1
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On utilizing 2D features from 3D scans to enhance the prediction of lung cancer survival rates. Pattern Recognit Lett 2021. [DOI: 10.1016/j.patrec.2021.09.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Khan SA, Hussain S, Yang S, Iqbal K. Effective and Reliable Framework for Lung Nodules Detection from CT Scan Images. Sci Rep 2019; 9:4989. [PMID: 30899052 PMCID: PMC6428823 DOI: 10.1038/s41598-019-41510-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Accepted: 03/11/2019] [Indexed: 12/01/2022] Open
Abstract
Lung cancer is considered more serious among other prevailing cancer types. One of the reasons for it is that it is usually not diagnosed until it has spread and by that time it becomes very difficult to treat. Early detection of lung cancer can significantly increase the chances of survival of a cancer patient. An effective nodule detection system can play a key role in early detection of lung cancer thus increasing the chances of successful treatment. In this research work, we have proposed a novel classification framework for nodule classification. The framework consists of multiple phases that include image contrast enhancement, segmentation, optimal feature extraction, followed by employment of these features for training and testing of Support Vector Machine. We have empirically tested the efficacy of our technique by utilizing the well-known Lung Image Consortium Database (LIDC) dataset. The empirical results suggest that the technique is highly effective for reducing the false positive rates. We were able to receive an impressive sensitivity rate of 97.45%.
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Affiliation(s)
- Sajid Ali Khan
- Department of Software Engineering, Foundation University Islamabad, Islamabad, Pakistan.,Department of Computer Science, Shaheed Zulfikar Ali Bhutto Institute of Science and Technology, Islamabad, Pakistan
| | - Shariq Hussain
- Department of Software Engineering, Foundation University Islamabad, Islamabad, Pakistan
| | - Shunkun Yang
- School of Reliability and Systems Engineering, Beihang University, Beijing, China.
| | - Khalid Iqbal
- COMSATS University Islamabad, Attock Campus, Attock, Pakistan
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3
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Morales Pinzón A, Orkisz M, Richard JC, Hernández Hoyos M. Lung Segmentation by Cascade Registration. Ing Rech Biomed 2017. [DOI: 10.1016/j.irbm.2017.07.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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4
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Narita A, Ohkubo M, Murao K, Matsumoto T, Wada S. Generation of realistic virtual nodules based on three-dimensional spatial resolution in lung computed tomography: A pilot phantom study. Med Phys 2017; 44:5303-5313. [PMID: 28777462 DOI: 10.1002/mp.12503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2017] [Revised: 07/03/2017] [Accepted: 07/24/2017] [Indexed: 11/08/2022] Open
Abstract
PURPOSE The aim of this feasibility study using phantoms was to propose a novel method for obtaining computer-generated realistic virtual nodules in lung computed tomography (CT). METHODS In the proposed methodology, pulmonary nodule images obtained with a CT scanner are deconvolved with the point spread function (PSF) in the scan plane and slice sensitivity profile (SSP) measured for the scanner; the resultant images are referred to as nodule-like object functions. Next, by convolving the nodule-like object function with the PSF and SSP of another (target) scanner, the virtual nodule can be generated so that it has the characteristics of the spatial resolution of the target scanner. To validate the methodology, the authors applied physical nodules of 5-, 7- and 10-mm-diameter (uniform spheres) included in a commercial CT test phantom. The nodule-like object functions were calculated from the sphere images obtained with two scanners (Scanner A and Scanner B); these functions were referred to as nodule-like object functions A and B, respectively. From these, virtual nodules were generated based on the spatial resolution of another scanner (Scanner C). By investigating the agreement of the virtual nodules generated from the nodule-like object functions A and B, the equivalence of the nodule-like object functions obtained from different scanners could be assessed. In addition, these virtual nodules were compared with the real (true) sphere images obtained with Scanner C. As a practical validation, five types of laboratory-made physical nodules with various complicated shapes and heterogeneous densities, similar to real lesions, were used. The nodule-like object functions were calculated from the images of these laboratory-made nodules obtained with Scanner A. From them, virtual nodules were generated based on the spatial resolution of Scanner C and compared with the real images of laboratory-made nodules obtained with Scanner C. RESULTS Good agreement of the virtual nodules generated from the nodule-like object functions A and B of the phantom spheres was found, suggesting the validity of the nodule-like object functions. The virtual nodules generated from the nodule-like object function A of the phantom spheres were similar to the real images obtained with Scanner C; the root mean square errors (RMSEs) between them were 10.8, 11.1, and 12.5 Hounsfield units (HU) for 5-, 7-, and 10-mm-diameter spheres, respectively. The equivalent results (RMSEs) using the nodule-like object function B were 15.9, 16.8, and 16.5 HU, respectively. These RMSEs were small considering the high contrast between the sphere density and background density (approximately 674 HU). The virtual nodules generated from the nodule-like object functions of the five laboratory-made nodules were similar to the real images obtained with Scanner C; the RMSEs between them ranged from 6.2 to 8.6 HU in five cases. CONCLUSIONS The nodule-like object functions calculated from real nodule images would be effective to generate realistic virtual nodules. The proposed method would be feasible for generating virtual nodules that have the characteristics of the spatial resolution of the CT system used in each institution, allowing for site-specific nodule generation.
