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Xuan Z, Ma T, Qin Y, Guo Y. Role of Ultrasound Imaging in the Prediction of TRIM67 in Brain Metastases From Breast Cancer. Front Neurol 2022; 13:889106. [PMID: 35795796 PMCID: PMC9251422 DOI: 10.3389/fneur.2022.889106] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Accepted: 05/16/2022] [Indexed: 12/13/2022] Open
Abstract
Objectives Ultrasound (US) imaging is a relatively novel strategy to monitor the activity of the blood–brain barrier, which can facilitate the diagnosis and treatment of neurovascular-related metastatic tumors. The purpose of this study was to investigate the clinical significance of applying a combination of US imaging outcomes and the associated genes. This was performed to construct line drawings to facilitate the prediction of brain metastases arising from breast cancer. Methods The RNA transcript data from The Cancer Genome Atlas (TCGA) database was obtained for breast cancer, and the differentially expressed genes (DEGs) associated with tumor and brain tumor metastases were identified. Subsequently, key genes associated with survival prognosis were subsequently identified from the DEGs. Results Tripartite motif-containing protein 67 (TRIM67) was identified and the differential; in addition, the survival analyses of the TCGA database revealed that it was associated with brain tumor metastases and overall survival prognosis. Applying independent clinical cohort data, US-related features (microcalcification and lymph node metastasis) were associated with breast cancer tumor metastasis. Furthermore, ultrasonographic findings of microcalcifications showed correlations with TRIM67 expression. The study results revealed that six variables [stage, TRIM67, tumor size, regional lymph node staging (N), age, and HER2 status] were suitable predictors of tumor metastasis by applying support vector machine–recursive feature elimination. Among these, US-predicted tumor size correlated with tumor size classification, whereas US-predicted lymph node metastasis correlated with tumor N classification. The TRIM67 upregulation was accompanied by upregulation of the integrated breast cancer pathway; however, it leads to the downregulation of the miRNA targets in ECM and membrane receptors and the miRNAs involved in DNA damage response pathways. Conclusions The TRIM67 is a risk factor associated with brain metastases from breast cancer and it is considered a prognostic survival factor. The nomogram constructed from six variables—stage, TRIM67, tumor size, N, age, HER2 status—is an appropriate predictor to estimate the occurrence of breast cancer metastasis.
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Zhang X, Zbijewski W, Huang Y, Uneri A, Jones CK, Lo SFL, Witham TF, Luciano M, Anderson WS, Helm PA, Siewerdsen JH. Intraoperative cone-beam and slot-beam CT: 3D image quality and dose with a slot collimator on the O-arm imaging system. Med Phys 2021; 48:6800-6809. [PMID: 34519364 PMCID: PMC10174643 DOI: 10.1002/mp.15221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 08/09/2021] [Accepted: 08/31/2021] [Indexed: 11/11/2022] Open
Abstract
PURPOSE To characterize the 3D imaging performance and radiation dose for a prototype slot-beam configuration on an intraoperative O-arm™ Surgical Imaging System (Medtronic Inc., Littleton, MA) and identify potential improvements in soft-tissue image quality for surgical interventions. METHODS A slot collimator was integrated with the O-arm™ system for slot-beam axial CT. The collimator can be automatically actuated to provide 1.2° slot-beam longitudinal collimation. Cone-beam and slot-beam configurations were investigated with and without an antiscatter grid (12:1 grid ratio, 60 lines/cm). Dose, scatter, image noise, and soft-tissue contrast resolution were evaluated in quantitative phantoms for head and body configurations over a range of exposure levels (beam energy and mAs), with reconstruction performed via filtered-backprojection. Qualitative imaging performance across various anatomical sites and imaging tasks was assessed with anthropomorphic head, abdomen, and pelvis phantoms. RESULTS The dose for a slot-beam scan varied from 0.02-0.06 mGy/mAs for head protocols to 0.01-0.03 mGy/mAs for body