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Xiong T, Cai J, Zhou F, Liu B, Zhang J, Wu Q. An end-to-end deep convolutional neural network-based dose engine for parotid gland cancer seed implant brachytherapy. Med Phys 2024; 51:6365-6377. [PMID: 38753975 DOI: 10.1002/mp.17123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 04/12/2024] [Accepted: 04/29/2024] [Indexed: 05/18/2024] Open
Abstract
BACKGROUND Seed implant brachytherapy (SIBT) is a promising treatment modality for parotid gland cancers (PGCs). However, the current clinical standard dose calculation method based on the American Association of Physicists in Medicine (AAPM) Task Group 43 (TG-43) Report oversimplifies patient anatomy as a homogeneous water phantom medium, leading to significant dose calculation errors due to heterogeneity surrounding the parotid gland. Monte Carlo Simulation (MCS) can yield accurate dose distributions but the long computation time hinders its wide application in clinical practice. PURPOSE This paper aims to develop an end-to-end deep convolutional neural network-based dose engine (DCNN-DE) to achieve fast and accurate dose calculation for PGC SIBT. METHODS A DCNN model was trained using the patient's CT images and TG-43-based dose maps as inputs, with the corresponding MCS-based dose maps as the ground truth. The DCNN model was enhanced based on our previously proposed model by incorporating attention gates (AGs) and large kernel convolutions. Training and evaluation of the model were performed using a dataset comprising 188 PGC I-125 SIBT patient cases, and its transferability was tested on an additional 16 non-PGC head and neck cancers (HNCs) I-125 SIBT patient cases. Comparison studies were conducted to validate the superiority of the enhanced model over the original one and compare their overall performance. RESULTS On the PGC testing dataset, the DCNN-DE demonstrated the ability to generate accurate dose maps, with percentage absolute errors (PAEs) of 0.67% ± 0.47% for clinical target volume (CTV) D90 and 1.04% ± 1.33% for skin D0.1cc. The comparison studies revealed that incorporating AGs and large kernel convolutions resulted in 8.2% (p < 0.001) and 3.1% (p < 0.001) accuracy improvement, respectively, as measured by dose mean absolute error. On the non-PGC HNC dataset, the DCNN-DE exhibited good transferability, achieving a CTV D90 PAE of 1.88% ± 1.73%. The DCNN-DE can generate a dose map in less than 10 ms. CONCLUSIONS We have developed and validated an end-to-end DCNN-DE for PGC SIBT. The proposed DCNN-DE enables fast and accurate dose calculation, making it suitable for application in the plan optimization and evaluation process of PGC SIBT.
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Affiliation(s)
- Tianyu Xiong
- Image Processing Center, Beihang University, Beijing, People's Republic of China
- Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong SAR, People's Republic of China
| | - Jing Cai
- Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong SAR, People's Republic of China
| | - Fugen Zhou
- Image Processing Center, Beihang University, Beijing, People's Republic of China
| | - Bo Liu
- Image Processing Center, Beihang University, Beijing, People's Republic of China
| | - Jie Zhang
- Department of Oral and Maxillofacial Surgery, Peking University School of Stomatology, Beijing, People's Republic of China
| | - Qiuwen Wu
- Department of Radiation Oncology, Duke University Medical Center, Durham, North Carolina, USA
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Pells S, Cullen DM, Deidda D, Denis-Bacelar AM, Fenwick A, Ferreira KM, Hamilton D, Heetun W, Julyan P, Needham G, Pietras B, Price E, Scuffham J, Tipping J, Robinson AP. Quantitative validation of Monte Carlo SPECT simulation: application to a Mediso AnyScan GATE simulation. EJNMMI Phys 2023; 10:60. [PMID: 37777689 PMCID: PMC10542438 DOI: 10.1186/s40658-023-00581-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Accepted: 09/15/2023] [Indexed: 10/02/2023] Open
Abstract
