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Gong L, Holbourn A, Kuhnt W, Opdyke B, Zhang Y, Ravelo AC, Zhang P, Xu J, Matsuzaki K, Aiello I, Beil S, Andersen N. Middle Pleistocene re-organization of Australian Monsoon. Nat Commun 2023; 14:2002. [PMID: 37037802 PMCID: PMC10086051 DOI: 10.1038/s41467-023-37639-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2022] [Accepted: 03/24/2023] [Indexed: 04/12/2023] Open
Abstract
The sensitivity of the Australian Monsoon to changing climate boundary conditions remains controversial due to limited understanding of forcing processes and past variability. Here, we reconstruct austral summer monsoonal discharge and wind-driven winter productivity across the Middle Pleistocene Transition (MPT) in a sediment sequence drilled off NW Australia. We show that monsoonal precipitation and runoff primarily responded to precessional insolation forcing until ~0.95 Ma, but exhibited heightened sensitivity to ice volume and pCO2 related feedbacks following intensification of glacial-interglacial cycles. Our records further suggest that summer monsoon variability at the precessional band was closely tied to the thermal evolution of the Indo-Pacific Warm Pool and strength of the Walker circulation over the past ~1.6 Myr. By contrast, productivity proxy records consistently tracked glacial-interglacial variability, reflecting changing rhythms in polar ice fluctuations and Hadley circulation strength. We conclude that the Australian Monsoon underwent a major re-organization across the MPT and that extratropical feedbacks were instrumental in driving short- and long-term variability.
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Affiliation(s)
- Li Gong
- Institute of Geosciences, Christian-Albrechts-University, D-24118, Kiel, Germany
| | - Ann Holbourn
- Institute of Geosciences, Christian-Albrechts-University, D-24118, Kiel, Germany.
| | - Wolfgang Kuhnt
- Institute of Geosciences, Christian-Albrechts-University, D-24118, Kiel, Germany
| | - Bradley Opdyke
- Research School of Earth Sciences, Australian National University, Mills Road, Acton, ACT, 2601, Australia
| | - Yan Zhang
- Ocean Sciences Department, University of California, 1156 High Street, Santa Cruz, CA, 95064, USA
| | - Ana Christina Ravelo
- Ocean Sciences Department, University of California, 1156 High Street, Santa Cruz, CA, 95064, USA
| | - Peng Zhang
- Institute of Cenozoic Geology and Environment, State Key Laboratory of Continental Dynamics and Department of Geology, Northwest University, 710069, Xi'an, China
| | - Jian Xu
- Institute of Cenozoic Geology and Environment, State Key Laboratory of Continental Dynamics and Department of Geology, Northwest University, 710069, Xi'an, China
| | - Kenji Matsuzaki
- Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa, Chiba, 277-8564, Japan
- Department of Earth and Planetary Science, Graduate School of Science, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Ivano Aiello
- Department of Geological Oceanography, Moss Landing Marine Laboratories, San Jose State University, Moss Landing, CA, 95039, USA
| | - Sebastian Beil
- Institute of Geosciences, Christian-Albrechts-University, D-24118, Kiel, Germany
| | - Nils Andersen
- Leibniz Laboratory for Radiometric Dating and Stable Isotope Research, Christian-Albrechts-University Kiel, D-24118, Kiel, Germany
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Yakupova A, Tomarovsky A, Totikov A, Beklemisheva V, Logacheva M, Perelman PL, Komissarov A, Dobrynin P, Krasheninnikova K, Tamazian G, Serdyukova NA, Rayko M, Bulyonkova T, Cherkasov N, Pylev V, Peterfeld V, Penin A, Balanovska E, Lapidus A, OBrien SJ, Graphodatsky A, Koepfli KP, Kliver S. Chromosome-Length Assembly of the Baikal Seal (Pusa sibirica) Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal. Genes (Basel) 2023; 14:genes14030619. [PMID: 36980891 PMCID: PMC10048373 DOI: 10.3390/genes14030619] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 01/31/2023] [Accepted: 02/24/2023] [Indexed: 03/05/2023] Open
Abstract
Pusa sibirica, the Baikal seal, is the only extant, exclusively freshwater, pinniped species. The pending issue is, how and when they reached their current habitat—the rift lake Baikal, more than three thousand kilometers away from the Arctic Ocean. To explore the demographic history and genetic diversity of this species, we generated a de novo chromosome-length assembly, and compared it with three closely related marine pinniped species. Multiple whole genome alignment of the four species compared with their karyotypes showed high conservation of chromosomal features, except for three large inversions on chromosome VI. We found the mean heterozygosity of the studied Baikal seal individuals was relatively low (0.61 SNPs/kbp), but comparable to other analyzed pinniped samples. Demographic reconstruction of seals revealed differing trajectories, yet remarkable variations in Ne occurred during approximately the same time periods. The Baikal seal showed a significantly more severe decline relative to other species. This could be due to the difference in environmental conditions encountered by the earlier populations of Baikal seals, as ice sheets changed during glacial–interglacial cycles. We connect this period to the time of migration to Lake Baikal, which occurred ~3–0.3 Mya, after which the population stabilized, indicating balanced habitat conditions.