protocols, yielding dose reduction by ∼1/5 to 1/3 compared to cone-beam, owing to beam collimation and reduced x-ray scatter. The slot-beam provided an ∼6-7× reduction in scatter-to-primary ratio (SPR) compared to the cone-beam, yielding SPR ∼20-80% for head and body without the grid and ∼7-30% with the grid. Compared to cone-beam scans at equivalent dose, slot-beam images exhibited an ∼2.5× increase in soft-tissue contrast-to-noise ratio (CNR) for both grid and gridless configurations. For slot-beam scans, a further ∼10-30% improvement in CNR was achieved when the grid was removed. Slot-beam imaging could benefit certain interventional scenarios in which improved visualization of soft tissues is required within a fairly narrow longitudinal region of interest ( ± 7 mm in z )--for example, checking the completeness of tumor resection, preservation of adjacent anatomy, or detection of complications (e.g., hemorrhage). While preserving existing capabilities for fluoroscopy and cone-beam CT, slot-beam scanning could enhance the utility of intraoperative imaging and provide a useful mode for safety and validation checks in image-guided surgery. CONCLUSIONS The 3D imaging performance and dose of a prototype slot-beam CT configuration on the O-arm™ system was investigated. Substantial improvements in soft-tissue image quality and reduction in radiation dose are evident with the slot-beam configuration due to reduced x-ray scatter.
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Affiliation(s)
- Xiaoxuan Zhang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Wojciech Zbijewski
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Yixuan Huang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Ali Uneri
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Craig K Jones
- The Malone Center for Engineering in Healthcare, Johns Hopkins University, Baltimore, Maryland, USA
| | - Sheng-Fu L Lo
- Department of Neurosurgery, Johns Hopkins Medical Institute, Baltimore, Maryland, USA
| | - Timothy F Witham
- Department of Neurosurgery, Johns Hopkins Medical Institute, Baltimore, Maryland, USA
| | - Mark Luciano
- Department of Neurosurgery, Johns Hopkins Medical Institute, Baltimore, Maryland, USA
| | | | | | - Jeffrey H Siewerdsen
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, USA.,Department of Neurosurgery, Johns Hopkins Medical Institute, Baltimore, Maryland, USA
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Ghazi P. Reduction of scatter in breast CT yields improved microcalcification visibility. Phys Med Biol 2020; 65:235047. [PMID: 33274730 DOI: 10.1088/1361-6560/abae07] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The inadequate visibility of microcalcifications-small calcium deposits that cue radiologists to early stages of cancer-is a major limitation in current designs of dedicated breast computed tomography (bCT). This limitation has previously been attributed to the constituent components, spatial resolution, and utilized dose. Scattered radiation has been considered an occurrence with low-frequency impacts that can be compensated for in post-processing. We hypothesized, however, that the acquisition of scattered radiation has a far more detrimental impact on clinically relevant features than has previously been understood. Critically, acquisition of scatter leads to the reduced visibility of microcalcifications. This hypothesis was investigated and supported via mathematical derivations and simulation studies. We conducted a series of comparative studies in which four bCT systems were simulated under iso-dose and iso-resolution conditions, characterizing the dependencies of microcalcification contrast on accumulated scatter. Included among the simulated systems is a novel bCT design-narrow beam bCT (NB-bCT)-that captures nearly zero scatter. We find that current bCT systems suffer from significant levels of scatter. As validated in theory, depending on the system and size of microcalcifications, between 25% and over 70% of contrast resolution is lost due to scatter. The results in NB-bCT, however, provide evidence that by removing scatter build-up in projections, the contrast of microcalcifications in a bCT image is preserved, regardless of their size or location in the breast.