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Affiliation(s)
- Akihiro Narita
- Graduate School of Health Sciences, Niigata University, Niigata, 951-8518, Japan
| | - Masaki Ohkubo
- Graduate School of Health Sciences, Niigata University, Niigata, 951-8518, Japan
| | | | | | - Shinichi Wada
- Graduate School of Health Sciences, Niigata University, Niigata, 951-8518, Japan
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5
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Farag AA, Ali A, Elshazly S, Farag AA. Feature fusion for lung nodule classification. Int J Comput Assist Radiol Surg 2017. [PMID: 28623478 DOI: 10.1007/s11548-017-1626-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
PURPOSE This article examines feature-based nodule description for the purpose of nodule classification in chest computed tomography scanning. METHODS Three features based on (i) Gabor filter, (ii) multi-resolution local binary pattern (LBP) texture features and (iii) signed distance fused with LBP which generates a combinational shape and texture feature are utilized to provide feature descriptors of malignant and benign nodules and non-nodule regions of interest. Support vector machines (SVMs) and k-nearest neighbor (kNN) classifiers in serial and two-tier cascade frameworks are optimized and analyzed for optimal classification results of nodules. RESULTS A total of 1191 nodule and non-nodule samples from the Lung Image Data Consortium database is used for analysis. Classification using SVM and kNN classifiers is examined. The classification results from the two-tier cascade SVM using Gabor features showed overall better results for identifying non-nodules, malignant and benign nodules with average area under the receiver operating characteristics (AUC-ROC) curves of 0.99 and average f1-score of 0.975 over the two tiers. CONCLUSION In the results, higher overall AUCs and f1-scores were obtained for the non-nodules cases using any of the three features, showing the greatest distinguishability over nodules (benign/malignant). SVM and kNN classifiers were used for benign, malignant and non-nodule classification, where Gabor proved to be the most effective of the features for classification. The cascaded framework showed the greatest distinguishability between benign and malignant nodules.
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Affiliation(s)
- Amal A Farag
- Kentucky Imaging Technologies, LLC., Louisville, KY, USA.
| | - Asem Ali
- Computer Vision and Image Processing Laboratory (CVIP Lab), University of Louisville, Louisville, KY, 40292, USA
| | - Salwa Elshazly
- Kentucky Imaging Technologies, LLC., Louisville, KY, USA
| | - Aly A Farag
- Computer Vision and Image Processing Laboratory (CVIP Lab), University of Louisville, Louisville, KY, 40292, USA
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6
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Han G, Liu X, Soomro NQ, Sun J, Zhao Y, Zhao X, Zhou C. Empirical Driven Automatic Detection of Lobulation Imaging Signs in Lung CT. BIOMED RESEARCH INTERNATIONAL 2017; 2017:3842659. [PMID: 28466009 PMCID: PMC5390675 DOI: 10.1155/2017/3842659] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/23/2016] [Accepted: 12/22/2016] [Indexed: 11/29/2022]
Abstract
Computer-aided detection (CAD) of lobulation can help radiologists to diagnose/detect lung diseases easily and accurately. Compared to CAD of nodule and other lung lesions, CAD of lobulation remained an unexplored problem due to very complex and varying nature of lobulation. Thus, many state-of-the-art methods could not detect successfully. Hence, we revisited classical methods with the capability of extracting undulated characteristics and designed a sliding window based framework for lobulation detection in this paper. Under the designed framework, we investigated three categories of lobulation classification algorithms: template matching, feature based classifier, and bending energy. The resultant detection algorithms were evaluated through experiments on LISS database. The experimental results show that the algorithm based on combination of global context feature and BOF encoding has best overall performance, resulting in F1 score of 0.1009. Furthermore, bending energy method is shown to be appropriate for reducing false positives. We performed bending energy method following the LIOP-LBP mixture feature, the average positive detection per image was reduced from 30 to 22, and F1 score increased to 0.0643 from 0.0599. To the best of our knowledge this is the first kind of work for direct lobulation detection and first application of bending energy to any kind of lobulation work.