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Affiliation(s)
- Aliya Yakupova
- Computer Technologies Laboratory, ITMO University, 19701 Saint Petersburg, Russia
- Correspondence: (A.Y.); (A.G.)
| | - Andrey Tomarovsky
- Computer Technologies Laboratory, ITMO University, 19701 Saint Petersburg, Russia
- Department of Natural Sciences, Novosibirsk State University, 630090 Novosibirsk, Russia
- Department of the Diversity and Evolution of Genomes, Institute of Molecular and Cellular Biology SB RAS, 630090 Novosibirsk, Russia
| | - Azamat Totikov
- Computer Technologies Laboratory, ITMO University, 19701 Saint Petersburg, Russia
- Department of Natural Sciences, Novosibirsk State University, 630090 Novosibirsk, Russia
- Department of the Diversity and Evolution of Genomes, Institute of Molecular and Cellular Biology SB RAS, 630090 Novosibirsk, Russia
| | - Violetta Beklemisheva
- Department of the Diversity and Evolution of Genomes, Institute of Molecular and Cellular Biology SB RAS, 630090 Novosibirsk, Russia
| | - Maria Logacheva
- Skolkovo Institute of Science and Technology, 121205 Moscow, Russia
| | - Polina L. Perelman
- Department of the Diversity and Evolution of Genomes, Institute of Molecular and Cellular Biology SB RAS, 630090 Novosibirsk, Russia
| | - Aleksey Komissarov
- Applied Genomics Laboratory, SCAMT Institute, ITMO University, 9 Ulitsa Lomonosova, 191002 Saint Petersburg, Russia
| | - Pavel Dobrynin
- Computer Technologies Laboratory, ITMO University, 19701 Saint Petersburg, Russia
- Human Genetics Laboratory, Vavilov Institute of General Genetics RAS, 119991 Moscow, Russia
| | | | - Gaik Tamazian
- Centre for Computational Biology, Peter the Great Saint Petersburg Polytechnic University, 195251 St. Petersburg, Russia
| | - Natalia A. Serdyukova
- Department of the Diversity and Evolution of Genomes, Institute of Molecular and Cellular Biology SB RAS, 630090 Novosibirsk, Russia
| | - Mike Rayko
- Center for Bioinformatics and Algorithmic Biotechnology, St. Petersburg State University, 199034 St. Petersburg, Russia
| | - Tatiana Bulyonkova
- Laboratory of Mixed Computations, A.P. Ershov Institute of Informatics Systems SB RAS, 630090 Novosibirsk, Russia
| | - Nikolay Cherkasov
- Centre for Computational Biology, Peter the Great Saint Petersburg Polytechnic University, 195251 St. Petersburg, Russia
| | - Vladimir Pylev
- Laboratory of Human Population Genetics, Research Centre for Medical Genetics, 115522 Moscow, Russia
| | - Vladimir Peterfeld
- Baikal Branch of State Research and Industrial Center of Fisheries, 670034 Ulan-Ude, Russia
| | - Aleksey Penin
- Institute for Information Transmission Problems of the Russian Academy of Sciences, 127051 Moscow, Russia
| | - Elena Balanovska
- Laboratory of Human Population Genetics, Research Centre for Medical Genetics, 115522 Moscow, Russia
| | - Alla Lapidus
- Center for Bioinformatics and Algorithmic Biotechnology, St. Petersburg State University, 199034 St. Petersburg, Russia
| | - DNA Zoo Consortium
- The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA
| | - Stephen J. OBrien
- Guy Harvey Oceanographic Center, Halmos College of Arts and Sciences, NOVA Southeastern University, Fort Lauderdale, FL 33004, USA
| | - Alexander Graphodatsky
- Department of the Diversity and Evolution of Genomes, Institute of Molecular and Cellular Biology SB RAS, 630090 Novosibirsk, Russia
- Correspondence: (A.Y.); (A.G.)