BACKGROUND Monte Carlo (MC) simulations are used in nuclear medicine imaging as they provide unparalleled insight into processes that are not directly experimentally measurable, such as scatter and attenuation in an acquisition. Whilst MC is often used to provide a 'ground-truth', this is only the case if the simulation is fully validated against experimental data. This work presents a quantitative validation for a MC simulation of a single-photon emission computed tomography (SPECT) system. METHODS An MC simulation model of the Mediso AnyScan SCP SPECT system installed at the UK National Physical Laboratory was developed in the GATE (Geant4 Application for Tomographic Emission) toolkit. Components of the detector head and two collimator configurations were modelled according to technical specifications and physical measurements. Experimental detection efficiency measurements were collected for a range of energies, permitting an energy-dependent intrinsic camera efficiency correction function to be determined and applied to the simulation on an event-by-event basis. Experimental data were collected in a range of geometries with [Formula: see text]Tc for comparison to simulation. The procedure was then repeated with [Formula: see text]Lu to determine how the validation extended to another isotope and set of collimators. RESULTS The simulation's spatial resolution, sensitivity, energy spectra and the projection images were compared with experimental measurements. The simulation and experimental uncertainties were determined and propagated to all calculations, permitting the quantitative agreement between simulated and experimental SPECT acquisitions to be determined. Statistical agreement was seen in sinograms and projection images of both [Formula: see text]Tc and [Formula: see text]Lu data. Average simulated and experimental sensitivity ratios of ([Formula: see text]) were seen for emission and scatter windows of [Formula: see text]Tc, and ([Formula: see text]) and ([Formula: see text]) for the 113 and 208 keV emissions of [Formula: see text]Lu, respectively. CONCLUSIONS MC simulations will always be an approximation of a physical system and the level of agreement should be assessed. A validation method is presented to quantify the level of agreement between a simulation model and a physical SPECT system.
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Affiliation(s)
- Sophia Pells
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK.
- National Physical Laboratory, Teddington, UK.
- Department of Radiology, UMass Chan Medical School, Worcester, MA, USA.
| | - David M Cullen
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK
| | | | | | | | | | | | | | - Peter Julyan
- The Christie NHS Foundation Trust, Manchester, UK
| | - George Needham
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK
- The Christie NHS Foundation Trust, Manchester, UK
| | - Ben Pietras
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK
| | - Emlyn Price
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK
| | - James Scuffham
- National Physical Laboratory, Teddington, UK
- Royal Surrey County Hospital, Guildford, UK
| | - Jill Tipping
- The Christie NHS Foundation Trust, Manchester, UK
| | - Andrew P Robinson
- Department of Physics and Astronomy, The University of Manchester, Manchester, UK
- National Physical Laboratory, Teddington, UK
- The Christie NHS Foundation Trust, Manchester, UK
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Sarrut D, Etxebeste A, Krah N, Létang JM. Modeling complex particles phase space with GAN for Monte Carlo SPECT simulations: a proof of concept. Phys Med Biol 2021; 66:055014. [PMID: 33477121 DOI: 10.1088/1361-6560/abde9a] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
A method is proposed to model by a generative adversarial network the distribution of particles exiting a patient during Monte Carlo simulation of emission tomography imaging devices. The resulting compact neural network is then able to generate particles exiting the patient, going towards the detectors, avoiding costly particle tracking within the patient. As a proof of concept, the method is evaluated for single photon emission computed tomography (SPECT) imaging and combined with another neural network modeling the detector response function (ARF-nn). A complete rotating SPECT acquisition can be simulated with reduced computation time compared to conventional Monte Carlo simulation. It also allows the user to perform simulations with several imaging systems or parameters, which is useful for imaging system design.
