Tryptophan operon of Escherichia coli: regulatory behavior in Salmonella typhimurium cytoplasm

Signal transducers and enzyme cofactors are susceptible to oxidation by nanographite impurities in carbon nanotube materials

Carbon nanotubes (CNTs) are often employed in biofuel cells, artificial photosystems and bioelectronics in order to enhance electron transfer and to efficiently shuttle electrons between redox active molecules and the electrode surface. However, it should be noted that typical CNTs are highly heterogeneous materials, containing large amounts of impurities. Herein, we report the influence of nanographite impurities contained within CNTs upon the redox properties of signal transducers and enzyme cofactors that are vital for the functioning of biofuel cells, artificial leaves and bioelectronics as well as for the survival of living organisms. We investigate the susceptibility of tyrosine and tryptophan, amino acids involved in electron transfer and biorecognition reactions as well in the synthesis of neurotransmitters, in addition we also consider the susceptibility of the principal electron carrier β-nicotinamide adenine dinucleotide. We conclude that nanographite impurities within CNTs are responsible for the "electrocatalytic" oxidation of NADH and two amino acids involved in signal transduction, tyrosine and tryptophan. Our findings are of high importance for both industrial and biomedical applications.

The tryptophan repressor sequence is highly conserved among the Enterobacteriaceae

Tryptophan biosynthesis in Escherichia coli is regulated by the product of the trpR gene, the tryptophan (Trp) repressor. Trp aporepressor binds the corepressor, L-tryptophan, to form a holorepressor complex, which binds trp operator DNA tightly, and inhibits transcription of the tryptophan biosynthetic operon. The conservation of trp operator sequences among enteric Gram-negative bacteria suggests that trpR genes from other bacterial species can be cloned by complementation in E. coli. To clone trpR homologues, a deletion of the E. coli trpR gene, delta trpR504, was made on a plasmid by site-directed mutagenesis, then crossed onto the E. coli genome. Plasmid clones of the trpR genes of Enterobacter aerogenes and Enterobacter cloacae were isolated by complementation of the delta trpR504 allele, scored as the ability to repress beta-galactosidase synthesis from a prophage-borne trpE-lacZ gene fusion. The predicted amino acid sequences of four enteric TrpR proteins show differences, clustered on the backside of the folded repressor, opposite the DNA-binding helix-turn-helix substructures. These differences are predicted to have little effect on the interactions of the aporepressor with tryptophan, holorepressor with operator DNA, or tandemly bound holorepressor dimers with one another. Although there is some variation observed at the dimer interface, interactions predicted to stabilize the interface are conserved. The phylogenetic relationships revealed by the TrpR amino acid sequence alignment agree with the results of others.

Nucleotide sequence of the Salmonella typhimurium trpR gene

The sequence of the Salmonella typhimurium trpR gene and flanking DNA was determined on both strands. The DNA sequence predicts a polypeptide product of 108 amino acids with a molecular weight of 12,274 daltons. The TrpR protein of S. typhimurium differs by three amino acid residues from that of E. coli. The promoter/operator region of trpR is completely conserved between E. coli and S. typhimurium. The nucleotide sequence of the trpR sector of the S. typhimurium genome was 87.4% identical to the corresponding region of the E. coli genome. Within the protein coding segments of the two organisms, 94.4% of the amino acid residues were identical. In S. typhimurium, as in E. coli, there is a Palindromic Unit element (PU) between the translation termination triplet of trpR and that of a divergently oriented unidentified reading frame (URF-143). However, the PU segment of S. typhimurium is 85 nucleotides shorter than its E. coli counterpart.

Escherichia coli K-12 F' plasmids carrying insertion sequences IS1 and IS5

A simple method is described for the detection of the insertion elements IS1 and IS5 in Escherichia coli F' plasmids. Several of these insertion elements are normal constituents of the E. coli chromosome and are located on chromosomal regions carried by the F' plasmids, while several others were probably acquired during the isolation or propagation of the F' plasmids. The F' plasmids carrying copies of IS1 or IS5 have been transferred into Salmonella (a host lacking chromosomal copies of IS1 and IS5) where individual copies can be examined for a variety of properties, including structural similarities and ability to transpose to new sites.

Escherichia coli and Salmonella typhimurium supX genes specify deoxyribonucleic acid topoisomerase I

Mutations of the Escherichia coli or Salmonella typhimurium supX genes eliminated deoxyribonucleic acid topoisomerase I. Suppression of a supX amber mutation partially restored the topoisomerase. Multicopy plasmids carrying supX+ caused overproduction of topoisomerase. Thus, these supX genes were identified as topA genes which specify deoxyribonucleic acid topoisomerase I.

Locations of the opp and supX genes of Salmonella typhimurium and Escherichia coli

The chromosomal locations of the supX and opp loci of Salmonella typhimurium LT2 and Escherichia coli K-12 were identified and found to result in the same gene sequence in both species, namely, pyrF-cysB-supX-trpPOLEDCBA-tonB(chr)-opp. These results differ from a previously reported location of the opp gene on the E. coli chromosome. Evidence indicates that the opp gene lies between chr(tonB) and galU in S. typhimurium.