| | - Klaus-Peter Koepfli
- Smithsonian-Mason School of Conservation, George Mason University, 1500 Remount Road, Front Royal, VA 22630, USA
- Center for Species Survival, Smithsonian’s National Zoo and Conservation Biology Institute, 1500 Remount Road, Front Royal, VA 22630, USA
| | - Sergei Kliver
- Center for Evolutionary Hologenomics, The Globe Institute, The University of Copenhagen, 5A, Oester Farimagsgade, 1353 Copenhagen, Denmark
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3
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Shackleton JD, Follows MJ, Thomas PJ, Omta AW. The Mid-Pleistocene Transition: a delayed response to an increasing positive feedback? CLIMATE DYNAMICS 2022; 60:4083-4098. [PMID: 37292246 PMCID: PMC10244291 DOI: 10.1007/s00382-022-06544-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Accepted: 10/14/2022] [Indexed: 06/10/2023]
Abstract
Glacial-interglacial cycles constitute large natural variations in Earth's climate. The Mid-Pleistocene Transition (MPT) marks a shift of the dominant periodicity of these climate cycles from ∼ 40 to ∼ 100 kyr. Recently, it has been suggested that this shift resulted from a gradual increase in the internal period (or equivalently, a decrease in the natural frequency) of the system. As a result, the system would then have locked to ever higher multiples of the external forcing period. We find that the internal period is sensitive to the strength of positive feedbacks in the climate system. Using a carbon cycle model in which feedbacks between calcifier populations and ocean alkalinity mediate atmospheric CO2 , we simulate stepwise periodicity changes similar to the MPT through such a mechanism. Due to the internal dynamics of the system, the periodicity shift occurs up to millions of years after the change in the feedback strength is imposed. This suggests that the cause for the MPT may have occurred a significant time before the observed periodicity shift.
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Affiliation(s)
- J. D. Shackleton
- Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | - M. J. Follows
- Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139 USA
| | - P. J. Thomas
- Department of Mathematics, Applied Mathematics and Statistics, Case Western Reserve University, Cleveland, OH 44106 USA
| | - A. W. Omta
- Department of Earth, Environmental, and Planetary Sciences, Case Western Reserve University, Cleveland, OH 44106 USA
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4
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Abstract
The widely accepted “Milankovitch theory” explains insolation-induced waxing and waning of the ice sheets and their effect on the global climate on orbital timescales. In the past half century, however, the theory has often come under scrutiny, especially regarding its “100-ka problem.” Another drawback, but the one that has received less attention, is the “monsoon problem,” which pertains to the exclusion of monsoon dynamics in classic Milankovitch theory even though the monsoon prevails over the vast low-latitude (∼30° N to ∼30° S) region that covers half of the Earth’s surface and receives the bulk of solar radiation. In this review, we discuss the major issues with the current form of Milankovitch theory and the progress made at the research forefront. We suggest shifting the emphasis from the ultimate outcomes of the ice volume to the causal relationship between changes in northern high-latitude insolation and ice age termination events (or ice sheet melting rate) to help reconcile the classic “100-ka problem.” We discuss the discrepancies associated with the characterization of monsoon dynamics, particularly the so-called “sea-land precession-phase paradox” and the “Chinese 100-ka problem.” We suggest that many of these discrepancies are superficial and can be resolved by applying a holistic “monsoon system science” approach. Finally, we propose blending the conventional Kutzbach orbital monsoon hypothesis, which calls for summer insolation forcing of monsoons, with Milankovitch theory to formulate a combined “Milankovitch-Kutzbach hypothesis” that can potentially explain the dual nature of orbital hydrodynamics of the ice sheet and monsoon systems, as well as their interplays and respective relationships with the northern high-latitude insolation and inter-tropical insolation differential. Orbital-scale climate variations of Earth are dictated by ice sheet and monsoon Views of “monsoon system science” reinforce the Kutzbach monsoon hypothesis A unified Milankovitch-Kutzbach hypothesis better explains the orbital dual nature
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5
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Thomas NC, Bradbury HJ, Hodell DA. Changes in North Atlantic deep-water oxygenation across the Middle Pleistocene Transition. Science 2022; 377:654-659. [PMID: 35926027 DOI: 10.1126/science.abj7761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
The oxygen concentrations of oceanic deep-water and atmospheric carbon dioxide (pCO2) are intrinsically linked through organic carbon remineralization and storage as dissolved inorganic carbon in the deep sea. We present a high-resolution reconstruction of relative changes in oxygen concentration in the deep North Atlantic for the past 1.5 million years using the carbon isotope gradient between epifaunal and infaunal benthic foraminifera species as a proxy for paleo-oxygen. We report a significant (>40 micromole per kilogram) reduction in glacial Atlantic deep-water oxygenation at ~960 thousand to 900 thousand years ago that coincided with increased continental ice volume and a major change in ocean thermohaline circulation. Paleo-oxygen results support a scenario of decreasing deep-water oxygen concentrations, increased respired carbon storage, and a reduction in glacial pCO2 across the Middle Pleistocene Transition.
