1
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Shimizu T, Hashimoto K, Hada M, Miyazaki M, Fujii M. A theoretical study on the size-dependence of ground-state proton transfer in phenol-ammonia clusters. Phys Chem Chem Phys 2018; 20:3265-3276. [PMID: 29134211 DOI: 10.1039/c7cp05247b] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Geometries and infrared (IR) spectra in the mid-IR region of phenol-(ammonia)n (PhOH-(NH3)n) (n = 0-10) clusters have been studied using density functional theory (DFT) to investigate the critical number of solvent molecules necessary to promote ground-state proton transfer (GSPT). For n ≤ 8 clusters, the most stable isomer is a non-proton-transferred (non-PT) structure, and all isomers found within 1.5 kcal mol-1 from it are also non-PT structures. For n = 9, the most stable isomer is also a non-PT structure; however, the second stable isomer is a PT structure, whose relative energy is within the experimental criterion of population (0.7 kcal mol-1). For n = 10, the PT structure is the most stable one. We can therefore estimate that the critical size of GSPT is n = 9. This is confirmed by the fact that these calculated IR spectra are in good accordance with our previous experimental results of mid-IR spectra. It is demonstrated that characteristic changes of the ν9a and ν12 bands in the skeletal vibrational region provide clear information that the GSPT reaction has occurred. It was also found that the shortest distance between the π-ring and the solvent moiety is a good indicator of the PT reaction.
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Affiliation(s)
- Toshihiko Shimizu
- Laboratory for Chemistry and Life Science, Institute for Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan.
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2
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Pérez de Tudela R, Marx D. Acid Dissociation in HCl-Water Clusters is Temperature Dependent and Cannot be Detected Based on Dipole Moments. PHYSICAL REVIEW LETTERS 2017; 119:223001. [PMID: 29286767 DOI: 10.1103/physrevlett.119.223001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Indexed: 05/09/2023]
Abstract
The dissociation of acids in aqueous environments at low temperatures in the presence of a limited amount of water is underlying a wealth of processes from atmospheric to interstellar science. For the paradigmatic case of HCl(H_{2}O)_{n} clusters, our extensive ab initio path integral simulations quantify in terms of free energy differences and barriers that n=4 water molecules are indeed required to dissociate HCl at low temperatures. Increasing the temperature, however, reverses the process and thus counteracts dissociation by fluctuation-driven recombination. The size of the electric dipole moment is shown to not correlate with the acid being in its dissociated or molecular state, thus rendering its measurement as a function of n unable to detect the dissociation transition.
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Affiliation(s)
| | - Dominik Marx
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany
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3
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Xue RJ, Grofe A, Yin H, Qu Z, Gao J, Li H. Perturbation Approach for Computing Infrared Spectra of the Local Mode of Probe Molecules. J Chem Theory Comput 2017; 13:191-201. [PMID: 28068771 DOI: 10.1021/acs.jctc.6b00733] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Linear and two-dimensional infrared (IR) spectroscopy of site-specific probe molecules provides an opportunity to gain a molecular-level understanding of the local hydrogen-bonding network, conformational dynamics, and long-range electrostatic interactions in condensed-phase and biological systems. A challenge in computation is to determine the time-dependent vibrational frequencies that incorporate explicitly both nuclear quantum effects of vibrational motions and an electronic structural representation of the potential energy surface. In this paper, a nuclear quantum vibrational perturbation (QVP) method is described for efficiently determining the instantaneous vibrational frequency of a chromophore in molecular dynamics simulations. Computational efficiency is achieved through the use of (a) discrete variable representation of the vibrational wave functions, (b) a perturbation theory to evaluate the vibrational energy shifts due to solvent dynamic fluctuations, and (c) a combined QM/MM potential for the systems. It was found that first-order perturbation is sufficiently accurate, enabling time-dependent vibrational frequencies to be obtained on the fly in molecular dynamics. The QVP method is illustrated in the mode-specific linear and 2D-IR spectra of the H-Cl stretching frequency in the HCl-water clusters and the carbonyl stretching vibration of acetone in aqueous solution. To further reduce computational cost, a hybrid strategy was proposed, and it was found that the computed vibrational spectral peak position and line shape are in agreement with experimental results. In addition, it was found that anharmonicity is significant in the H-Cl stretching mode, and hydrogen-bonding interactions further enhance anharmonic effects. The present QVP method complements other computational approaches, including path integral-based molecular dynamics, and represents a major improvement over the electrostatics-based spectroscopic mapping procedures.