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Affiliation(s)
- Guanghui Han
- Beijing Key Laboratory of Intelligent Information Technology, School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China
| | - Xiabi Liu
- Beijing Key Laboratory of Intelligent Information Technology, School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China
| | - Nouman Q. Soomro
- Department of Software Engineering, Mehran University of Engineering and Technology, SZAB Campus, Khairpur Mir's, Pakistan
| | - Jia Sun
- Beijing Key Laboratory of Intelligent Information Technology, School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China
| | - Yanfeng Zhao
- Department of Imaging Diagnosis, Cancer Institute and Hospital, Chinese Academy of Medical Sciences, Beijing, China
| | - Xinming Zhao
- Department of Imaging Diagnosis, Cancer Institute and Hospital, Chinese Academy of Medical Sciences, Beijing, China
| | - Chunwu Zhou
- Department of Imaging Diagnosis, Cancer Institute and Hospital, Chinese Academy of Medical Sciences, Beijing, China
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Kobayashi H, Ohkubo M, Narita A, Marasinghe JC, Murao K, Matsumoto T, Sone S, Wada S. A method for evaluating the performance of computer-aided detection of pulmonary nodules in lung cancer CT screening: detection limit for nodule size and density. Br J Radiol 2017; 90:20160313. [PMID: 27897029 DOI: 10.1259/bjr.20160313] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
OBJECTIVE We propose the application of virtual nodules to evaluate the performance of computer-aided detection (CAD) of lung nodules in cancer screening using low-dose CT. METHODS The virtual nodules were generated based on the spatial resolution measured for a CT system used in an institution providing cancer screening and were fused into clinical lung images obtained at that institution, allowing site specificity. First, we validated virtual nodules as an alternative to artificial nodules inserted into a phantom. In addition, we compared the results of CAD analysis between the real nodules (n = 6) and the corresponding virtual nodules. Subsequently, virtual nodules of various sizes and contrasts between nodule density and background density (ΔCT) were inserted into clinical images (n = 10) and submitted for CAD analysis. RESULTS In the validation study, 46 of 48 virtual nodules had the same CAD results as artificial nodules (kappa coefficient = 0.913). Real nodules and the corresponding virtual nodules showed the same CAD results. The detection limits of the tested CAD system were determined in terms of size and density of peripheral lung nodules; we demonstrated that a nodule with a 5-mm diameter was detected when the nodule had a ΔCT > 220 HU. CONCLUSION Virtual nodules are effective in evaluating CAD performance using site-specific scan/reconstruction conditions. Advances in knowledge: Virtual nodules can be an effective means of evaluating site-specific CAD performance. The methodology for guiding the detection limit for nodule size/density might be a useful evaluation strategy.
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Affiliation(s)
- Hajime Kobayashi
- 1 Graduate School of Health Sciences, Niigata University, Niigata, Japan.,2 Department of Radiology, Sannocho Hospital, Niigata, Japan
| | - Masaki Ohkubo
- 1 Graduate School of Health Sciences, Niigata University, Niigata, Japan
| | - Akihiro Narita
- 1 Graduate School of Health Sciences, Niigata University, Niigata, Japan
| | - Janaka C Marasinghe
- 1 Graduate School of Health Sciences, Niigata University, Niigata, Japan.,3 Department of Radiography and Radiotherapy, Faculty of Allied Health Sciences, University of Peradeniya, Peradeniya, Sri Lanka
| | | | | | - Shusuke Sone
- 6 JA Nagano Azumi General Hospital, Nagano, Japan.,7 Present Address: Chest Imaging Division, Nagano Health Promotion Corporation, Nagano, Japan
| | - Shinichi Wada
- 1 Graduate School of Health Sciences, Niigata University, Niigata, Japan
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Echegaray S, Nair V, Kadoch M, Leung A, Rubin D, Gevaert O, Napel S. A Rapid Segmentation-Insensitive "Digital Biopsy" Method for Radiomic Feature Extraction: Method and Pilot Study Using CT Images of Non-Small Cell Lung Cancer. ACTA ACUST UNITED AC 2016; 2:283-294. [PMID: 28612050 PMCID: PMC5466872 DOI: 10.18383/j.tom.2016.00163] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Quantitative imaging approaches compute features within images' regions of interest. Segmentation is rarely completely automatic, requiring time-consuming editing by experts. We propose a new paradigm, called “digital biopsy,” that allows for the collection of intensity- and texture-based features from these regions at least 1 order of magnitude faster than the current manual or semiautomated methods. A radiologist reviewed automated segmentations of lung nodules from 100 preoperative volume computed tomography scans of patients with non–small cell lung cancer, and manually adjusted the nodule boundaries in each section, to be used as a reference standard, requiring up to 45 minutes per nodule. We also asked a different expert to generate a digital biopsy for each patient using a paintbrush tool to paint a contiguous region of each tumor over multiple cross-sections, a procedure that required an average of <3 minutes per nodule. We simulated additional digital biopsies using morphological procedures. Finally, we compared the features extracted from these digital biopsies with our reference standard using intraclass correlation coefficient (ICC) to characterize robustness. Comparing the reference standard segmentations to our digital biopsies, we found that 84/94 features had an ICC >0.7; comparing erosions and dilations, using a sphere of 1.5-mm radius, of our digital biopsies to the reference standard segmentations resulted in 41/94 and 53/94 features, respectively, with ICCs >0.7. We conclude that many intensity- and texture-based features remain consistent between the reference standard and our method while substantially reducing the amount of operator time required.