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Affiliation(s)
- D Sarrut
- Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1, Centre Léon Bérard 69373, France
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Badal A, Badano A. Reducing the Memory Requirements of High Resolution Voxel Phantoms by Means of a Binary Tree Data Structure. IEEE TRANSACTIONS ON RADIATION AND PLASMA MEDICAL SCIENCES 2019. [DOI: 10.1109/trpms.2018.2852634] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Teixeira M, Batista D, Braz D, da Rosa L. Monte Carlo simulation of Novalis Classic 6 MV accelerator using phase space generation in GATE/Geant4 code. PROGRESS IN NUCLEAR ENERGY 2019. [DOI: 10.1016/j.pnucene.2018.09.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Benhalouche S, Bert J, Boussion N, Autret A, Pradier O, Visvikis D. GATE Monte-Carlo Simulation of an MV-CBCT Flat Panel for Synergistic Imaging and Dosimetric Applications in Radiotherapy. IEEE TRANSACTIONS ON RADIATION AND PLASMA MEDICAL SCIENCES 2017. [DOI: 10.1109/trpms.2017.2718545] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Wang B, van Roosmalen J, Piët L, van Schie MA, Beekman FJ, Goorden MC. Voxelized ray-tracing simulation dedicated to multi-pinhole molecular breast tomosynthesis. Biomed Phys Eng Express 2017. [DOI: 10.1088/2057-1976/aa8012] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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Lee H, Yoon C, Cho S, Park SH, Lee W. The adaptation method in the Monte Carlo simulation for computed tomography. NUCLEAR ENGINEERING AND TECHNOLOGY 2015. [DOI: 10.1016/j.net.2015.01.010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Sarrut D, Bardiès M, Boussion N, Freud N, Jan S, Létang JM, Loudos G, Maigne L, Marcatili S, Mauxion T, Papadimitroulas P, Perrot Y, Pietrzyk U, Robert C, Schaart DR, Visvikis D, Buvat I. A review of the use and potential of the GATE Monte Carlo simulation code for radiation therapy and dosimetry applications. Med Phys 2015; 41:064301. [PMID: 24877844 DOI: 10.1118/1.4871617] [Citation(s) in RCA: 242] [Impact Index Per Article: 24.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
In this paper, the authors' review the applicability of the open-source GATE Monte Carlo simulation platform based on the GEANT4 toolkit for radiation therapy and dosimetry applications. The many applications of GATE for state-of-the-art radiotherapy simulations are described including external beam radiotherapy, brachytherapy, intraoperative radiotherapy, hadrontherapy, molecular radiotherapy, and in vivo dose monitoring. Investigations that have been performed using GEANT4 only are also mentioned to illustrate the potential of GATE. The very practical feature of GATE making it easy to model both a treatment and an imaging acquisition within the same framework is emphasized. The computational times associated with several applications are provided to illustrate the practical feasibility of the simulations using current computing facilities.
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Affiliation(s)
- David Sarrut
- Université de Lyon, CREATIS; CNRS UMR5220; Inserm U1044; INSA-Lyon; Université Lyon 1; Centre Léon Bérard, France
| | - Manuel Bardiès
- Inserm, UMR1037 CRCT, F-31000 Toulouse, France and Université Toulouse III-Paul Sabatier, UMR1037 CRCT, F-31000 Toulouse, France
| | | | - Nicolas Freud
- Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1, Centre Léon Bérard, 69008 Lyon, France
| | | | - Jean-Michel Létang
- Université de Lyon, CREATIS, CNRS UMR5220, Inserm U1044, INSA-Lyon, Université Lyon 1, Centre Léon Bérard, 69008 Lyon, France
| | - George Loudos
- Department of Medical Instruments Technology, Technological Educational Institute of Athens, Athens 12210, Greece
| | - Lydia Maigne
- UMR 6533 CNRS/IN2P3, Université Blaise Pascal, 63171 Aubière, France
| | - Sara Marcatili
- Inserm, UMR1037 CRCT, F-31000 Toulouse, France and Université Toulouse III-Paul Sabatier, UMR1037 CRCT, F-31000 Toulouse, France
| | - Thibault Mauxion
- Inserm, UMR1037 CRCT, F-31000 Toulouse, France and Université Toulouse III-Paul Sabatier, UMR1037 CRCT, F-31000 Toulouse, France
| | - Panagiotis Papadimitroulas
- Department of Biomedical Engineering, Technological Educational Institute of Athens, 12210, Athens, Greece