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Affiliation(s)
- Nicola C Thomas
- Department of Earth Science, University of Cambridge, Cambridge, UK
| | | | - David A Hodell
- Department of Earth Science, University of Cambridge, Cambridge, UK
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6
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Rapid northern hemisphere ice sheet melting during the penultimate deglaciation. Nat Commun 2022; 13:3819. [PMID: 35780147 PMCID: PMC9250507 DOI: 10.1038/s41467-022-31619-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Accepted: 06/27/2022] [Indexed: 11/17/2022] Open
Abstract
The rate and consequences of future high latitude ice sheet retreat remain a major concern given ongoing anthropogenic warming. Here, new precisely dated stalagmite data from NW Iberia provide the first direct, high-resolution records of periods of rapid melting of Northern Hemisphere ice sheets during the penultimate deglaciation. These records reveal the penultimate deglaciation initiated with rapid century-scale meltwater pulses which subsequently trigger abrupt coolings of air temperature in NW Iberia consistent with freshwater-induced AMOC slowdowns. The first of these AMOC slowdowns, 600-year duration, was shorter than Heinrich 1 of the last deglaciation. Although similar insolation forcing initiated the last two deglaciations, the more rapid and sustained rate of freshening in the eastern North Atlantic penultimate deglaciation likely reflects a larger volume of ice stored in the marine-based Eurasian Ice sheet during the penultimate glacial in contrast to the land-based ice sheet on North America as during the last glacial. Stalagmites from NW Iberia record the rapid demise of large ice sheets during the penultimate deglaciation, and reveal decadal-scale feedbacks between warming and ice melting.
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7
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Loskutov E, Vdovin V, Klinshov V, Gavrilov A, Mukhin D, Feigin A. Applying interval stability concept to empirical model of middle Pleistocene transition. CHAOS (WOODBURY, N.Y.) 2022; 32:021103. [PMID: 35232038 DOI: 10.1063/5.0079963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Accepted: 01/20/2022] [Indexed: 06/14/2023]
Abstract
Interval stability is a novel method for the study of complex dynamical systems, allowing for the estimation of their stability to strong perturbations. This method describes how large perturbation should be to disrupt the stable dynamical regime of the system (attractor). In our work, interval stability is used for the first time to study the properties of a real natural system: to analyze the stability of the earth's climate system during the last 2.6×106 years. The main abrupt shift in global climate during this period is the middle Pleistocene transition (MPT), which occurred about 1×106 years ago as a change of the periodicity of glacial cycles from 41 to 100 kyr. On the basis of the empirical nonlinear stochastic model proposed in our recent work, we demonstrate that the global climate stability to any perturbations decreases throughout the Pleistocene period (including the MPT), enhancing its response to fast (with a millennial scale or less) internal disturbances.