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Affiliation(s)
- Sebastian Echegaray
- Department of Electrical Engineering, Stanford University, Stanford, California
| | - Viswam Nair
- Department of Radiology, Stanford University School of Medicine, Stanford, California.,Department of Medicine, Stanford University School of Medicine, Stanford, California.,Canary Center for Cancer Early Detection, Stanford University, Stanford, California
| | - Michael Kadoch
- Department of Radiology, Stanford University School of Medicine, Stanford, California
| | - Ann Leung
- Department of Radiology, Stanford University School of Medicine, Stanford, California
| | - Daniel Rubin
- Department of Radiology, Stanford University School of Medicine, Stanford, California.,Department of Medicine, Stanford University School of Medicine, Stanford, California
| | - Olivier Gevaert
- Department of Medicine, Stanford University School of Medicine, Stanford, California
| | - Sandy Napel
- Department of Radiology, Stanford University School of Medicine, Stanford, California
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Niehaus R, Raicu DS, Furst J, Armato S. Toward Understanding the Size Dependence of Shape Features for Predicting Spiculation in Lung Nodules for Computer-Aided Diagnosis. J Digit Imaging 2016; 28:704-17. [PMID: 25708891 DOI: 10.1007/s10278-015-9774-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Abstract
We analyze the importance of shape features for predicting spiculation ratings assigned by radiologists to lung nodules in computed tomography (CT) scans. Using the Lung Image Database Consortium (LIDC) data and classification models based on decision trees, we demonstrate that the importance of several shape features increases disproportionately relative to other image features with increasing size of the nodule. Our shaped-based classification results show an area under the receiver operating characteristic (ROC) curve of 0.65 when classifying spiculation for small nodules and an area of 0.91 for large nodules, resulting in a 26% difference in classification performance using shape features. An analysis of the results illustrates that this change in performance is driven by features that measure boundary complexity, which perform well for large nodules but perform relatively poorly and do no better than other features for small nodules. For large nodules, the roughness of the segmented boundary maps well to the semantic concept of spiculation. For small nodules, measuring directly the complexity of hard segmentations does not yield good results for predicting spiculation due to limits imposed by spatial resolution and the uncertainty in boundary location. Therefore, a wider range of features, including shape, texture, and intensity features, are needed to predict spiculation ratings for small nodules. A further implication is that the efficacy of shape features for a particular classifier used to create computer-aided diagnosis systems depends on the distribution of nodule sizes in the training and testing sets, which may not be consistent across different research studies.
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Affiliation(s)
- Ron Niehaus
- School of Computing, DePaul University, 243 S. Wabash Avenue, Chicago, IL, 60604, USA.
| | - Daniela Stan Raicu
- School of Computing, DePaul University, 243 S. Wabash Avenue, Chicago, IL, 60604, USA
| | - Jacob Furst
- School of Computing, DePaul University, 243 S. Wabash Avenue, Chicago, IL, 60604, USA
| | - Samuel Armato
- Department of Radiology, University of Chicago, Chicago, IL, USA
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10
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Classification of Lungs Nodule using Hybrid Features from CT Scan Images. PROGRESS IN SYSTEMS ENGINEERING 2015. [DOI: 10.1007/978-3-319-08422-0_91] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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11
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Guo W, Li Q. High performance lung nodule detection schemes in CT using local and global information. Med Phys 2012; 39:5157-68. [PMID: 22894441 DOI: 10.1118/1.4737109] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
PURPOSE A key issue in current computer-aided diagnostic (CAD) schemes for nodule detection in CT is the large number of false positives, because current schemes use only global three-dimensional (3D) information to detect nodules and discard useful local two-dimensional (2D) information. Thus, the authors integrated local and global information to markedly improve the performance levels of CAD schemes. METHODS Our database was obtained from the standard CT lung nodule database created by the Lung Image Database Consortium (LIDC). It consisted of 85 CT scans with 111 nodules of 3 mm or larger in diameter. The 111 nodules were confirmed by at least two of the four radiologists participated in the LIDC. Twenty-six nodules were missed by two of the four radiologists and were thus very difficult to detect. The authors developed five CAD schemes for nodule detection in CT using global 3D information (3D scheme), local 2D information (2D scheme), and both local and global information (2D + 3D scheme, 2D - 3D scheme, and 3D - 2D scheme). The 3D scheme, which was developed previously, used only global 3D information and discarded local 2D information, as other CAD schemes did. The 2D scheme used a uniform viewpoint reformation technique to decompose a 3D nodule candidate into a set of 2D reformatted images generated from representative viewpoints, and selected and used "effective" 2D reformatted images to remove false positives. The 2D + 3D scheme, 2D - 3D scheme, and 3D - 2D scheme used complementary local and global information in different ways to further improve the performance of lung nodule detection. The authors employed a leave-one-scan-out testing method for evaluation of the performance levels of the five CAD schemes. RESULTS At the sensitivities of 85%, 80%, and 75%, the existing 3D scheme reported 17.3, 7.4, and 2.8 false positives per scan, respectively; the 2D scheme improved the detection performance and reduced the numbers of false positives to 7.6, 2.5, and 1.3 per scan; the 2D + 3D scheme further reduced those to 2.7, 1.9, and 0.6 per scan; the 2D - 3D scheme reduced those to 7.6, 2.1, and 0.8 per scan; and the 3D - 2D scheme reduced those to 17.3, 1.6, and 1.0 per scan. CONCLUSIONS The local 2D information appears to be more useful than the global 3D information for nodule detection, particularly, when it is integrated with 3D information.