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Affiliation(s)
- Rui-Jie Xue
- Institute of Theoretical Chemistry, Jilin University , 2519 Jiefang Road, Changchun 130023, People's Republic of China
| | - Adam Grofe
- Department of Chemistry and Supercomputing Institute, University of Minnesota , 207 Pleasant Street, SE, Minneapolis, Minnesota 55455, United States
| | - He Yin
- Institute of Theoretical Chemistry, Jilin University , 2519 Jiefang Road, Changchun 130023, People's Republic of China
| | - Zexing Qu
- Institute of Theoretical Chemistry, Jilin University , 2519 Jiefang Road, Changchun 130023, People's Republic of China
| | - Jiali Gao
- Institute of Theoretical Chemistry, Jilin University , 2519 Jiefang Road, Changchun 130023, People's Republic of China.,Department of Chemistry and Supercomputing Institute, University of Minnesota , 207 Pleasant Street, SE, Minneapolis, Minnesota 55455, United States
| | - Hui Li
- Institute of Theoretical Chemistry, Jilin University , 2519 Jiefang Road, Changchun 130023, People's Republic of China
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4
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Shimizu T, Miyazaki M, Fujii M. Theoretical Study on the Size Dependence of Ground-State Proton Transfer in 1-Naphthol–Ammonia Clusters. J Phys Chem A 2016; 120:7167-74. [DOI: 10.1021/acs.jpca.6b07079] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Toshihiko Shimizu
- Laboratory
for Chemistry
and Life Science, Institute for Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Mitsuhiko Miyazaki
- Laboratory
for Chemistry
and Life Science, Institute for Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Masaaki Fujii
- Laboratory
for Chemistry
and Life Science, Institute for Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
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5
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Zischang J, Skvortsov D, Choi MY, Mata RA, Suhm MA, Vilesov AF. Helium Nanodroplet Study of the Hydrogen-Bonded OH Vibrations in HCl–H2O Clusters. J Phys Chem A 2014; 119:2636-43. [DOI: 10.1021/jp509683g] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Julia Zischang
- Institute
of Physical Chemistry, Georg-August-Universität Göttingen, Tammannstraße
6, 37077 Göttingen, Germany
| | - Dmitry Skvortsov
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089, United States
| | - Myong Yong Choi
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089, United States
- Department
of Chemistry and Research Institute of Natural Sciences, Gyeongsang National University, Jinju 660-701, South Korea
| | - Ricardo A. Mata
- Institute
of Physical Chemistry, Georg-August-Universität Göttingen, Tammannstraße
6, 37077 Göttingen, Germany
| | - Martin A. Suhm
- Institute
of Physical Chemistry, Georg-August-Universität Göttingen, Tammannstraße
6, 37077 Göttingen, Germany
| | - Andrey F. Vilesov
- Department
of Chemistry, University of Southern California, Los Angeles, California 90089, United States
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6
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Baer MD, Fulton JL, Balasubramanian M, Schenter GK, Mundy CJ. Persistent Ion Pairing in Aqueous Hydrochloric Acid. J Phys Chem B 2014; 118:7211-20. [DOI: 10.1021/jp501091h] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Marcel D. Baer
- Physical
Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - John L. Fulton
- Physical
Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | | | - Gregory K. Schenter
- Physical
Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Christopher J. Mundy
- Physical
Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
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7
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A theoretical study on ascorbic acid dissociation in water clusters. J Mol Model 2014; 20:2128. [DOI: 10.1007/s00894-014-2128-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2013] [Accepted: 12/27/2013] [Indexed: 11/26/2022]
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8
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Walewski Ł, Forbert H, Marx D. Interaction-induced localisation of protons in hydrogen bonds at superfluid helium temperatures. Mol Phys 2013. [DOI: 10.1080/00268976.2013.822112] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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9
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Miyazaki M, Kawanishi A, Nielsen I, Alata I, Ishiuchi SI, Dedonder C, Jouvet C, Fujii M. Ground State Proton Transfer in Phenol–(NH3)n (n ≤ 11) Clusters Studied by Mid-IR Spectroscopy in 3–10 μm Range. J Phys Chem A 2013; 117:1522-30. [DOI: 10.1021/jp312074m] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Mitsuhiko Miyazaki
- Chemical Spectroscopy Division,
Chemical Resources Laboratory, Tokyo Institute of Technology, 4259-R1-15, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Ayako Kawanishi
- Chemical Spectroscopy Division,
Chemical Resources Laboratory, Tokyo Institute of Technology, 4259-R1-15, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Iben Nielsen
- Institut des Sciences Moléculaires
d’Orsay and Centre Laser de l’Université Paris
Sud, Université Paris-Sud 11, 91405
Orsay Cedex, France
| | - Ivan Alata
- Institut des Sciences Moléculaires