| | - Yann Perrot
- UMR 6533 CNRS/IN2P3, Université Blaise Pascal, 63171 Aubière, France
| | - Uwe Pietrzyk
- Institut für Neurowissenschaften und Medizin, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany and Fachbereich für Mathematik und Naturwissenschaften, Bergische Universität Wuppertal, 42097 Wuppertal, Germany
| | - Charlotte Robert
- IMNC, UMR 8165 CNRS, Universités Paris 7 et Paris 11, Orsay 91406, France
| | - Dennis R Schaart
- Delft University of Technology, Faculty of Applied Sciences, Radiation Science and Technology Department, Delft Mekelweg 15, 2629 JB Delft, The Netherlands
| | | | - Irène Buvat
- IMNC, UMR 8165 CNRS, Universités Paris 7 et Paris 11, 91406 Orsay, France and CEA/DSV/I2BM/SHFJ, 91400 Orsay, France
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Yuan J, Chen Q, Brindle J, Zheng Y, Lo S, Sohn J, Wessels B. Investigation of Nonuniform Dose Voxel Geometry in Monte Carlo Calculations. Technol Cancer Res Treat 2014; 14:419-27. [DOI: 10.1177/1533034614547459] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2014] [Accepted: 05/20/2014] [Indexed: 11/17/2022] Open
Affiliation(s)
- Jiankui Yuan
- University Hospitals, Case Medical Center, Cleveland, OH, USA
| | - Quan Chen
- Department of Radiation Oncology, University of Virginia, Charlottesville, VA, USA
| | - James Brindle
- University Hospitals, Case Medical Center, Cleveland, OH, USA
| | - Yiran Zheng
- University Hospitals, Case Medical Center, Cleveland, OH, USA
| | - Simon Lo
- University Hospitals, Case Medical Center, Cleveland, OH, USA
| | - Jason Sohn
- University Hospitals, Case Medical Center, Cleveland, OH, USA
| | - Barry Wessels
- University Hospitals, Case Medical Center, Cleveland, OH, USA
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Perrot Y, Degoul F, Auzeloux P, Bonnet M, Cachin F, Chezal JM, Donnarieix D, Labarre P, Moins N, Papon J, Rbah-Vidal L, Vidal A, Miot-Noirault E, Maigne L. Internal dosimetry through GATE simulations of preclinical radiotherapy using a melanin-targeting ligand. Phys Med Biol 2014; 59:2183-98. [PMID: 24710744 DOI: 10.1088/0031-9155/59/9/2183] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Mauxion T, Barbet J, Suhard J, Pouget JP, Poirot M, Bardiès M. Improved realism of hybrid mouse models may not be sufficient to generate reference dosimetric data. Med Phys 2013; 40:052501. [DOI: 10.1118/1.4800801] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Benhalouche S, Visvikis D, Le Maitre A, Pradier O, Boussion N. Evaluation of clinical IMRT treatment planning using the GATE Monte Carlo simulation platform for absolute and relative dose calculations. Med Phys 2013; 40:021711. [DOI: 10.1118/1.4774358] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
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Grevillot L, Frisson T, Maneval D, Zahra N, Badel JN, Sarrut D. Simulation of a 6 MV Elekta Precise Linac photon beam using GATE/GEANT4. Phys Med Biol 2011; 56:903-18. [DOI: 10.1088/0031-9155/56/4/002] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Jan S, Benoit D, Becheva E, Carlier T, Cassol F, Descourt P, Frisson T, Grevillot L, Guigues L, Maigne L, Morel C, Perrot Y, Rehfeld N, Sarrut D, Schaart DR, Stute S, Pietrzyk U, Visvikis D, Zahra N, Buvat I. GATE V6: a major enhancement of the GATE simulation platform enabling modelling of CT and radiotherapy. Phys Med Biol 2011; 56:881-901. [DOI: 10.1088/0031-9155/56/4/001] [Citation(s) in RCA: 548] [Impact Index Per Article: 39.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Zahra N, Frisson T, Grevillot L, Lautesse P, Sarrut D. Influence of Geant4 parameters on dose distribution and computation time for carbon ion therapy simulation. Phys Med 2010; 26:202-8. [DOI: 10.1016/j.ejmp.2009.12.001] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/11/2009] [Revised: 11/17/2009] [Accepted: 12/23/2009] [Indexed: 11/16/2022] Open
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Rehfeld NS, Stute S, Apostolakis J, Soret M, Buvat I. Introducing improved voxel navigation and fictitious interaction tracking in GATE for enhanced efficiency. Phys Med Biol 2009; 54:2163-78. [DOI: 10.1088/0031-9155/54/7/021] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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