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Affiliation(s)
- Wei Guo
- School of Computer, Shenyang Aerospace University, Daoyi Development District, Shenyang, Liaoning 110136, China
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12
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3D matrix pattern based Support Vector Machines for identifying pulmonary cancer in CT scanned images. J Med Syst 2010; 36:1223-8. [PMID: 20827567 DOI: 10.1007/s10916-010-9583-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2010] [Accepted: 08/23/2010] [Indexed: 10/19/2022]
Abstract
A novel algorithm of Three Dimension matrix (3D matrix) pattern based Minimum Within-Class Scatter Support Vector Machines (MCSVMs(3Dmatrix)) is presented. Combining Minimum Within-Class Scatter Support Vector Machines (MCSVMs) and higher-order tensor technology, decision functions of MCSVMs(3Dmatrix) are calculated along with three orthogonal directions in the 3D space. And then the final decision is made by Majority Vote Method. In previous reports, each CT image is solely processed and the relation among successive CT scanned images is neglected. The case results in defective judgment at whiles. The proposed method solves the problem effectively and improves the accuracy of classification to a certain extent.
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13
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Abstract
We propose to measure quantitatively the opacity property of each pixel in a ground-glass opacity tumor from CT images. Our method results in an opacity map in which each pixel takes opacity value of [0-1]. Given a CT image, our method accomplishes the estimation by constructing a graph Laplacian matrix and solving a linear equations system, with assistance from some manually drawn scribbles for which the opacity values are easy to determine manually. Our method resists noise and is capable of eliminating the negative influence of vessels and other lung parenchyma. Experiments on 40 selected CT slices of 11 patients demonstrate the effectiveness of this technique. The opacity map produced by our method is invaluable in practice. From this map, many features can be extracted to describe the spatial distribution pattern of opacity and used in a computer-aided diagnosis system.
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14
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Pu J, Zheng B, Leader JK, Wang XH, Gur D. An automated CT based lung nodule detection scheme using geometric analysis of signed distance field. Med Phys 2008; 35:3453-61. [PMID: 18777905 DOI: 10.1118/1.2948349] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
The authors present a new computerized scheme to automatically detect lung nodules depicted on computed tomography (CT) images. The procedure is performed in the signed distance field of the CT images. To obtain an accurate signed distance field, CT images are first interpolated linearly along the axial direction to form an isotropic data set. Then a lung segmentation strategy is applied to smooth the lung border aiming to include as many juxtapleural nodules as possible while minimizing over segmentations of the lung regions. Potential nodule regions are then detected by locating local maximas of signed distances in each subvolume with values and the sizes larger than the smallest nodule of interest in the three-dimensional space. Finally, all detected candidates are scored by computing the similarity distance of their medial axis-like shapes obtained through a progressive clustering strategy combined with a marching cube algorithm from a sphere based shape. A free-response receiver operating characteristics curve is computed to assess the scheme performance. A performance test on 52 low-dose CT screening examinations that depict 184 verified lung nodules showed that during the initial stage the scheme achieved an asymptotic maximum sensitivity of 95.1% (175/184) with an average of 1200 suspicious voxels per CT examination. The nine missed nodules included two small solid nodules (with a diameter < or =3.1 mm) and seven nonsolid nodules. The final performance level after the similarity scoring stage was an absolute sensitivity level, namely, including the nine missed during the initial stage, of 81.5% (150/184) with 6.5 false-positive identifications per CT examination. This preliminary study demonstrates the feasibility of applying a simple and robust geometric model using the signed distance field to identify suspicious lung nodules. In the authors' data set the sensitivity of this scheme is not affected by nodule size. In addition to potentially being a stand alone approach, the signed distance field based method can be easily implemented as an initial filtering step in other computer-aided detection schemes.
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Affiliation(s)
- Jiantao Pu
- Imaging Research Center, Department of Radiology University of Pittsburgh, Pittsburgh, Pennsylvania 15213, USA.
