New Insights of Geomorphologic and Lithologic Features on Wudalianchi Volcanoes in the Northeastern China from the ASTER Multispectral Data

Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) imaging system onboard NASA’s (National Aeronautics and Space Administration’s) Terra satellite is capable of measuring multispectral reflectance of the earth’s surface targets in visible and infrared (VNIR) to shortwave infrared (SWIR) (until 2006) as well as multispectral thermal infrared (TIR) regions. ASTER VNIR stereo imaging technique can provide high-resolution digital elevation models (DEMs) data. The DEMs data, three-dimensional (3D) perspective, and ratio images produced from the ASTER multispectral data are employed to analyze the geomorphologic and lithologic features of Wudalianchi volcanoes in the northeastern China. Our results indicate that the 14 major conical volcanic craters of Wudalianchi volcanoes are arranged as three sub-parallel zones, extending in a NE (Northeast) direction, which is similar to the direction of regional fault system based on the ASTER DEMs data. Among the 14 volcanic craters in Wudalianchi, the Laoheishan, and Huoshaoshan lavas flows, after the historic eruptions, pouring down from the crater, partially blocked the Baihe River, which forms the Five Large Connected Pools, known as the Wudalianchi Lake. Lithologic mapping shows that ASTER multispectral ratio imagery, particularly, the Lava Flow Index (LFI) (LFI = B10/B12) imagery, can clearly distinguish different lava flow units, and at least four stages of volcanic eruptions are revealed in the Wudalianchi Quaternary volcano cluster. Thus, ASTER multispectral TIR data can be used to determine relative dating of Quaternary volcanoes in the semi-arid region. Moreover, ASTER 3D perspective image can present an excellent view for tracking the flow directions of different lavas of Wudalianchi Holocene volcanoes.

Seismic imaging of mantle wedge corner flow and arc magmatism

I reviewed studies on the inhomogeneous seismic structure of the mantle wedge in subduction zones, in relation to corner flow and its implications for arc magmatism. Seismic studies in Tohoku clearly imaged the descending flow portion of the corner flow as a thin seismic low-velocity layer right above the slab. Slab-derived H₂O is fixed to the layer as hydrous minerals, which are brought down by the slab and eventually decompose. The released H₂O rises and encounters the ascending flow, formed to fill the gap caused by the descending flow. The combination of H₂O addition and adiabatic decompression causes partial melting within the ascending flow. For many subduction zones, seismic tomography has distinctly imaged the ascending flow of the corner flow as a seismic low-velocity and/or high-attenuation layer in the mantle wedge inclined nearly parallel to the slab. These observations indicate that the volcanic front in subduction zones is formed both by the ascending flow and the addition of slab-derived H₂O.

Upper- and mid-mantle interaction between the Samoan plume and the Tonga-Kermadec slabs

Mantle plumes are thought to play a key role in transferring heat from the core-mantle boundary to the lithosphere, where it can significantly influence plate tectonics. On impinging on the lithosphere at spreading ridges or in intra-plate settings, mantle plumes may generate hotspots, large igneous provinces and hence considerable dynamic topography. However, the active role of mantle plumes on subducting slabs remains poorly understood. Here we show that the stagnation at 660 km and fastest trench retreat of the Tonga slab in Southwestern Pacific are consistent with an interaction with the Samoan plume and the Hikurangi plateau. Our findings are based on comparisons between 3D anisotropic tomography images and 3D petrological-thermo-mechanical models, which self-consistently explain several unique features of the Fiji-Tonga region. We identify four possible slip systems of bridgmanite in the lower mantle that reconcile the observed seismic anisotropy beneath the Tonga slab (V(SH)>V(SV)) with thermo-mechanical calculations.

Seismic evidence of effects of water on melt transport in the Lau back-arc mantle

Processes of melt generation and transport beneath back-arc spreading centres are controlled by two endmember mechanisms: decompression melting similar to that at mid-ocean ridges and flux melting resembling that beneath arcs. The Lau Basin, with an abundance of spreading ridges at different distances from the subduction zone, provides an opportunity to distinguish the effects of these two different melting processes on magma production and crust formation. Here we present constraints on the three-dimensional distribution of partial melt inferred from seismic velocities obtained from Rayleigh wave tomography using land and ocean-bottom seismographs. Low seismic velocities beneath the Central Lau Spreading Centre and the northern Eastern Lau Spreading Centre extend deeper and westwards into the back-arc, suggesting that these spreading centres are fed by melting along upwelling zones from the west, and helping to explain geochemical differences with the Valu Fa Ridge to the south, which has no distinct deep low-seismic-velocity anomalies. A region of low S-wave velocity, interpreted as resulting from high melt content, is imaged in the mantle wedge beneath the Central Lau Spreading Centre and the northeastern Lau Basin, even where no active spreading centre currently exists. This low-seismic-velocity anomaly becomes weaker with distance southward along the Eastern Lau Spreading Centre and the Valu Fa Ridge, in contrast to the inferred increase in magmatic productivity. We propose that the anomaly variations result from changes in the efficiency of melt extraction, with the decrease in melt to the south correlating with increased fractional melting and higher water content in the magma. Water released from the slab may greatly reduce the melt viscosity or increase grain size, or both, thereby facilitating melt transport.