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Affiliation(s)
- E Loskutov
- Institute of Applied Physics of the Russian Academy of Sciences (IAP RAS), Nizhny Novgorod 603950, Russia
| | - V Vdovin
- Institute of Applied Physics of the Russian Academy of Sciences (IAP RAS), Nizhny Novgorod 603950, Russia
| | - V Klinshov
- Institute of Applied Physics of the Russian Academy of Sciences (IAP RAS), Nizhny Novgorod 603950, Russia
| | - A Gavrilov
- Institute of Applied Physics of the Russian Academy of Sciences (IAP RAS), Nizhny Novgorod 603950, Russia
| | - D Mukhin
- Institute of Applied Physics of the Russian Academy of Sciences (IAP RAS), Nizhny Novgorod 603950, Russia
| | - A Feigin
- Institute of Applied Physics of the Russian Academy of Sciences (IAP RAS), Nizhny Novgorod 603950, Russia
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8
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Speleothem Records of the Hydroclimate Variability throughout the Last Glacial Cycle from Manita peć Cave (Velebit Mountain, Croatia). GEOSCIENCES 2021. [DOI: 10.3390/geosciences11080347] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
We present stable carbon (δ13C) and oxygen (δ18O) isotope records from two partially coeval speleothems from Manita peć Cave, Croatia. The cave is located close to the Adriatic coast (3.7 km) at an elevation of 570 m a.s.l. The site experienced competing Mediterranean and continental climate influences throughout the last glacial cycle and was situated close to the ice limit during the glacial phases. U-Th dating constrains the growth history from Marine Isotope Stage (MIS) 5 to MIS 3 and the transition from MIS 2 to MIS 1. 14C dating was used to estimate the age of the youngest part of one stalagmite found to be rich in detrital thorium and thus undatable by U-Th. On a millennial scale, δ18O variations partly mimic the Dansgaard–Oeschger interstadials recorded in Greenland ice cores (Greenland Interstadials, GI) from GI 22 to GI 13. We interpret our δ18O record as a proxy for variations in precipitation amount and/or moisture sources, and the δ13C record is interpreted as a proxy for changes in soil bioproductivity. The latter indicates a generally reduced vegetation cover towards MIS 3–MIS 4, with shifts of ~8‰ and approaching values close to those of the host rock. However, even during the coldest phases, when a periglacial setting and enhanced aridity sustained long-residence-time groundwater, carbonic-acid dissolution remains the driving force of the karstification processes. Speleothem morphology follows changes in environmental conditions and complements regional results of submerged speleothems findings. Specifically, narrow sections of light porous spelaean calcite precipitated during the glacial/stadial sea-level lowstands, while the warmer and wetter conditions were marked with compact calcite and hiatuses in submerged speleothems due to sea-level highstands. Presumably, the transformation of this littoral site to a continental one with somewhat higher amounts of orographic precipitation was a site-specific effect that masked regional environmental changes.
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9
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Barker S, Knorr G. Millennial scale feedbacks determine the shape and rapidity of glacial termination. Nat Commun 2021; 12:2273. [PMID: 33859188 PMCID: PMC8050095 DOI: 10.1038/s41467-021-22388-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Accepted: 03/11/2021] [Indexed: 11/08/2022] Open
Abstract
Within the Late Pleistocene, terminations describe the major transitions marking the end of glacial cycles. While it is established that abrupt shifts in the ocean/atmosphere system are a ubiquitous component of deglaciation, significant uncertainties remain concerning their specific role and the likelihood that terminations may be interrupted by large-amplitude abrupt oscillations. In this perspective we address these uncertainties in the light of recent developments in the understanding of glacial terminations as the ultimate interaction between millennial and orbital timescale variability. Innovations in numerical climate simulation and new geologic records allow us to highlight new avenues of research and identify key remaining uncertainties such as sea-level variability.
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Affiliation(s)
- Stephen Barker
- School of Earth and Environmental Sciences, Cardiff University, Cardiff, UK.
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10
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Kozlov E, Shidlovskii YV, Gilmutdinov R, Schedl P, Zhukova M. The role of CPEB family proteins in the nervous system function in the norm and pathology. Cell Biosci 2021; 11:64. [PMID: 33789753 PMCID: PMC8011179 DOI: 10.1186/s13578-021-00577-6] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2021] [Accepted: 03/19/2021] [Indexed: 12/29/2022] Open
Abstract
Posttranscriptional gene regulation includes mRNA transport, localization, translation, and regulation of mRNA stability. CPEB (cytoplasmic polyadenylation element binding) family proteins bind to specific sites within the 3′-untranslated region and mediate poly- and deadenylation of transcripts, activating or repressing protein synthesis. As part of ribonucleoprotein complexes, the CPEB proteins participate in mRNA transport and localization to different sub-cellular compartments. The CPEB proteins are evolutionarily conserved and have similar functions in vertebrates and invertebrates. In the nervous system, the CPEB proteins are involved in cell division, neural development, learning, and memory. Here we consider the functional features of these proteins in the nervous system of phylogenetically distant organisms: Drosophila, a well-studied model, and mammals. Disruption of the CPEB proteins functioning is associated with various pathologies, such as autism spectrum disorder and brain cancer. At the same time, CPEB gene regulation can provide for a recovery of the brain function in patients with fragile X syndrome and Huntington's disease, making the CPEB genes promising targets for gene therapy.