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15
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Chan HP, Hadjiiski L, Zhou C, Sahiner B. Computer-aided diagnosis of lung cancer and pulmonary embolism in computed tomography-a review. Acad Radiol 2008; 15:535-55. [PMID: 18423310 PMCID: PMC2800985 DOI: 10.1016/j.acra.2008.01.014] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2007] [Revised: 01/01/2008] [Accepted: 01/17/2008] [Indexed: 02/08/2023]
Abstract
Computer-aided detection (CADe) and computer-aided diagnosis (CADx) have been important areas of research in the last two decades. Significant progress has been made in the area of breast cancer detection, and CAD techniques are being developed in many other areas. Recent advances in multidetector row computed tomography have made it an increasingly common modality for imaging of lung diseases. A thoracic examination using thin-section computed tomography contains hundreds of images. Detection of lung cancer and pulmonary embolism on computed tomographic (CT) examinations are demanding tasks for radiologists because they have to search for abnormalities in a large number of images, and the lesions can be subtle. If successfully developed, CAD can be a useful second opinion to radiologists in thoracic CT interpretation. In this review, we summarize the studies that have been reported in these areas, discuss some challenges in the development of CAD, and identify areas that deserve particular attention in future research.
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Affiliation(s)
- Heang-Ping Chan
- Department of Radiology, Med Inn Building C477, 1500 East Medical Center Drive, The University of Michigan, Ann Arbor, MI 48109-5842, USA.
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16
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Li Q, Li F, Doi K. Computerized detection of lung nodules in thin-section CT images by use of selective enhancement filters and an automated rule-based classifier. Acad Radiol 2008; 15:165-75. [PMID: 18206615 DOI: 10.1016/j.acra.2007.09.018] [Citation(s) in RCA: 112] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2007] [Revised: 08/20/2007] [Accepted: 09/21/2007] [Indexed: 11/16/2022]
Abstract
RATIONALE AND OBJECTIVES We have been developing a computer-aided diagnostic (CAD) scheme for lung nodule detection in order to assist radiologists in the detection of lung cancer in thin-section computed tomography (CT) images. MATERIALS AND METHODS Our database consisted of 117 thin-section CT scans with 153 nodules, obtained from a lung cancer screening program at a Japanese university (85 scans, 91 nodules) and from clinical work at an American university (32 scans, 62 nodules). The database included nodules of different sizes (4-28 mm, mean 10.2 mm), shapes, and patterns (solid and ground-glass opacity (GGO)). Our CAD scheme consisted of modules for lung segmentation, selective nodule enhancement, initial nodule detection, feature extraction, and classification. The selective nodule enhancement filter was a key technique for significant enhancement of nodules and suppression of normal anatomic structures such as blood vessels, which are the main sources of false positives. Use of an automated rule-based classifier for reduction of false positives was another key technique; it resulted in a minimized overtraining effect and an improved classification performance. We used a case-based four-fold cross-validation testing method for evaluation of the performance levels of our computerized detection scheme. RESULTS Our CAD scheme achieved an overall sensitivity of 86% (small: 76%, medium-sized: 94%, large: 95%; solid: 86%, mixed GGO: 89%, pure GGO: 81%) with 6.6 false positives per scan; an overall sensitivity of 81% (small: 69%, medium-sized: 91%, large: 91%; solid: 79%, mixed GGO: 88%, pure GGO: 81%) with 3.3 false positives per scan; and an overall sensitivity of 75% (small: 60%, medium-sized: 88%, large: 87%; solid: 70%, mixed GGO: 87%, pure GGO: 81%) with 1.6 false positives per scan. CONCLUSION The experimental results indicate that our CAD scheme with its two key techniques can achieve a relatively high performance for nodules presenting large variations in size, shape, and pattern.
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Affiliation(s)
- Qiang Li
- Department of Radiology, University of Chicago, 5841 South Maryland Avenue, Chicago, IL 60637, USA.
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17
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Wang P, DeNunzio A, Okunieff P, O'Dell WG. Lung metastases detection in CT images using 3D template matching. Med Phys 2007; 34:915-22. [PMID: 17441237 DOI: 10.1118/1.2436970] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
The aim of this study is to demonstrate a novel, fully automatic computer detection method applicable to metastatic tumors to the lung with a diameter of 4-20 mm in high-risk patients using typical computed tomography (CT) scans of the chest. Three-dimensional (3D) spherical tumor appearance models (templates) of various sizes were created to match representative CT imaging parameters and to incorporate partial volume effects. Taking into account the variability in the location of CT sampling planes cut through the spherical models, three offsetting template models were created for each appearance model size. Lung volumes were automatically extracted from computed tomography images and the correlation coefficients between the subregions around each voxel in the lung volume and the set of appearance models were calculated using a fast frequency domain algorithm. To determine optimal parameters for the templates, simulated tumors of varying sizes and eccentricities were generated and superposed onto a representative human chest image dataset. The method was applied to real image sets from 12 patients with known metastatic disease to the lung. A total of 752 slices and 47 identifiable tumors were studied. Spherical templates of three sizes (6, 8, and 10 mm in diameter) were used on the patient image sets; all 47 true tumors were detected with the inclusion of only 21 false positives. This study demonstrates that an automatic and straightforward 3D template-matching method, without any complex training or postprocessing, can be used to detect small lung metastases quickly and reliably in the clinical setting.