Probing the chemistry of molecular heterojunctions using thermoelectricity

Thermopower measurements offer an alternative transport measurement that can characterize the dominant transport orbital and is independent of the number of molecules in the junction. This method is now used to explore the effect of chemical structure on the electronic structure and charge transport. We interrogate junctions, using a modified scanning tunneling microscope break junction technique, where: (i) the 1,4-benzenedithiol (BDT) molecule has been modified by the addition of electron-withdrawing or -donating groups such as fluorine, chlorine, and methyl on the benzene ring; and (ii) the thiol end groups on BDT have been replaced by the cyanide end groups. Cyanide end groups were found to radically change transport relative to BDT such that transport is dominated by the lowest unoccupied molecular orbital in 1,4-benzenedicyanide, while substituents on BDT generated small and predictable changes in transmission.

Amine-gold linked single-molecule circuits: experiment and theory

A combination of theory and experiment is used to quantitatively understand the conductance of single-molecule benzenediamine-gold junctions. A newly developed analysis is applied to a measured junction conductance distribution, based on 59 000 individual conductance traces, which has a clear peak at 0.0064 G0 and a width of +/-47%. This analysis establishes that the distribution width originates predominantly from variations in conductance across different junctions rather than variations in conductance during junction elongation. Conductance calculations based on density functional theory (DFT) for 15 distinct junction geometries show a similar spread. We show explicitly that differences in local structure have a limited influence on conductance because the amine-Au bonding motif is well-defined and flexible, explaining the narrow distributions seen in the experiments. The minimal impact of junction structure on conductance permits an unambiguous comparison of calculated and measured conductance values and a direct assessment of the widely used DFT theoretical framework. The average calculated conductance (0.046 G0) is found to be seven times larger than experiment. This discrepancy is explained quantitatively in terms of electron correlation effects to the molecular level alignments in the junction.

Study of molecular junctions with a combined surface-enhanced Raman and mechanically controllable break junction method

We have developed a combined surface-enhanced Raman spectroscopy (SERS) and break junction method to detect and characterize molecules between two microfabricated electrodes separated with a gap that can be continuously adjusted from a few angstroms to nanometers. It allows us to obtain a vibrational fingerprint of the adjustable molecular junction while performing electron transport measurements on the molecule simultaneously. This new approach will provide not only new insights into electron transport properties of molecule junctions on a chip but also the mechanism of single-molecule-SERS.

Molecular rectification of a helical peptide with a redox group in the metal-molecule-metal junction

A helical hexadecapeptide immobilized on gold via a thiophenyl group at the N-terminal was analyzed by scanning tunneling microscopy under ultrahigh vacuum to obtain the I-V response at a molecular level. The attenuation factor of the electron transfer through the hexadecapeptide was determined by applying the Simons model to the I-V response to show better molecular conductance of the hexadecapeptide than dodecanethiol. Chemical modification at the C-terminal of the hexadecapeptide with a ferrocene unit, on the other hand, brought about significant changes in the I-V response, where the helical peptide became more conductive at the negative bias voltage. The molecular rectification behavior is due to the ferrocene unit regulating the direction of the electron transfer at the metal-molecule junction.

Covalent biofunctionalization of silicon nitride surfaces

Covalently attached organic monolayers on etched silicon nitride (SixN4; x >/= 3) surfaces were prepared by reaction of SixN4-coated wafers with neat or solutions of 1-alkenes and 1-alkynes in refluxing mesitylene. The surface modification was monitored by measurement of the static water contact angle, XPS, IRRAS, AFM, and ToF-SIMS, and evidence for the formation of Si-C bonds is presented. The etching can be achieved by dilute HF solutions and yields both Si-H and N-H moieties. The resulting etched SixN4 surfaces are functionalized by terminal carboxylic acid groups in either of two ways: (a) via attachment of a 10-undecenoic acid 2,2,2-trifluoroethyl ester (trifluoro ethanol ester) and subsequent thermal acid hydrolysis; (b) through attachment of a photocleavable ester, and subsequent photochemical cleavage, as this would allow photopatterned functionalized SixN4. The carboxylic acids are successfully used for the attachment of oligopeptides (aspartame) and complete proteins using EDC/NHS chemistry. Finally, an amino-terminated organic monolayer can be formed by reaction of HF-treated SixN4 surfaces with a N-(omega-undecylenyl)phthalimide, which yields an amino-terminated surface upon deprotection with hydrazine.

Pervasive Seismic Wave Reflectivity and Metasomatism of the Tonga Mantle Wedge

Subduction zones play critical roles in the recycling of oceanic lithosphere and the generation of continental crust. Seismic imaging can reveal structures associated with key dynamic processes occurring in the upper-mantle wedge above the sinking oceanic slab. Three-dimensional images of reflecting interfaces throughout the upper-mantle wedge above the subducting Tonga slab were obtained by migration of teleseismic recordings of underside P- and S-wave reflections. Laterally continuous weak reflectors with tens of kilometers of topography were detected at depths near 90, 125, 200, 250, 300, 330, 390, 410, and 450 kilometers. P- and S-wave impedances decreased at the 330-kilometer and 450-kilometer reflectors, and S-wave impedance decreased near 200 kilometers in the vicinity of the slab and near 390 kilometers, just above the global 410-kilometer increase. The pervasive seismic reflectivity results from phase transitions and compositional zonation associated with extensive metasomatism involving slab-derived fluids rising through the wedge.