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Affiliation(s)
- Eugene Kozlov
- Laboratory of Gene Expression Regulation in Development, Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia, 119334
| | - Yulii V Shidlovskii
- Laboratory of Gene Expression Regulation in Development, Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia, 119334.,Department of Biology and General Genetics, Sechenov First Moscow State Medical University (Sechenov University), Moscow, Russia, 119992
| | - Rudolf Gilmutdinov
- Laboratory of Gene Expression Regulation in Development, Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia, 119334
| | - Paul Schedl
- Laboratory of Gene Expression Regulation in Development, Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia, 119334.,Department of Molecular Biology, Princeton University, Princeton, NJ, 08544-1014, USA
| | - Mariya Zhukova
- Laboratory of Gene Expression Regulation in Development, Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia, 119334.
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11
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Roselli C, Ramaswami M, Boto T, Cervantes-Sandoval I. The Making of Long-Lasting Memories: A Fruit Fly Perspective. Front Behav Neurosci 2021; 15:662129. [PMID: 33859556 PMCID: PMC8042140 DOI: 10.3389/fnbeh.2021.662129] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Accepted: 03/08/2021] [Indexed: 11/25/2022] Open
Abstract
Understanding the nature of the molecular mechanisms underlying memory formation, consolidation, and forgetting are some of the fascinating questions in modern neuroscience. The encoding, stabilization and elimination of memories, rely on the structural reorganization of synapses. These changes will enable the facilitation or depression of neural activity in response to the acquisition of new information. In other words, these changes affect the weight of specific nodes within a neural network. We know that these plastic reorganizations require de novo protein synthesis in the context of Long-term memory (LTM). This process depends on neural activity triggered by the learned experience. The use of model organisms like Drosophila melanogaster has been proven essential for advancing our knowledge in the field of neuroscience. Flies offer an optimal combination of a more straightforward nervous system, composed of a limited number of cells, and while still displaying complex behaviors. Studies in Drosophila neuroscience, which expanded over several decades, have been critical for understanding the cellular and molecular mechanisms leading to the synaptic and behavioral plasticity occurring in the context of learning and memory. This is possible thanks to sophisticated technical approaches that enable precise control of gene expression in the fruit fly as well as neural manipulation, like chemogenetics, thermogenetics, or optogenetics. The search for the identity of genes expressed as a result of memory acquisition has been an active interest since the origins of behavioral genetics. From screenings of more or less specific candidates to broader studies based on transcriptome analysis, our understanding of the genetic control behind LTM has expanded exponentially in the past years. Here we review recent literature regarding how the formation of memories induces a rapid, extensive and, in many cases, transient wave of transcriptional activity. After a consolidation period, transcriptome changes seem more stable and likely represent the synthesis of new proteins. The complexity of the circuitry involved in memory formation and consolidation is such that there are localized changes in neural activity, both regarding temporal dynamics and the nature of neurons and subcellular locations affected, hence inducing specific temporal and localized changes in protein expression. Different types of neurons are recruited at different times into memory traces. In LTM, the synthesis of new proteins is required in specific subsets of cells. This de novo translation can take place in the somatic cytoplasm and/or locally in distinct zones of compartmentalized synaptic activity, depending on the nature of the proteins and the plasticity-inducing processes that occur. We will also review recent advances in understanding how localized changes are confined to the relevant synapse. These recent studies have led to exciting discoveries regarding proteins that were not previously involved in learning and memory processes. This invaluable information will lead to future functional studies on the roles that hundreds of new molecular actors play in modulating neural activity.
