasound imaging. Med Phys 2007; 34:1496-505. [PMID: 17500480 DOI: 10.1118/1.2715487] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
We investigated the utility of three manual planimetric methods to quantify carotid plaque volume. A single observer measured 15 individual plaques from 15 three-dimensional (3D) ultrasound (3D US) images of patients ten times each using three different planimetric approaches. Individual plaque volumes were measured (range: 32.6-597.1 mm3) using a standard planimetric approach (M1) whereby a plaque end was identified and sequential contours were measured. The same plaques were measured using a second approach (M2), whereby plaque ends were first identified and the 3D US image of the plaque was then subdivided into equal intervals. A third method (M3) was used to measure total plaque burden (range: 165.1-1080.0 mm3) in a region (+/- 1.5 cm) relative to the carotid bifurcation. M1 systematically underestimated individual plaque volume compared to M2 (V2 = V1 + 14.0 mm3, r = 0.99, p = 0.006) due to a difference in the mean plaque length measured. Coefficients of variance (CV) for M1 and M2 decrease with increasing plaque volume, with M2 results less than M1. Root mean square difference between experimental and theoretical CV for M2 was 3.2%. The standard deviation in the identification of the transverse location of the carotid bifurcation was 0.56 mm. CVs for plaque burden measured using M3 ranged from 1.2% to 7.6% and were less than CVs determined for individual plaque volumes of the same volume. The utility of M3 was demonstrated by measuring carotid plaque burden and volume change over a period of 3 months in three patients. In conclusion, M2 was determined to be a more superior measurement technique than M1 to measure individual plaque volume. Furthermore, we demonstrated the utility of M3 to quantify regional plaque burden and to quantify change in plaque volume.
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Affiliation(s)
- Anthony Landry
- Imaging Research Laboratories, Robarts Research Institute, London, Ontario N6A 5K8, Canada
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46
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Song WY, Chiu B, Bauman GS, Lock M, Rodrigues G, Ash R, Lewis C, Fenster A, Battista JJ, Van Dyk J. Prostate contouring uncertainty in megavoltage computed tomography images acquired with a helical tomotherapy unit during image-guided radiation therapy. Int J Radiat Oncol Biol Phys 2006; 65:595-607. [PMID: 16690441 DOI: 10.1016/j.ijrobp.2006.01.049] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2005] [Revised: 01/30/2006] [Accepted: 01/31/2006] [Indexed: 11/23/2022]
Abstract
PURPOSE To evaluate the image-guidance capabilities of megavoltage computed tomography (MVCT), this article compares the interobserver and intraobserver contouring uncertainty in kilovoltage computed tomography (KVCT) used for radiotherapy planning with MVCT acquired with helical tomotherapy. METHODS AND MATERIALS Five prostate-cancer patients were evaluated. Each patient underwent a KVCT and an MVCT study, a total of 10 CT studies. For interobserver variability analysis, four radiation oncologists, one physicist, and two radiation therapists (seven observers in total) contoured the prostate and seminal vesicles (SV) in the 10 studies. The intraobserver variability was assessed by asking all observers to repeat the contouring of 1 patient's KVCT and MVCT studies. Quantitative analysis of contour variations was performed by use of volumes and radial distances. RESULTS The interobserver and intraobserver contouring uncertainty was larger in MVCT compared with KVCT. Observers consistently segmented larger volumes on MVCT where the ratio of average prostate and SV volumes was 1.1 and 1.2, respectively. On average (interobserver and intraobserver), the local delineation variability, in terms of standard deviations [Deltasigma = radical(sigma2MVCT-sigma2KVCT)], increased by 0.32 cm from KVCT to MVCT. CONCLUSIONS Although MVCT was inferior to KVCT for prostate delineation, the application of MVCT in prostate radiotherapy remains useful.
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Affiliation(s)
- William Y Song
- Radiation Treatment Program, London Regional Cancer Program, London Health Sciences Centre, London, Ontario, Canada
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47
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Landry A, Spence JD, Fenster A. Quantification of carotid plaque volume measurements using 3D ultrasound imaging. ULTRASOUND IN MEDICINE & BIOLOGY 2005; 31:751-62. [PMID: 15936491 DOI: 10.1016/j.ultrasmedbio.2005.02.011] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2004] [Revised: 02/08/2005] [Accepted: 02/17/2005] [Indexed: 05/02/2023]
Abstract
An accurate and reliable technique used to quantify carotid plaque volume has practical importance in research and patient management. In this study, we develop and investigate a theoretical description of carotid plaque volume measurements made using three-dimensional (3D) ultrasound (US) images and compare it with experimental results. Multiple observers measured 48 3D US patient images of carotid plaque (13.2 to 544.0 mm(3)) by manual planimetry. Coefficients of variation in the measurement of plaque volume were found to decrease with increasing plaque size for both inter- (90.8 to 3.9%) and intraobserver (70.2 to 3.1%) measurements. Plaque volume measurement variability was found to increase with interslice distance (ISD), while the relative measurement accuracy remained constant for ISDs between 1.0 and 3.0 mm and then decreased. Root-mean-square (RMS) difference between our theoretical description of plaque volume measurement variance and the experimental results was 5.7%. Thus, our results support the clinical utility of measuring carotid plaque volume by manual planimetry noninvasively using 3D US.