Fine-structure mapping and complementation analysis of the Escherichia coli cysB gene

Sixty-two point mutations were isolated in Escherichia coli by means of transduction with mutagenized phage P1. Twenty-two deletions extending into cysB but able to recombine with at least some of the point mutations were isolated on a transmissible E. coli plasmid. Mapping of the point mutations against the deletions divided the former into 16 deletion groups. Nine merodiploids were constructed in which the chromosome carried one of the three point mutations most distal to the trp operon and in which a plasmid carried one of the three point mutations most proximal to the trp operon. All of these showed a Cys-phenotype. It follows that mutations at the two extreme ends of the region belong to the same complementation group.

Tryptophan operon regulation in interspecific hybrids of enteric bacteria

We examined tryptophan regulation in merodiploid hybrids in which a plasmid carrying the trp operon of Escherichia was introduced into Trp mutants of other enteric genera, or in which a plasmid carrying the trpR+ (repressor) gene of E. coli was transfered into fully constitutive trpR mutants of other genera. In these hybrids the trp operon of one species is controlled by the repressor of a different species. Similar investigations were possible in transduction hybrids in which either the trp operon or the trpR+ locus of Shigella dysenteriae was introduced into E. coli. Our measurements of trp enzymes levels in repressed and nonrepressed cells indicate that Trp regulation is normal, with only minor quantitative variations, in hybrids between E coli and Shigella dysenteriae, Salmonella typhimurium, Klebsiella aerogenes, Serratia marcescens, and Proteus mirabilis. Our results support the idea that a repressor-operator mechanism for regulating trp messenger ribonucleic acid production evolved in a common ancestor of the enteric bacteria, and that this repressor-operator recognition has been conversed during the evolutionary divergence of the Enterobacteriaceae.

Regulatory gene of phenylalanine biosynthesis (pheR) in Salmonella typhimurium

4-Fluorophenylalanine-resistant mutants of Salmonella typhimurium were isolated in which synthesis of chorismate mutase P-prephenate dehydratase (specified by pheA) was highly elevated. Transduction analysis showed that the mutation affecting pheA activity was not linked to pheA, and conjugation and merodiploid analysis indicated that it was in the 95- to 100-min region of the Salmonella chromosome. Evidence is presented for the hypothesis that the mutation responsible for constitutivity of chorismate mutase P-prephenate dehydratase occurred in pheR, a gene specifying a cytoplasmic product that affected pheA. pheR mutants were found to carry a second mutation, tyrO. The tyrO mutation acts cis to cause increased levels of the tyrosine biosynthetic enzymes 3-deoxy-d-arabinoheptulosonate 7-phosphate synthetase (tyr) and prephenate dehydrogenase, but it has no effect on regulation of pheA.

Recognition of an Escherichia operator by a Salmonella repressor

Escherichia coli leu(+) episomes were transferred to Salmonella typhimurium. The levels of two leucine-forming enzymes were normal (low) in the resulting merodiploids, suggesting that the putative Samonella leucine repressor recognizes the Escherichia leucine operator.

Operon coordination in different bacterial hosts

Coordination of gene expression in the lac operon was compared in Escherichia coli and Salmonella typhimurium as an approach to detecting possible differences in protein synthesis or membrane structure between organisms. Either a wild-type F' lac pro(AB) episome or the same episome with a polar mutation in one of the lac genes was introduced into pro(-) derivatives of the two strains of bacteria. Activity assays showed that the beta-galactosidase levels were only slightly lower in the S. typhimurium cells than in E. coli cells, whereas the transacetylase levels were significantly higher in S. typhimurium for all of the lac markers tested. Galactoside transport activities were always comparable in the two strains of bacteria; this latter result indicates that the cell envelopes of E. coli and S. typhimurium do not differ sufficiently to affect the membrane-associated lac transport system. It was found, however, that the specific transport activity is very sensitive to culture age in both bacteria, and decreases rapidly in cultures past the mid-exponential phase of growth.

Variations in enzyme phenotypes and their underlying genotypes among wild strains of the genus Neurospora

Twenty-three exotic strains of four species ofNeurospora(N. crassa, N. sitophila, N. intermediaandN. tetrasperma) were grown in minimal medium and their enzyme phenotypes were compared. The exotic strains did not differ substantially with respect to the specific activities of the biosynthetic enzymes, ornithine transcarbamylase (OTC), carbamyl phosphokinase and aspartate transcarbamylase. Exotic strains ofN. crassaandN. sitophilawere crossed with laboratory mutants ofN. crassato determine whether there were significant differences among the exotic strains in the gene complexes underlying their enzyme phenotypes. Most of the exotic strains carried similar OTC structural genes and similar genetic modifiers of OTC activity: their OTC structural genes were expressed normally in the genomes of the parent strains, in the alien genomes of standard laboratory mutants and in the mixed genomes of parent × mutant hybrids. One exoticN. crassacarried a distinctive OTC structural gene that elevated OTC activity when transferred into the genome of a standard laboratory mutant. A second exoticN. crassacarried distinctive genetic modifiers of OTC activity: two mutations,c-andhi, interacted in the exotic parent to normalize OTC activity and rate of growth, buthiled to extremely high OTC activities and to a reduction in rate of growth when separated fromc-by interstrain recombination.