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Affiliation(s)
- Camilla Roselli
- Trinity College Institute of Neuroscience, School of Genetics and Microbiology, Smurfit Institute of Genetics and School of Natural Sciences, Trinity College Dublin, Dublin, Ireland
| | - Mani Ramaswami
- Trinity College Institute of Neuroscience, School of Genetics and Microbiology, Smurfit Institute of Genetics and School of Natural Sciences, Trinity College Dublin, Dublin, Ireland.,National Centre for Biological Sciences, TIFR, Bengaluru, India
| | - Tamara Boto
- Trinity College Institute of Neuroscience, Department of Physiology, School of Medicine, Trinity College Dublin, Dublin, Ireland
| | - Isaac Cervantes-Sandoval
- Department of Biology, Georgetown University, Washington, DC, United States.,Interdisciplinary Program in Neuroscience, Georgetown University, Washington, DC, United States
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12
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Drysdale R, Couchoud I, Zanchetta G, Isola I, Regattieri E, Hellstrom J, Govin A, Tzedakis PC, Ireland T, Corrick E, Greig A, Wong H, Piccini L, Holden P, Woodhead J. Magnesium in subaqueous speleothems as a potential palaeotemperature proxy. Nat Commun 2020; 11:5027. [PMID: 33024094 PMCID: PMC7538886 DOI: 10.1038/s41467-020-18083-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Accepted: 08/01/2020] [Indexed: 11/09/2022] Open
Abstract
Few palaeoclimate archives beyond the polar regions preserve continuous and datable palaeotemperature proxy time series over multiple glacial-interglacial cycles. This hampers efforts to develop a more coherent picture of global patterns of past temperatures. Here we show that Mg concentrations in a subaqueous speleothem from an Italian cave track regional sea-surface temperatures over the last 350,000 years. The Mg shows higher values during warm climate intervals and converse patterns during cold climate stages. In contrast to previous studies, this implicates temperature, not rainfall, as the principal driver of Mg variability. The depositional setting of the speleothem gives rise to Mg partition coefficients that are more temperature dependent than other calcites, enabling the effect of temperature change on Mg partitioning to greatly exceed the effects of changes in source-water Mg/Ca. Subaqueous speleothems from similar deep-cave environments should be capable of providing palaeotemperature information over multiple glacial-interglacial cycles. Few palaeoclimate archives beyond the polar regions preserve continuous and datable paleotemperature proxy time series over multiple glacial-interglacial cycles. Here, the authors show that Mg concentrations in a subaqueous speleothem from an Italian cave track regional sea-surface temperatures over the last 350,000 years.
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Affiliation(s)
- Russell Drysdale
- School of Geography, The University of Melbourne, Parkville, 3010, VIC, Australia. .,Laboratoire EDYTEM, UMR CNRS 5204, Université Savoie Mont Blanc, 73376, Le Bourget-du-Lac cedex, France.
| | - Isabelle Couchoud
- School of Geography, The University of Melbourne, Parkville, 3010, VIC, Australia.,Laboratoire EDYTEM, UMR CNRS 5204, Université Savoie Mont Blanc, 73376, Le Bourget-du-Lac cedex, France
| | - Giovanni Zanchetta
- Dipartimento di Scienze delle Terra and CIRSEC, University of Pisa, 56126, Pisa, Italy
| | - Ilaria Isola
- Istituto Nazionale di Geofisica e Vulcanologia, 56126, Pisa, Italy
| | - Eleonora Regattieri
- Istituto di Geoscienze e Georisorse, IGG-CNR, Via Moruzzi 1, 56126, Pisa, Italy
| | - John Hellstrom
- School of Earth Sciences, The University of Melbourne, Parkville, 3010, VIC, Australia
| | - Aline Govin
- LSCE-IPSL (CEA-CNRS-UVSQ), Paris-Saclay University, 91190, Gif-sur Yvette, France
| | - Polychronis C Tzedakis
- Environmental Change Research Centre, Department of Geography, University College London, London, WC1E 6BT, UK
| | - Trevor Ireland
- Research School of Earth Sciences, The Australian National University, Canberra, 2600, ACT, Australia
| | - Ellen Corrick
- School of Geography, The University of Melbourne, Parkville, 3010, VIC, Australia
| | - Alan Greig
- School of Earth Sciences, The University of Melbourne, Parkville, 3010, VIC, Australia
| | - Henri Wong
- Australian Nuclear Science and Technology Organisation, Lucas Heights, NSW, 2234, Australia
| | - Leonardo Piccini
- Dipartimento di Scienze delle Terra, Universita degli Studi di Firenze, Via la Pira 4, 50121, Firenze, Italy
| | - Peter Holden
- Research School of Earth Sciences, The Australian National University, Canberra, 2600, ACT, Australia
| | - Jon Woodhead
- School of Earth Sciences, The University of Melbourne, Parkville, 3010, VIC, Australia
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