Molecular Electrodes at the Exposed Edge of Metal/Insulator/Metal Trilayer Structures

Producing reliable electrical contacts of molecular dimensions has been a critical challenge in the field of molecule-based electronics. Conventional thin film deposition and photolithography techniques have been utilized to construct novel nanometer-sized electrodes on the exposed vertical plane on the edge of a thin film multilayer structure (metal/insulator/metal). Via thiol surface attachment to metal leads, an array of paramagnetic, cyanide-bridged octametal complexes, [(pzTp)FeIII(CN)3]4[NiII(L)]4[O3SCF3]4 (1) [(pzTp) = tetra(pyrazol-1-yl)borate; L = 1-S(acetyl)tris(pyrazolyl)decane], were covalently linked onto the electrodes forming a dominant conduction pathway. A series of molecule-based devices were fabricated using Ni, NiFe, Ta, and Au as metal electrodes separated by insulating Al2O3 spacers, followed by treatment with 1. A series of control experiments were also performed to demonstrate that the conduction path was through tethered metal clusters. The molecular current was analyzed via the Simmons tunnel model, and calculations are consistent with electron tunneling through the alkane ethers to the central metal core. With a Ni/Al2O3/Au molecular electrode, the tether binding was found to be reversible to the top Au layer, allowing for a new class of chemical detection based on the steric bulk of coordinating analytes to disconnect the molecular current path. Simple and economical photolithography/liftoff/self-assembly fabrication techniques afford robust molecular junctions with high reproducibility (>90%) and long operational lifetimes (>1 year).

Conductivity in Alkylamine/Gold and Alkanethiol/Gold Molecular Junctions Measured in Molecule/Nanoparticle/Molecule Bridges and Conducting Probe Structures

Charge transport through alkane monolayers on gold is measured as a function of molecule length in a controlled ambient using a metal/molecule/nanoparticle bridge structure and compared for both thiol and amine molecular end groups. The current through molecules with an amine/gold junction is observed to be more than a factor of 10 larger than that measured in similar molecules with thiol/gold linkages. Conducting probe atomic force microscopy is also used to characterize the same monolayer systems, and the results are quantitatively consistent with those found in the nanoparticle bridge geometry. Scaling of the current with contact area is used to estimate that approximately 100 molecules are probed in the nanoparticle bridge geometry. For both molecular end groups, the room-temperature conductivity at low bias as a function of molecule length shows a reasonable fit to models of coherent nonresonant charge tunneling. The different conductivity is ascribed to differences in charge transfer and wave function mixing at the metal/molecule contact, including possible effects of amine group oxidation and molecular conformation. For the amine/Au contact, the nitrogen lone pair interaction with the gold results in a hybrid wave function directed along the molecule bond axis, whereas the thiol/Au contact leads to a more localized wave function.

Electronics and chemistry: varying single-molecule junction conductance using chemical substituents

We measure the low bias conductance of a series of substituted benzene diamine molecules while breaking a gold point contact in a solution of the molecules. Transport through these substituted benzenes is by means of nonresonant tunneling or superexchange, with the molecular junction conductance depending on the alignment of the metal Fermi level to the closest molecular level. Electron-donating substituents, which drive the occupied molecular orbitals up, increase the junction conductance, while electron-withdrawing substituents have the opposite effect. Thus for the measured series, conductance varies inversely with the calculated ionization potential of the molecules. These results reveal that the occupied states are closest to the gold Fermi energy, indicating that the tunneling transport through these molecules is analogous to hole tunneling through an insulating film.

Interfacial scattering at electrochemically fabricated atom-scale junctions between thin gold film electrodes in a microfluidic channel

Atom-scale junctions were formed between two Au thin-film electrodes by a combination of lithography, microfluidics, and electrochemistry. Two Au thin-film electrodes with a small (0.25-25 microm) gap between them were lithographically defined such that the gap fell in the center of a 100-microm-wide microfluidic channel in poly(dimethylsiloxane). Directional electrodeposition between the Au thin-film electrodes, accomplished by applying a potential between the thin-film electrodes, caused Au to etch from the anode and deposit on the cathode, thereby closing the gap. Current through the gap was monitored continuously, and the directional electrodeposition was terminated when a current near that corresponding to the conductance quantum, G(0) = 2e(2)/h, was reached. To regenerate the device, the atom-scale junction was broken with a potential sweep, the microfluidic channel was rinsed, and the junction was re-formed with a subsequent comparator-terminated directional electrodeposition. Alternating current impedance was measured while hexadecanethiol (HDT) was chemisorbed onto the atom-scale junction. The interfacial scattering from chemisorption of the Lewis base HDT on the atom-scale junction caused a normalized impedance change of 71 +/- 1%, the noise level being equivalent to a population fluctuation of five HDT molecules.