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Affiliation(s)
- Peymon Ghazi
- Malcova LLC, 3000 Falls Rd Suite 400, Baltimore, MD 21211, United States of America
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Ghazi P. A fluence modulation and scatter shielding apparatus for dedicated breast CT: Theory of operation. Med Phys 2020; 47:1590-1608. [PMID: 31955431 DOI: 10.1002/mp.14026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Revised: 01/09/2020] [Accepted: 01/10/2020] [Indexed: 01/12/2023] Open
Abstract
PURPOSE To introduce an auxiliary apparatus of fluence modulation and scatter shielding for dedicated breast computed tomography (bCT) and the corresponding patient-specific method of image acquisition. METHODS The apparatus is composed of two assemblies, referred to herein as the "Dynamic Fluence Gate" (FG) and "Scatter Shield" (SS), that work in synchrony to form a narrow beam sweeping the entire fan angle coverage of the imaging system during a projection. The apparatus, as a whole, is referred to as FG-SS. FG and SS are pre-patient and post-patient units, respectively. Each is composed of a rotating drum, on top of which are installed two sheets of high x-ray attenuating material, a sensory system, and the constituent robotics. The sheets of each unit are positioned such that an opening - a window Fluence Modulation and Scatter Shielding is formed between them. The rotations of the drums and positioning of the sheets are synchronized and adjusted such that a line of sight is created between the source, FG window, the breast, and the SS window. With line of sight achieved, the narrow beam transitions from the source to the detector. The fluence of the narrow beam during a projection depends on the size, shape, and positioning of the breast. The FG-SS method of imaging is discussed mathematically and demonstrated using computer simulations. A series of Monte Carlo simulations are conducted to evaluate the performance of the system as relates to its impact on the imager's dynamic range, dose distribution to the breast, noise inhomogeneity in reconstructed images, and scatter buildup in projections within small, medium, and large breasts composed of homogeneous medium breast tissue. RESULTS Implementation of FG-SS results in near scatter-free projections, reduction in both dose and the required dynamic range of the imager, and equalization of the quantum noise distribution in the reconstructed image. Using the disclosed design, the dynamic range was reduced by factors ranging from 1.6 to 5.5 across the range of breast sizes studied. A reduction in the acquisition of the scattered rays, varying between the factors of 6.1 (in the small breast) and 9.8 (in that large breast) was achieved and consequently, shading artifacts were suppressed. Noise in the CT image was equalized by reducing the overall spatial variation from 29% to <5% in small breast and from 45% to 14% in the large breast. An overall reduction in deposited dose to the breast was achieved - between 26% and 39% depending on the breast size. CONCLUSIONS Utilization of the FG-SS apparatus and technique was demonstrated via simulations to result in: significant reductions in dose to the breast, reductions in scatter uptake in projections, reduced required dynamic range of the imager, and homogenizing of quantum noise throughout the reconstructed image.
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Schopphoven S, Cavael P, Bock K, Fiebich M, Mäder U. Breast phantoms for 2D digital mammography with realistic anatomical structures and attenuation characteristics based on clinical images using 3D printing. Phys Med Biol 2019; 64:215005. [PMID: 31469105 DOI: 10.1088/1361-6560/ab3f6a] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The aim of this work was to develop a production process for breast phantoms for 2D digital mammography (DM) with realistic anatomical structures and attenuation characteristics based on clinical images using 3D printing. The presented production process is based on PolyJet 3D printing technology using a polypropylene like printing material. First, an attenuation calibration function for this material and the achievable lateral resolution of the printing process of about 200 µm was determined. Subsequently, to generate the digital 3D model of the breast phantom, the pixel intensities of the unprocessed clinical image that are related to the attenuation along the z-axis of the breast, were converted to corresponding phantom heights using the calibration function. To validate the process, an image of the 3D printed breast phantom was acquired on the full field digital mammography (FFDM) system used for calibration and compared with the clinical image in terms of anatomical structures and associated attenuation characteristics. The exposure parameters and image impression of the phantom were evaluated using five other FFDM systems of different manufacturers and types. Results demonstrated that the anatomical structures in the images and the attenuation characteristics of a female breast and the derived phantom agreed on the FFDM system used for calibration. The automatic exposure control segmentation, the automatically selected exposure parameters and the image postprocessing of the clinical and phantom image indicated a high level of conformity. As shown, the phantom is also suitable for other FFDM systems. In conclusion, an approach to produce anthropomorphic breast phantoms for DM offering realistic anatomical structures and attenuation characteristics based on clinical images was successfully developed. As shown, the phantom realistically simulated the original female breast. Therefore, it is expected that such phantoms are promising to support bridging the gap between physical-technical and diagnostic image quality assessment. In addition, they enable a variety of practical and scientific applications for which present technical phantoms are not suitable.