d’Orsay and Centre Laser de l’Université Paris
Sud, Université Paris-Sud 11, 91405
Orsay Cedex, France
| | - Shun-ichi Ishiuchi
- Chemical Spectroscopy Division,
Chemical Resources Laboratory, Tokyo Institute of Technology, 4259-R1-15, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
| | - Claude Dedonder
- Institut des Sciences Moléculaires
d’Orsay and Centre Laser de l’Université Paris
Sud, Université Paris-Sud 11, 91405
Orsay Cedex, France
- PIIM−UMR
CNRS 7345, Aix Marseille Université, Avenue Escadrille
Normandie-Niémen, 13397 Marseille Cedex 20, France
| | - Christophe Jouvet
- Institut des Sciences Moléculaires
d’Orsay and Centre Laser de l’Université Paris
Sud, Université Paris-Sud 11, 91405
Orsay Cedex, France
- PIIM−UMR
CNRS 7345, Aix Marseille Université, Avenue Escadrille
Normandie-Niémen, 13397 Marseille Cedex 20, France
| | - Masaaki Fujii
- Chemical Spectroscopy Division,
Chemical Resources Laboratory, Tokyo Institute of Technology, 4259-R1-15, Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan
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10
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Ayotte P, Marchand P, Daschbach JL, Smith RS, Kay BD. HCl Adsorption and Ionization on Amorphous and Crystalline H2O Films below 50 K. J Phys Chem A 2011; 115:6002-14. [DOI: 10.1021/jp110398j] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Patrick Ayotte
- Département de Chimie, Université de Sherbrooke, 2500 Boulevard Université, Sherbrooke, Québec, Canada J1K 2R1
| | - Patrick Marchand
- Département de Chimie, Université de Sherbrooke, 2500 Boulevard Université, Sherbrooke, Québec, Canada J1K 2R1
| | - John L. Daschbach
- Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, P.O. Box 999, Mail Stop K8-88, Richland, Washington 99352, United States
| | - R. Scott Smith
- Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, P.O. Box 999, Mail Stop K8-88, Richland, Washington 99352, United States
| | - Bruce D. Kay
- Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, P.O. Box 999, Mail Stop K8-88, Richland, Washington 99352, United States
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11
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Baer M, Marx D, Mathias G. Assigning Predissociation Infrared Spectra of Microsolvated Hydronium Cations H3O+⋅(H2)n (n=0, 1, 2, 3) by Ab Initio Molecular Dynamics. Chemphyschem 2011; 12:1906-15. [DOI: 10.1002/cphc.201000955] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2010] [Revised: 02/02/2011] [Indexed: 11/07/2022]
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12
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Forbert H, Masia M, Kaczmarek-Kedziera A, Nair NN, Marx D. Aggregation-induced chemical reactions: acid dissociation in growing water clusters. J Am Chem Soc 2011; 133:4062-72. [PMID: 21351796 DOI: 10.1021/ja1099209] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Understanding chemical reactivity at ultracold conditions, thus enabling molecular syntheses via interstellar and atmospheric processes, is a key issue in cryochemistry. In particular, acid dissociation and proton transfer reactions are ubiquitous in aqueous microsolvation environments. Here, the full dissociation of a HCl molecule upon stepwise solvation by a small number of water molecules at low temperatures, as relevant to helium nanodroplet isolation (HENDI) spectroscopy, is analyzed in mechanistic detail. It is found that upon successive aggregation of HCl with H(2)O molecules, a series of cyclic heteromolecular structures, up to and including HCl(H(2)O)(3), are initially obtained before a precursor state for dissociation, HCl(H(2)O)(3)···H(2)O, is observed upon addition of a fourth water molecule. The latter partially aggregated structure can be viewed as an "activated species", which readily leads to dissociation of HCl and to the formation of a solvent-shared ion pair, H(3)O(+)(H(2)O)(3)Cl(-). Overall, the process is mostly downhill in potential energy, and, in addition, small remaining barriers are overcome by using kinetic energy released as a result of forming hydrogen bonds due to aggregation. The associated barrier is not ruled by thermal equilibrium but is generated by athermal non-equilibrium dynamics. These "aggregation-induced chemical reactions" are expected to be of broad relevance to chemistry at ultralow temperature much beyond HENDI spectroscopy.
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Affiliation(s)
- Harald Forbert
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany.
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13
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Kisiel Z, Lesarri A, Neill JL, Muckle MT, Pate BH. Structure and properties of the (HCl)2H2O cluster observed by chirped-pulse Fourier transform microwave spectroscopy. Phys Chem Chem Phys 2011; 13:13912-9. [DOI: 10.1039/c1cp20841a] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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14
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Sun J, Bousquet D, Forbert H, Marx D. Glycine in aqueous solution: solvation shells, interfacial water, and vibrational spectroscopy from ab initio molecular dynamics. J Chem Phys 2010; 133:114508. [DOI: 10.1063/1.3481576] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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