Shear velocity structure in the Aegean region obtained by joint inversion of Rayleigh and Love waves

We present a shear velocity model of the crust and uppermost mantle under the Aegean region by simultaneous inversion of Rayleigh and Love waves. The database consists of regional earthquakes recorded by portable broadband three-component digital stations that were installed for a period of 6 months in the broader Aegean region. For each epicentre–station ray path group velocity dispersion curves are measured using appropriate frequency time analysis (FTAN). The dispersion measurements for more than 600 Love wave paths have been used. We have also incorporated previous results forc. 700 Rayleigh wave paths for the study area. The single-path dispersion curves of both waves were inverted to regional group velocity maps for different values of period (6–32 s) via a tomographic method. The local dispersion curves of discrete grid points for both surface waves were inverted nonlinearly to construct 1D models of shear-wave velocity v. depth. In most cases the joint inversion of Rayleigh and Love waves resulted in a single model (from the multiple models compatible with the data) that could interpret both Rayleigh and Love wave data. Around 60 local dispersion curves for both Rayleigh and Love waves were finally jointly inverted. As expected, because of the complex tectonic environment of the Aegean region the results show strong lateral variations of the S-wave velocities for the crust and uppermost mantle. Our results confirm the presence of a thin crust typically less than 28–30 km in the whole Aegean Sea, which in some parts of the southern and central Aegean Sea becomes significantly thinner (20–22 km). In contrast, a large crustal thickness of about 40–45 km exists in western Greece, and the remaining part of continental Greece is characterized by a mean crustal thickness of about 35 km. A significant sub-Moho upper mantle low-velocity zone (LVLmantle) with velocities as low as 3.7 km s−1, is clearly identified in the southern and central Aegean Sea, correlated with the high heat flow in the mantle wedge above the subducted slab and the related active volcanism in the region. The results obtained results are compared with independent body-wave tomographic information on the velocity structure of the study area and exhibit a generally good agreement, although significant small-scale differences are also identified.

Role of Triple Bond in 1,2-Diphenylacetylene Crystal: A Combined Experimental and Theoretical Study

We have performed a combined experimental and theoretical study of the molecular system of 1,2-diphenylacetylene. The occurrence of two different geometries of the molecule in the crystal structure, one being planar and the other tilted by approximately 6 degrees , has been investigated in relation to the nature of the acetylenic linker. The experimental charge density analysis shows that the acetylenic linker exhibits a noncylindrical density reminiscent of the strong conjugation present in the molecule. The pi-orbitals of the acetylenic linker derived from density functional theory (DFT) calculations are found to sustain a variety of conjugation lengths between the phenyl rings, thereby giving flexibility to the molecule to arrange itself in various packing conformations in the crystal. It is interesting that the energy involved for such distortions is only kBT, allowing several polymorphic forms of the crystal structure as reported in the literature. The distortions entertained by the molecule and the corresponding changes in the charge density distribution and energy are all relevant to molecular electronics.

Electrical conductance of molecular junctions by a robust statistical analysis

We propose an objective and robust method to extract the electrical conductance of single molecules connected to metal electrodes from a set of measured conductance data. Our method roots in the physics of tunneling and is tested on octanedithiol using mechanically controllable break junctions. The single molecule conductance values can be deduced without the need for data selection.

Interpretation of stochastic events in single molecule conductance measurements

The electrical conductance of a series of thiol-terminated alkanes, (1,6-hexanedithiol (HDT), 1,8-octanedithiol (ODT), and 1,10-decanedithol (DDT)) was measured using a modified scanning tunneling microscope break junction technique. The interpretation of data obtained in this technique is complicated due to multiple effects such as microscopic details of the metal-molecule junctions, superposition of tunneling currents, and conformational changes in the molecules. A new method called the last-step analysis (LSA) is introduced here to clarify the contribution of these effects. In direct contrast to previous work, LSA does not require any data preselection, making the results less subjective and more reproducible. Finally, LSA was used to obtain the conductance of single molecules (HDT, (3.6 x 10(-4))G(o); ODT, (4.4 x 10(-5))G(o); DDT, (5.7 x 10(-6))G(o)). The tunneling decay parameter (beta) was calculated, and it was found to be approximately 1.0 per carbon atom.

Single-Molecule Charge-Transport Measurements that Reveal Technique-Dependent Perturbations

We compare scanning tunneling microscopy (STM) imaging with single-molecule conductive atomic force microscopy (C-AFM) measurements by probing a series of structurally related thiol-terminated oligo(phenylenevinylene)s (OPVs) designed to have unique charge-transport signatures. When one or two methylene spacers are inserted between the thiol points of attachment and the OPV core, a systematic reduction in the imaged molecular transconductance and the current transmitted through a metal-molecule-metal junction containing the molecule is observed, indicating good agreement between STM and C-AFM measurements. However, a structure where the OPV backbone is interrupted by a [2.2]paracyclophane core has a low molecular transconductance, as determined from STM images, and a high measured single-molecule conductance. This apparent disconnect can be understood by comparing the calculated molecular orbital topology of the OPV with one thiol bound to a gold surface (the geometry in the STM experiment) with the topology of the molecule with both thiol termini bound to gold (relevant to C-AFM). In the former case, a single contact splits low-lying molecular orbitals into two discrete fragments, and in the latter case, molecular orbitals that span the entire molecule are observed. Although the difference in observed conductance between the two different measurements is resolved, the overall set of observations highlights the importance of using combined techniques to better characterize charge-transport properties relevant to molecular electronics.