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Affiliation(s)
- Anthony Landry
- Imaging Research Laboratories, Robarts Research Institute, London, Ontario, Canada
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48
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Chiu B, Freeman GH, Salama MMA, Fenster A. Prostate segmentation algorithm using dyadic wavelet transform and discrete dynamic contour. Phys Med Biol 2005; 49:4943-60. [PMID: 15584529 DOI: 10.1088/0031-9155/49/21/007] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Knowing the location and the volume of the prostate is important for ultrasound-guided prostate brachytherapy, a commonly used prostate cancer treatment method. The prostate boundary must be segmented before a dose plan can be obtained. However, manual segmentation is arduous and time consuming. This paper introduces a semi-automatic segmentation algorithm based on the dyadic wavelet transform (DWT) and the discrete dynamic contour (DDC). A spline interpolation method is used to determine the initial contour based on four user-defined initial points. The DDC model then refines the initial contour based on the approximate coefficients and the wavelet coefficients generated using the DWT. The DDC model is executed under two settings. The coefficients used in these two settings are derived using smoothing functions with different sizes. A selection rule is used to choose the best contour based on the contours produced in these two settings. The accuracy of the final contour produced by the proposed algorithm is evaluated by comparing it with the manual contour outlined by an expert observer. A total of 114 2D TRUS images taken for six different patients scheduled for brachytherapy were segmented using the proposed algorithm. The average difference between the contour segmented using the proposed algorithm and the manually outlined contour is less than 3 pixels.
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Affiliation(s)
- Bernard Chiu
- Department of Electrical and Computer Engineering, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada.
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49
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Abstract
BACKGROUND AND PURPOSE Measurement of carotid plaque volume and its progression are important tools for research and patient management. In this study, we investigate the observer variability in the measurement of plaque volume as determined by 3-dimensional (3D) ultrasound (US). We also investigate the effect of interslice distances (ISD) and repeated 3D US scans on measurement variability. Materials and Methods Forty 3D US patient images of plaques (range, 37.43 to 604.1 mm3) were measured by manual planimetry. We applied ANOVA to determine plaque volume measurement variability and reliability. Plaque volumes were measured with 9 ISDs to determine the effect of ISD on measurement variability. Additional plaque volumes were also measured from multiple 3D US scans to investigate repeated scan acquisition variability. Results Intraobserver and interobserver measurement reliabilities were 94% and 93.2%, respectively. Plaque volume measurement variability decreased with increasing plaque volume (range, 27.1% to 2.2%). Measurement precision was constant for ISDs between 1.0 and 3.0 mm, whereas plaque volume measurement variability increased with ISD. Repeated 3D US scan measurements were not different from single-scan measurements (P=0.867). Conclusions The coefficient of variation in the measurement of plaque volume decreased with plaque size. The volumetric change that must be observed to establish with 95% confidence that a plaque has undergone change is approximately 20% to 35% for plaques <100 mm3 and approximately 10% to 20% for plaques >100 mm3. Measurement precision was unchanged for ISDs <3.0 mm, whereas measurement variability increased with ISD. Repeated 3D US scans did not affect plaque volume measurement variability.
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Affiliation(s)
- Anthony Landry
- Imaging Research Laboratories, Robarts Research Institute, London, Ontario, Canada
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50
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Glor FP, Ariff B, Crowe LA, Hughes AD, Cheong PL, Thom SAM, Verdonck PR, Firmin DN, Barratt DC, Xu XY. Carotid geometry reconstruction: a comparison between MRI and ultrasound. Med Phys 2003; 30:3251-61. [PMID: 14713092 DOI: 10.1118/1.1628412] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
Image-based Computational Fluid Dynamics (CFD) has become a popular tool for the prediction of in vivo flow profiles and hemodynamic wall parameters. Currently, Magnetic Resonance Imaging (MRI) is most widely used for in vivo geometry acquisition. For superficial arteries such as the carotids and the femoral artery, three-dimensional (3-D) extravascular ultrasound (3-DUS) could be a cost-effective alternative to MRI. In this study, nine healthy subjects were scanned both with MRI and 3-DUS. The reconstructed carotid artery geometries for each subject were compared by evaluating cross-sectional areas, centerlines, and carotid nonplanarity. Lumen areas agreed very well between the two different acquisition techniques, whereas centerlines and nonplanarity parameters showed measurable disagreement, possibly due to the different neck and head positions adopted for 3-DUS versus MRI. With the current level of agreement achieved, 3-DUS has the potential to become an inexpensive and fast alternative to MRI for image-based CFD modeling of superficial arteries.
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Affiliation(s)
- F P Glor
- Department of Chemical Engineering & Chemical Technology, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom.
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