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Affiliation(s)
- Peng Wang
- Department of Biomedical Engineering, University of Rochester, Rochester, New York 14642, USA
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18
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Abstract
Computer-aided diagnosis (CAD) provides a computer output as a "second opinion" in order to assist radiologists in the diagnosis of various diseases on medical images. Currently, a significant research effort is being devoted to the detection and characterization of lung nodules in thin-section computed tomography (CT) images, which represents one of the newest directions of CAD development in thoracic imaging. We describe in this article the current status of the development and evaluation of CAD schemes for the detection and characterization of lung nodules in thin-section CT. We also review a number of observer performance studies in which it was attempted to assess the potential clinical usefulness of CAD schemes for nodule detection and characterization in thin-section CT. Whereas current CAD schemes for nodule characterization have achieved high performance levels and would be able to improve radiologists' performance in the characterization of nodules in thin-section CT, current schemes for nodule detection appear to report many false positives, and, therefore, significant efforts are needed in order further to improve the performance levels of current CAD schemes for nodule detection in thin-section CT.
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Affiliation(s)
- Qiang Li
- Department of Radiology, The University of Chicago, 5841 S. Maryland Avenue, MC2026, Chicago, IL 6063, USA.
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19
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Abstract
The role of imaging in the clinical setting as well as in the drug development process is expanding rapidly. Imaging technology now exists that is capable of detecting tumor response within hours. In parallel with this advance, a new array of more targeted and specific therapies are being developed. This paradigm shift in turn demands a more sophisticated way of quantifying response. There is a need to update and modify the current response evaluation criteria in solid tumors (RECIST), which rely solely on anatomic size measurement of tumors. In addition, response assessment guidelines will need to be increasingly disease-specific. Response assessment by imaging is now intimately involved with all stages of the drug development process, from exploratory drug discovery through clinical trials, as well as in clinical use. Imaging biomarkers and surrogate endpoints have the potential to speed drug approval significantly. The major funding institutions and the pharmaceutical industry are working more and more with researchers to help maintain progress in this multidisciplinary area involving oncologists, radiologists, molecular imaging specialists, medical physicists, and computer scientists.
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Affiliation(s)
- S D Curran
- Department of Radiology, Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY 10021, USA
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20
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Lee IJ, Gamsu G, Czum J, Wu N, Johnson R, Chakrapani S. Lung nodule detection on chest CT: evaluation of a computer-aided detection (CAD) system. Korean J Radiol 2005; 6:89-93. [PMID: 15968147 PMCID: PMC2686425 DOI: 10.3348/kjr.2005.6.2.89] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
Objective To evaluate the capacity of a computer-aided detection (CAD) system to detect lung nodules in clinical chest CT. Materials and Methods A total of 210 consecutive clinical chest CT scans and their reports were reviewed by two chest radiologists and 70 were selected (33 without nodules and 37 with 1-6 nodules, 4-15.4 mm in diameter). The CAD system (ImageChecker® CT LN-1000) developed by R2 Technology, Inc. (Sunnyvale, CA) was used. Its algorithm was designed to detect nodules with a diameter of 4-20 mm. The two chest radiologists working with the CAD system detected a total of 78 nodules. These 78 nodules form the database for this study. Four independent observers interpreted the studies with and without the CAD system. Results The detection rates of the four independent observers without CAD were 81% (63/78), 85% (66/78), 83% (65/78), and 83% (65/78), respectively. With CAD their rates were 87% (68/78), 85% (66/78), 86% (67/78), and 85% (66/78), respectively. The differences between these two sets of detection rates did not reach statistical significance. In addition, CAD detected eight nodules that were not mentioned in the original clinical radiology reports. The CAD system produced 1.56 false-positive nodules per CT study. The four test observers had 0, 0.1, 0.17, and 0.26 false-positive results per study without CAD and 0.07, 0.2, 0.23, and 0.39 with CAD, respectively. Conclusion The CAD system can assist radiologists in detecting pulmonary nodules in chest CT, but with a potential increase in their false positive rates. Technological improvements to the system could increase the sensitivity and specificity for the detection of pulmonary nodules and reduce these false-positive results.