Contact formation dynamics: Mapping chemical bond formation between a molecule and a metallic probe

We present a study that maps out chemical bond formation between a Pt-inked probe and a single 1,3-cyclohexadiene (1,3-CHD) molecule on Si(100). By separating the mechanical and electronic contributions to the current during the approach to contact, we show that there are significant forces between the probe and the C=C of the molecule and we track the relaxation of the molecule, the emergence of a chemical bond feature in the LDOS, and the quenching of specific molecular vibrations during bond formation.

Adsorption of Benzene-1,4-dithiol on the Au(111) Surface and Its Possible Role in Molecular Conductance

It is a consensus in the field of molecular electronics that the transport of charge across a single molecule depends sensitively on the details of the interaction between the molecule and the metallic leads, such as the molecular orientation. To advance the design of complex molecular devices, it is crucial to have a detailed understanding of these many aspects that influence the electron transport. A simple system that has been used as a paradigm of the class of conjugated aryl molecules is the benzene-1,4-dithiol (BDT). However, we still do not have a full understanding of the BDT transport experiments. Usually the geometries considered in transport calculations assumed that the BDT was connected to the two Au leads via the S atoms, and that the molecule was either perpendicular or close to a perpendicular configuration relative to the Au surfaces. Using ab initio calculations, we show that, for an isolated molecule, the configuration with largest adsorption energy has the BDT phenyl ring closer to being parallel to the surface, and we then argue, based on nonequilibrium Green's function-density functional theory calculations, that, depending on the experimental procedure, this may be the relevant configuration to be used in the transport calculations.

Fabricating and controlling molecular self-organization at solid surfaces: studies by scanning tunneling microscopy

This account presents a summary of recent work describing the control and fabrication of self-organized molecular adlayers on solid substrates. These results demonstrate that molecules, under appropriate conditions, will self-organize into well-ordered monolayers on various solid surfaces. Using scanning tunneling microscopy (STM) to probe the structure of these molecular architectures, it is possible to determine the surface quality to single molecule resolution. The surface structures can be controlled by external stimuli such as electrode potential and UV-light. The ability to control how these adlayers form is important for constructing surface molecular architectures with useful properties.

Large-area nanoscale patterning: chemistry meets fabrication

This Account describes a new paradigm for large-area nanoscale patterning that combines bottom-up and top-down approaches, merging chemistry with fabrication. This hybrid strategy uses simple nanofabrication techniques to control the alignment, size, shape, and periodicity of nanopatterns and chemical methods to control their materials properties and crystallinity. These tools are highly flexible and can create surface-patterned nanostructures with unusual properties and free-standing nanostructures that are multifunctional and monodisperse. The unprecedented scientific and technological opportunities enabled by nanoscale patterning over wafer-sized areas are discussed.

Electron transport through a self-assembled monolayer of thiol-end-functionalized tetraphenylporphines and metal tetraphenylporphines

The monolayers of several thiol-end-functionalized tetraphenylphophines (SH-TPP) and metal tetraphenylporphines (SH-MTPP) were self-assembled on gold surfaces and identified by cyclic voltammetry (CV), electrochemical impedance spectroscopy, scanning electrochemical microscopy, and the contact angle. The CV peaks of the [Fe(CN)6]3-/ [Fe(CN)6]4- couple were used to identify the efficiency of electrons transferring through the self-assembled monolayer (SAM). The results suggested that SH-TPP and SH-MTPP could form high-quality SAMs on gold surfaces. The SAMs blocked electron transport from the gold electrode to solution. When the length of the thiol-end-link spacer (alkyl group) increased, the electron transport ability of the SAM decreased because of the increased insulator properties of the alkyl chain. With the insertion of metallic ions, the electron transport ability of the SAM of SH-MTPP increased compared to that of the SAM of SH-TPP, which was probably due to the fact that (i) the insertion of metallic ions changed the molecular structure and the molecular structure of SH-MTPP played an important role in electron transport through the SAM and (ii) the insertion of metallic ions increased the electron tunneling probability through the monolayer.

Neutral Complexes of First Row Transition Metals Bearing Unbound Thiocyanates and Their Assembly on Metallic Surfaces

A series of transition metal coordination complexes designed to assemble on gold surfaces was synthesized, their electronic structure and transitions analyzed, and their magnetic properties studied. By taking advantage of recently developed thiocyanate assembly protocols, these molecules were then assembled onto a gold surface, without the need for an inert atmosphere, to give a loosely packed monolayer. The assembled molecules exhibit properties similar to that of the bulk molecules, indicating little change in molecular structure outside of chemisorption.