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Affiliation(s)
- Stephan Schopphoven
- Referenzzentrum Mammographie Süd West, Reference Centre for Mammography Screening Southwest Germany, Bahnhofstrasse 7, 35037 Marburg, Germany. Author to whom any correspondence should be addressed
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A new approach for detecting abnormalities in mammograms using a computer-aided windowing system based on Otsu's method. Radiol Phys Technol 2019; 12:178-184. [PMID: 30931495 DOI: 10.1007/s12194-019-00509-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Revised: 03/20/2019] [Accepted: 03/21/2019] [Indexed: 10/27/2022]
Abstract
Breast cancer is the most common cancer and the leading cause of cancer deaths in women worldwide. This study aimed to provide an automatic windowing method in mammograms, based on the principles of Otsu's thresholding function, to help radiologists more easily detect abnormalities on mammograms. A total of 322 mammographic images from the Mammographic Image Analysis Society (MIAS) database were used in the present study. The image background was removed based on Otsu's method. After selecting the threshold in the computer-aided windowing (CAW) system, the pixel values were kept larger than the threshold and displayed on a grayscale. A radiologist evaluated images randomly before and after CAW. Using CAW, the radiologist correctly diagnosed all healthy images (207 images). A total of 115 mammograms were evaluated to differentiate malignancy from benign masses. All 63 benign images were accurately diagnosed after using CAW. Moreover, of 52 malignant images, all were accurately recognized as malignant except one, which was recognized as benign. Therefore, specificity and sensitivity were significantly improved to 98% and 99.6%, respectively, and the area under the receiver operating characteristic (ROC) curve was calculated to be 0.99. The study showed that the use of CAW can potentially lead to quicker image assessment and improve the diagnostic accuracy of radiologists in differentiating between benign and malignant masses on mammograms.
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Hassan L, MacDonald CA. Coherent scatter imaging Monte Carlo simulation. J Med Imaging (Bellingham) 2016; 3:033504. [PMID: 27610397 DOI: 10.1117/1.jmi.3.3.033504] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 08/01/2016] [Indexed: 11/14/2022] Open
Abstract
Conventional mammography can suffer from poor contrast between healthy and cancerous tissues due to the small difference in attenuation properties. Coherent scatter slot scan imaging is an imaging technique which provides additional information and is compatible with conventional mammography. A Monte Carlo simulation of coherent scatter slot scan imaging was performed to assess its performance and provide system optimization. Coherent scatter could be exploited using a system similar to conventional slot scan mammography system with antiscatter grids tilted at the characteristic angle of cancerous tissues. System optimization was performed across several parameters, including source voltage, tilt angle, grid distances, grid ratio, and shielding geometry. The simulated carcinomas were detectable for tumors as small as 5 mm in diameter, so coherent scatter analysis using a wide-slot setup could be promising as an enhancement for screening mammography. Employing coherent scatter information simultaneously with conventional mammography could yield a conventional high spatial resolution image with additional coherent scatter information.