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Affiliation(s)
- In Jae Lee
- Department of Radiology, Weill Medical College of Cornell University, New York, NY, USA
- Department of Radiology, Hallym University College of Medicine, Seoul, Korea
| | - Gordon Gamsu
- Department of Radiology, Weill Medical College of Cornell University, New York, NY, USA
| | - Julianna Czum
- Department of Radiology, Weill Medical College of Cornell University, New York, NY, USA
| | - Ning Wu
- Department of Radiology, Chinese Academy of Medical Science, Beijing, China
| | - Rebecca Johnson
- Department of Radiology, Weill Medical College of Cornell University, New York, NY, USA
| | - Sanjay Chakrapani
- Department of Radiology, Weill Medical College of Cornell University, New York, NY, USA
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Marten K, Grillhösl A, Seyfarth T, Obenauer S, Rummeny EJ, Engelke C. Computer-assisted detection of pulmonary nodules: evaluation of diagnostic performance using an expert knowledge-based detection system with variable reconstruction slice thickness settings. Eur Radiol 2004; 15:203-12. [PMID: 15578184 DOI: 10.1007/s00330-004-2544-5] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2004] [Revised: 09/30/2004] [Accepted: 10/06/2004] [Indexed: 10/26/2022]
Abstract
The purpose of this study was to evaluate the performance of a computer-assisted diagnostic (CAD) tool using various reconstruction slice thicknesses (RST). Image data of 20 patients undergoing multislice CT for pulmonary metastasis were reconstructed at 4.0, 2.0 and 0.75 mm RST and assessed by two blinded radiologists (R1 and R2) and CAD. Data were compared against an independent reference standard. Nodule subgroups (diameter >10, 4-10, <4 mm) were assessed separately. Statistical methods were the ROC analysis and Mann-Whitney U test. CAD was outperformed by readers at 4.0 mm (Az = 0.18, 0.62 and 0.69 for CAD, R1 and R2, respectively; P<0.05), comparable at 2.0 mm (Az = 0.57, 0.70 and 0.69 for CAD, R1 and R2, respectively), and superior using 0.75 mm RST (Az = 0.80, 0.70 and 0.70 and sensitivity = 0.74, 0.53 and 0.53 for CAD, R1 and R2, respectively; P<0.05). Reader performances were significantly enhanced by CAD (Az = 0.93 and 0.95 for R1 + CAD and R2 + CAD, respectively, P<0.05). The CAD advantage was best for nodules <10 mm (detection rates = 93.3, 89.9, 47.9 and 47.9% for R1 + CAD, R2 + CAD, R1 and R2, respectively). CAD using 0.75 mm RST outperformed radiologists in nodules below 10 mm in diameter and should be used to replace a second radiologist. CAD is not recommended for 4.0 mm RST.
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Affiliation(s)
- Katharina Marten
- Department of Radiology, Klinikum rechts der Isar, Technical University Munich, Ismaningerstrasse 22, 81675, Munich, Germany.
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Marten K, Seyfarth T, Auer F, Wiener E, Grillhösl A, Obenauer S, Rummeny EJ, Engelke C. Computer-assisted detection of pulmonary nodules: performance evaluation of an expert knowledge-based detection system in consensus reading with experienced and inexperienced chest radiologists. Eur Radiol 2004; 14:1930-8. [PMID: 15235812 DOI: 10.1007/s00330-004-2389-y] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2004] [Revised: 05/13/2004] [Accepted: 05/20/2004] [Indexed: 10/26/2022]
Abstract
To evaluate the performance of experienced versus inexperienced radiologists in comparison and in consensus with an interactive computer-aided detection (CAD) system for detection of pulmonary nodules. Eighteen consecutive patients (mean age: 62.2 years; range 29-83 years) prospectively underwent routine 16-row multislice computed tomography (MSCT). Four blinded radiologists (experienced: readers 1, 2; inexperienced: readers 3, 4) assessed image data against CAD for pulmonary nodules. Thereafter, consensus readings of readers 1+3, reader 1+CAD and reader 3+CAD were performed. Data were compared against an independent gold standard. Statistical tests used to calculate interobserver agreement, reader performance and nodule size were Kappa, ROC and Mann-Whitney U. CAD and experienced readers outperformed inexperienced readers (Az=0.72, 0.71, 0.73, 0.49 and 0.50 for CAD, readers 1-4, respectively; P<0.05). Performance of reader 1+CAD was superior to single reader and reader 1+3 performances (Az=0.93, 0.72 for reader 1+CAD and reader 1+3 consensus, respectively, P<0.05). Reader 3+CAD did not perform superiorly to experienced readers or CAD (Az=0.79 for reader 3+CAD; P>0.05). Consensus of reader 1+CAD significantly outperformed all other readings, demonstrating a benefit in using CAD as an inexperienced reader replacement. It is questionable whether inexperienced readers can be regarded as adequate for interpretation of pulmonary nodules in consensus with CAD, replacing an experienced radiologist.
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Affiliation(s)
- Katharina Marten
- Department of Radiology, Klinikum rechts der Isar, Technical University, Ismaningerstrasse 22, München, Germany.
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