Magnetoresistance of nanoscale molecular devices

Affecting the current through a molecular or nanoscale junction is usually done by a combination of bias and gate voltages. Magnetic fields are less studied because nanodevices can capture only low values of the magnetic flux. We review recent work done with the aim of finding the conditions for magnetic fields to significantly affect the conductance of such junctions. The basic idea is to create narrow tunneling resonances through a molecular ring-like structure that are highly sensitive to the magnetic field. We describe a computational method that allows us to examine atomistic models of such systems and discuss several specific examples of plausible systems, such as the quantum corral, carbon nanotubes, and polycyclic aromatic hydrocarbon molecules. A unique property of the magnetic field, namely, its ability to split degenerate levels on the ring, is shown to allow prototypes of interesting new nanoscale devices, such as the three-terminal parallel logic gate.

Conductance of Single Alkanedithiols: Conduction Mechanism and Effect of Molecule−Electrode Contacts

The conductance of single alkanedithiols covalently bound to gold electrodes has been studied by statistical analysis of repeatedly created molecular junctions. For each molecule, the conductance histogram reveals two sets of well-defined peaks, corresponding to two different conductance values. We have found that (1) both conductance values decrease exponentially with the molecular length with an identical decay constant, beta approximately equal to 0.84 A(-1), but with a factor of 5 difference in the prefactor of the exponential function. (2) The current-voltage curves of the two sets can be fit with the Simmons tunneling model. (3) Both conductance values are independent of temperature (between -5 and 60 degrees C) and the solvent. (4) Despite the difference in the conductance, the forces required to break the molecular junctions are the same, 1.5 nN. These observations lead us to believe that the conduction mechanism in alkanedithiols is due to electron tunneling or superexchange via the bonds along the molecules, and the two sets of conductance peaks are due to two different microscopic configurations of the molecule-electrode contacts.

Preparation of High Quality Electrical Insulator Self-Assembled Monolayers on Gold. Experimental Investigation of the Conduction Mechanism through Organic Thin Films

Self-assembled monolayers (SAMs) form highly ordered, stable dielectrics on conductive surfaces. Being able to attach larger-area contacts in a MIM (metal-insulator-metal) diode, their electrical properties can be determined. In this paper, the electrical conduction through thiolate SAMs of different alkyl chain lengths formed on gold surfaces were studied and discussed. The influence of the headgroup with respect to the surface quality and prevention of short circuits is investigated. Phenoxy terminated alkanethiols were found to form high quality SAMs with perfect insulating properties. Synthesis of the required terminally substituted long chain thiols have been developed. The I(V) characteristics of MIM structures formed with these SAMs are measured and simulated according to theoretical tunneling models for electrical conductivity through thin organic layers. SAM based electronic devices will become especially important for future nanoscale applications, where they can serve as insulators, gate dielectric of FETs, resistors, and capacitor structures.

Electron transfer in metal-molecule-metal junction composed of self-assembled monolayers of helical peptides carrying redox-active ferrocene units

Electronic properties of three kinds of helical peptides with or without redox-active ferrocene units were investigated by using scanning tunneling microscopy under ultrahigh vacuum. The currents through the helical peptides carrying ferrocene units at the molecular terminals became significantly larger than that through a reference peptide without any ferrocene units. On the other hand, ferrocene units in the middle of the peptide chain did not affect the current-voltage characteristics. These results indicate that the ferrocene units near the metal electrode should play an important role for efficient electron transfer between the metal and the peptide molecules, which process is one of the rate-determining steps for characterizing molecular conductance in metal-molecule-metal junction.

Covalent Attachment of a Transition Metal Coordination Complex to Functionalized Oligo(phenylene-ethynylene) Self-Assembled Monolayers

We have investigated the reaction of tetrakis(dimethylamido)titanium, Ti[N(CH(3))(2)](4), with N-isopropyl-N-[4-(thien-3-ylethynyl) phenyl] amine and N-isopropyl-N-(4-{[4-(thien-3-ylethynyl) phenyl]ethynyl}phenyl) amine self-assembled monolayers (SAMs), on polycrystalline Au substrates. The structure of the SAMs themselves has also been investigated. Both molecules form SAMs on polycrystalline Au bound by the thiophene group. The longer-molecular-backbone molecule forms a denser SAM, with molecules characterized by a smaller tilt angle. X-ray photoelectron spectroscopy (XPS) and angle-resolved XPS have been employed to examine the kinetics of adsorption, the spatial extent of reaction, and the stoichiometry of reaction. For both the SAMs, adsorption is described well by first-order Langmuirian kinetics, and adsorption is self-limiting from T(s) = -50 to 30 degrees C. The use of angle-resolved XPS clearly demonstrates that the Ti[N(CH(3))(2)](4) reacts exclusively with the isopropylamine end group via ligand exchange, and there is no penetration of the SAM, followed by reaction at the SAM-Au interface. Moreover, the SAM molecules remain bound to the Au surface via their thiopene functionalites. From XPS, we have found that, in both cases, approximately one Ti[N(CH(3))(2)](4) is adsorbed per two SAM molecules.