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Affiliation(s)
- Laila Hassan
- University at Albany , State University of New York, Department of Physics, 1400 Washington Avenue, Albany, New York 12222, United States
| | - Carolyn A MacDonald
- University at Albany , State University of New York, Department of Physics, 1400 Washington Avenue, Albany, New York 12222, United States
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Evaluation of the role of dynamic 64-MDCT in the characterization and work up of breast cancer. THE EGYPTIAN JOURNAL OF RADIOLOGY AND NUCLEAR MEDICINE 2015. [DOI: 10.1016/j.ejrnm.2015.02.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Bloomquist AK, Mainprize JG, Mawdsley GE, Yaffe MJ. Method of measuring NEQ as a quality control metric for digital mammography. Med Phys 2014; 41:031905. [DOI: 10.1118/1.4865175] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Feasibility Study for the Improvement of Microcalcification Visualization in Different Breast Thicknesses and Tissue Components Using a Dual-Energy Approach in Digital Mammography. J Comput Assist Tomogr 2012; 36:488-94. [DOI: 10.1097/rct.0b013e31825c83c4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Liu X, Lai CJ, Whitman GJ, Geiser WR, Shen Y, Yi Y, Shaw CC. Effects of exposure equalization on image signal-to-noise ratios in digital mammography: a simulation study with an anthropomorphic breast phantom. Med Phys 2011; 38:6489-501. [PMID: 22149832 DOI: 10.1118/1.3659709] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE The scan equalization digital mammography (SEDM) technique combines slot scanning and exposure equalization to improve low-contrast performance of digital mammography in dense tissue areas. In this study, full-field digital mammography (FFDM) images of an anthropomorphic breast phantom acquired with an anti-scatter grid at various exposure levels were superimposed to simulate SEDM images and investigate the improvement of low-contrast performance as quantified by primary signal-to-noise ratios (PSNRs). METHODS We imaged an anthropomorphic breast phantom (Gammex 169 "Rachel," Gammex RMI, Middleton, WI) at various exposure levels using a FFDM system (Senographe 2000D, GE Medical Systems, Milwaukee, WI). The exposure equalization factors were computed based on a standard FFDM image acquired in the automatic exposure control (AEC) mode. The equalized image was simulated and constructed by superimposing a selected set of FFDM images acquired at 2, 1, 1/2, 1/4, 1/8, 1/16, and 1/32 times of exposure levels to the standard AEC timed technique (125 mAs) using the equalization factors computed for each region. Finally, the equalized image was renormalized regionally with the exposure equalization factors to result in an appearance similar to that with standard digital mammography. Two sets of FFDM images were acquired to allow for two identically, but independently, formed equalized images to be subtracted from each other to estimate the noise levels. Similarly, two identically but independently acquired standard FFDM images were subtracted to estimate the noise levels. Corrections were applied to remove the excess system noise accumulated during image superimposition in forming the equalized image. PSNRs over the compressed area of breast phantom were computed and used to quantitatively study the effects of exposure equalization on low-contrast performance in digital mammography. RESULTS We found that the highest achievable PSNR improvement factor was 1.89 for the anthropomorphic breast phantom used in this study. The overall PSNRs were measured to be 79.6 for the FFDM imaging and 107.6 for the simulated SEDM imaging on average in the compressed area of breast phantom, resulting in an average improvement of PSNR by ∼35% with exposure equalization. We also found that the PSNRs appeared to be largely uniform with exposure equalization, and the standard deviations of PSNRs were estimated to be 10.3 and 7.9 for the FFDM imaging and the simulated SEDM imaging, respectively. The average glandular dose for SEDM was estimated to be 212.5 mrad, ∼34% lower than that of standard AEC-timed FFDM (323.8 mrad) as a result of exposure equalization for the entire breast phantom. CONCLUSIONS Exposure equalization was found to substantially improve image PSNRs in dense tissue regions and result in more uniform image PSNRs. This improvement may lead to better low-contrast performance in detecting and visualizing soft tissue masses and micro-calcifications in dense tissue areas for breast imaging tasks.
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Affiliation(s)
- Xinming Liu
- Department of Imaging Physics, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030-4009, USA. xliumdanderson.org
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