Collapse of the Liangzhu and other Neolithic cultures in the lower Yangtze region in response to climate change

Subsistence, Environment, and Society in the Taihu Lake Area during the Neolithic Era from a Dietary Perspective

The Taihu Lake region is an important area where China’s rice agriculture originated and where early Chinese civilisation formed. Knowing how this ecologically sensitive area’s Neolithic residents adapted to environmental changes and utilised natural resources is key to understanding the origins of their agricultural practices and civilisation. Focusing on food resources, we systematically organised data from archaeobotanical and zooarchaeological research, human bone stable isotopic analyses, and fatty acid and proteome residue analyses on the Taihu Lake area’s Neolithic findings to explore the interrelationships between subsistence, the environment, and society through qualitative and quantitative analysis supported by paleoenvironmental and archaeological evidence. The results showed that during the Neolithic era (7.0–4.3 ka BP), under a suitable climate with stable freshwater wetland environments, 38 varieties of edible animals and plants were available to humans in the Taihu Lake area. Despite agriculture being an important food source, rice cultivation and husbandry developed at different paces. Paddy rice cultivation began in wetlands and had always dominated the subsistence economy, as although gathering was universal and diverse, it produced a relatively low volume of food. In contrast, husbandry did not provide sufficient meat throughout the 2000 years of the Majiabang and Songze Cultures. Thus, fishing for freshwater organisms and hunting for wild mammals were the main meat sources before the domestication of pigs became the primary source of meat during the Liangzhu Cultural period. With the available wetland ecological resources and paddy rice farming (the sole crop), the Taihu Lake area transformed into an agricultural society in which rice cultivation dominated the Songze Culture’s subsistence economy, which was also the first to exhibit social complexity. Then, finally, early civilisation developed in the Liangzhu Cultural period. This study contributes to understanding the unique evolutionary path of early Chinese civilisation and has important implications on sustainable resource utilisation for constructing ecological civilisations in present-day societies.

The Spatiotemporal Patterns of Human Settlement during the Longshan and Erlitou Periods in Relation to Extreme Floods and Subsistence Strategy in the Upper and Middle Qin River Reaches, Central China

Human settlement numbers have significantly changed before and after ~4000 cal. y BP in the upper and middle Qin River reaches, but the external and internal factors driving this change remain unclear. In this study, we examine changing spatial and temporal patterns of the Longshan and Erlitou settlements in relation to extreme flooding at ~4000 cal. y BP and a variety of subsistence strategies during the Longshan and Erlitou periods. The results indicate that settlement number, settlement distribution, and subsistence strategies exhibited obvious shifts between the Longshan and Erlitou periods, and the episode at ~4000 cal. y BP was an extreme-flood-rich interval within and around the Qin River Basin. During the Longshan and Erlitou periods, millet-based agriculture dominated local subsistence strategy, and ancient people would prefer to reside in the areas suitable for farming, causing the valley plains in the upper and middle Qin River reaches to contain most Longshan and Erlitou settlements. However, the frequent occurrence of extreme floods at ~4000 cal. y BP, in conjunction with intergroup conflicts due to a large amount of population immigration during the late Longshan period, is likely to have jointly decreased the settlement number and shrunk the spatial range of human settlement distribution. Subsequently, with the end of the extreme-flood-rich episode and the increasing proportion of higher-water-requirement foxtail millet in cropping structures of human subsistence strategy, more Erlitou settlements were distributed in the wetter valley plains of the middle Qin River reaches.

Genomics of Alzheimer's disease implicates the innate and adaptive immune systems

Alzheimer's disease (AD) is a chronic neurodegenerative disease characterised by cognitive impairment, behavioural alteration, and functional decline. Over 130 AD-associated susceptibility loci have been identified by genome-wide association studies (GWAS), while whole genome sequencing (WGS) and whole exome sequencing (WES) studies have identified AD-associated rare variants. These variants are enriched in APOE, TREM2, CR1, CD33, CLU, BIN1, CD2AP, PILRA, SCIMP, PICALM, SORL1, SPI1, RIN3, and more genes. Given that aging is the single largest risk factor for late-onset AD (LOAD), the accumulation of somatic mutations in the brain and blood of AD patients have also been explored. Collectively, these genetic findings implicate the role of innate and adaptive immunity in LOAD pathogenesis and suggest that a systemic failure of cell-mediated amyloid-β (Aβ) clearance contributes to AD onset and progression. AD-associated variants are particularly enriched in myeloid-specific regulatory regions, implying that AD risk variants are likely to perturbate the expression of myeloid-specific AD-associated genes to interfere Aβ clearance. Defective phagocytosis, endocytosis, and autophagy may drive Aβ accumulation, which may be related to naturally-occurring antibodies to Aβ (Nabs-Aβ) produced by adaptive responses. Passive immunisation is providing efficiency in clearing Aβ and slowing cognitive decline, such as aducanumab, donanemab, and lecanemab (ban2401). Causation of AD by impairment of the innate immunity and treatment using the tools of adaptive immunity is emerging as a new paradigm for AD, but immunotherapy that boosts the innate immune functions of myeloid cells is highly expected to modulate disease progression at asymptomatic stage.