Single Polymer Chains as Specific Transducers of Molecular Recognition in Scanning Probe Microscopy

A new approach for the specific detection and mapping of single molecule recognition is presented, based on the nonlinear elastic behavior of a single polymer chain. The process of molecular recognition between a ligand and a receptor is inherently accompanied by a decrease in the translational and rotational degrees of freedom of the two molecules. We show that a polymeric tether linked to the ligand can effectively transduce the configurational constraint imposed by molecular recognition into a measurable force, which is dominated by the entropic elasticity of the polymer. This force is specifically characterized by a strong nonlinearity when the extension of the polymer approaches its contour length. Thus, a polymer chain tethering the ligand to an oscillating cantilevered tip gives rise to a highly anharmonic motion upon ligand-receptor binding. Higher-harmonics atomic force microscopy allows us to detect this phenomenon in real time as a specific signature for the probing and mapping of single-molecule recognition.

Electronic Structure and Electron Transport Characteristics of a Cobalt Complex

The molecular and electronic structures and electron transport characteristics of a Co complex are investigated using first principles calculations. The Co complex belongs to the D(2d) point group, and its two ligands are perpendicular to each other. The central atom Co forms a distorted octahedron with six donor N atoms. In a low oxidation state, the bond length between Co and pyrrole nitrogen, 1.849 A, is much shorter than the distance between Co and pyridine nitrogen, 2.168 A, while, in a high oxidation state, the bond length differences between Co and pyrrole nitrogen, 1.814 A, and between Co and pyridine nitrogen, 1.990 A, are not as large as those in the Co2+ complex. The HOMO energy of the low oxidation state is very close to the Fermi level of bulk Au, allowing hole creation in the molecule. On the other hand, the LUMO energy of the high oxidation state is close to the Au Fermi level, allowing a low barrier for electron injection from the Au cathode to the molecule. These structural characteristics make the Co complex a good hole-conduction molecule. The density of states, transmission probability, and I-V characteristics are evaluated using the Green function approach.

Single-molecule optoelectronics

With discrete states, several-atom Ag(n) nanoclusters exhibit molecule-like behavior with strong visible fluorescence and robust optical properties. This new class of single-molecule fluorophores has been created and electrically contacted in thin films to produce the first electroluminescent single molecules. A direct reporter of nanoscale charge injection and transport through discrete energy levels, bright Ag(n) electroluminescence has been harnessed to create single-molecule light-emitting diodes (LEDs) and optoelectronic logic gates and even to demonstrate full addition operations. These experiments utilizing the small size and quantum behavior of individual Ag nanoclusters usher in the new field of single-molecule optoelectronics.

A new phase of the c(4 x 2) superstructure of alkanethiols grown by vapor phase deposition on gold

A self-assembled monolayer of dodecanethiol is grown onto (111) oriented gold by vacuum phase deposition and studied by ultrahigh vacuum scanning tunneling microscopy (STM). The films consist of domains that exhibit the c(4 x 2) over-structure of the hexagonal (square root of 3 x square root of 3)R30 of alkanethiols on gold. The domain size is only limited by the terrace size of the underlying gold. By higher resolution scans a new phase of the c(4 x 2) structure consisting of four inequivalent molecules that display different heights in the STM images is discovered.

Nanowire lithography: fabricating controllable electrode gaps using Au-Ag-Au nanowires

A method to fabricate nanowire electrodes possessing controllable gaps is described. The method relies on electrochemical deposition and selective chemical etching or heating to selectively remove the Ag segment of Au-Ag-Au nanowires. Because the thickness of the Ag segment directly dictates the size of the nanogap, the gap width can be easily controlled during the nanowire fabrication process. Herein, we demonstrate gaps with 2 microm, 100 nm and 20 nm widths via the above-mentioned approaches. In addition, we observed that small gaps (approximately 20 nm) can be formed through annealing Au-Ag-Au nanowires at 200 degrees C in air. Electrical contact between nanowire electrodes and contact pads is studied. Using nanowire electrodes with a 100 nm gap, we subsequently fabricate organic field effect transistors (FETs) with regioregular poly(3-hexylthiophene).

Uncovering Transport Properties of 4,4‘-Bipyridine/Gold Molecular Nanobridges

Here, the fascinating connection between the chemical and the transport properties of recently fabricated 4,4'-bipyridine/gold nanobridges is addressed. By means of first-principles ab initio calculations, the remarkable reproducibility of the 4,4'-bipyridine conductance properties is explained as the combined result of (i) the bonding of the molecule to the metallic leads through hybridization between the 4,4'-bipyridine highest occupied molecular orbitals and lowest unoccupied molecular orbitals (LUMOs) with s and d orbitals at low-coordination gold atoms, (ii) the limited number of molecule-lead arrangements due to gold-hydrogen steric repulsions, and (iii) the electron transmission through a LUMO-derived resonance, whose positioning with respect to the Fermi level determines which of the above arrangements yields nonnegligible conductance. Structural and electronic interpretations to the stepped dependence reported for the electronic transport of 4,4'-bipyridine as a function of the distance between the gold tips are also given.

Monolayer Structures of Highly Photoluminescent Furan Oligoaryls: An Approach to Improve Packing Crystallinity of Dithiolated Aromatics

We demonstrated that mono- and dithiolated furan-containing oligoaryls (II-IV, see Chart 2) can be successfully synthesized via a one-pot strategy starting from propargylic dithioacetals. IRAS (infrared reflection-absorption spectroscopy) and STM (scanning tunneling microscopy) experiments revealed that single-component monolayers of II, III, and IV are essentially disordered, an important property that prevents excited photoluminescent molecules from self-quenching in the organic layers of an OLED device. Surprisingly, localized lattice packing of crystalline dithiolated furan oligoaryls on Au(111) can be assembled by immersing preadsorbed n-dodecanethiol SAMs in the corresponding deposition solutions. The discrepancy in the formation of disordered or localized crystalline structures is discussed. For single-component monolayers, the facile formation of S-Au bonds generates chaotically distributed monolayers in which the arched molecules hinge each other and block the desorptive pathways. The absence of crystalline packing is mainly attributed to the difficulty for the dithiols to simultaneously break two S-Au bonds, to desorb, and then to readsorb, the key step to improve the intermolecular attractions for crystalline SAMs. By preassembling n-dodecanethiol SAMs, the space for dithiolated compounds III and IV to adsorb is limited to domain boundaries or packing defects where crystalline packing of III and IV can grow.

Studying and Switching Electron Transfer: From the Ensemble to the Single Molecule

We report here on the systematic investigation of photoinduced intramolecular electron transfer (IET) in a series of donor-bridge-acceptor molecules as a means of understanding electron transport through the bridge. Perylenebisimide chromophores connected by various oligophenylene bridges are studied because their electron-transfer behavior can readily be monitored by following changes in the fluorescence intensity. We find dramatic switching of the IET behavior as the solvent polarity (dielectric constant) is increased. By combining steady-state and time-resolved fluorescence spectroscopy in a variety of solvents at multiple temperatures with standard theories of electron transfer, we determine parameters governing the IET behavior of these dimers, such as the electronic coupling through the bridges. We also deploy available ab initio quantum chemical methods to calculate the through-space component of the electronic coupling matrix element. Single-molecule investigations of the electron-transfer behavior also show that IET can be switched reversibly by a similar mechanism in an isolated individual molecule.

Molecular Conductance: Chemical Trends of Anchoring Groups

Combining density functional theory calculations for molecular electronic structure with a Green function method for electron transport, we calculate from first principles the molecular conductance of benzene connected to two Au leads through different anchoring atoms-S, Se, and Te. The relaxed atomic structure of the contact, different lead orientations, and different adsorption sites are fully considered. We find that the molecule-lead coupling, electron transfer, and conductance all depend strongly on the adsorption site, lead orientation, and local contact atomic configuration. For flat contacts the conductance decreases as the atomic number of the anchoring atom increases, regardless of the adsorption site, lead orientation, or bias. For small bias this chemical trend is, however, dependent on the contact atomic configuration: an additional Au atom at the contact with the (111) lead changes the best anchoring atom from S to Se, although for large bias the original chemical trend is recovered.

Chemical reactions with upright monolayers of cruciform pi-systems

The study below details the synthesis and self-assembly of new cruciform pi-systems and their in situ chemical reactions in monolayer films. Analysis of the packing in the crystal structure of one of these unusually shaped molecules reveals that the terphenyl arm, which is twisted out of conjugation, makes edge-to-face contact with neighboring molecules aligning the conjugated bisoxazole arms in rows. In self-assembled monolayers on metal surfaces, these cruciform pi-systems present reactive groups at the film/air interface. Films that present aldehyde functionality react with aromatic anilines to give surface-bound imines. Dimers that are >4.5 nm in length and contain a conjugated imine linkage can be made in situ on gold substrates through this strategy.

Length-Dependent Transport in Molecular Junctions Based on SAMs of Alkanethiols and Alkanedithiols: Effect of Metal Work Function and Applied Bias on Tunneling Efficiency and Contact Resistance

Nanoscopic tunnel junctions were formed by contacting Au-, Pt-, or Ag-coated atomic force microscopy (AFM) tips to self-assembled monolayers (SAMs) of alkanethiol or alkanedithiol molecules on polycrystalline Au, Pt, or Ag substrates. Current-voltage traces exhibited sigmoidal behavior and an exponential attenuation with molecular length, characteristic of nonresonant tunneling. The length-dependent decay parameter, beta, was found to be approximately 1.1 per carbon atom (C(-1)) or 0.88 A(-)(1) and was independent of applied bias (over a voltage range of +/-1.5 V) and electrode work function. In contrast, the contact resistance, R(0), extrapolated from resistance versus molecular length plots showed a notable decrease with both applied bias and increasing electrode work function. The doubly bound alkanedithiol junctions were observed to have a contact resistance approximately 1 to 2 orders of magnitude lower than the singly bound alkanethiol junctions. However, both alkanethiol and dithiol junctions exhibited the same length dependence (beta value). The resistance versus length data were also used to calculate transmission values for each type of contact (e.g., Au-S-C, Au/CH(3), etc.) and the transmission per C-C bond (T(C)(-)()(C)).