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Barazetti AR, Dealis ML, Basso KR, Silva MCD, Alves LDC, Parra MEA, Simionato AS, Cely MVT, Macedo AL, Silva DB, Andrade G. Evaluation of Resistance Induction Promoted by Bioactive Compounds of Pseudomonas aeruginosa LV Strain against Asian Soybean Rust. Microorganisms 2024; 12:1576. [PMID: 39203418 PMCID: PMC11355946 DOI: 10.3390/microorganisms12081576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 06/20/2024] [Accepted: 07/11/2024] [Indexed: 09/03/2024] Open
Abstract
Pseudomonas are known as higher producers of secondary metabolites with antimicrobial properties and plant growth promoters, including resistance induction. These mechanisms should be an alternative to pesticide use in crop production. Phakopsora pachyrhizi causes Asian soybean rust, representing a high loss of yield around the world. The objective of this paper was to evaluate the application of secondary metabolites produced by Pseudomonas aeruginosa LV strain from the semi-purified fraction F4A in soybean plants to induce plant resistance against P. pachyrhizi in field conditions. The experimental design was performed in randomized blocks with three replicates using two F4A doses (1 and 10 μg mL-1) combined or not with fungicides (Unizeb Gold® or Sphere Max®). The control treatment, with Uni + Sph, saponins, flavonoids, and sphingolipids, showed higher intensities in the plants. In contrast, plants treated with the F4A fraction mainly exhibited fatty acid derivatives and some non-identified compounds with nitrogen. Plants treated with Sphere Max®, with or without F4A10, showed higher intensities of glycosylated flavonoids, such as kaempferol, luteolin, narigenin, and apigenin. Plants treated with F4A showed higher intensities of genistein and fatty acid derivatives. These increases in flavonoid compound biosynthesis and antioxidant properties probably contribute to the protection against reactive oxygen species (ROS).
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Affiliation(s)
- André Riedi Barazetti
- Microbial Ecology Laboratory, Department of Microbiology, Universidade Estadual de Londrina, Londrina 86057-970, PR, Brazil; (A.R.B.); (M.L.D.); (K.R.B.); (M.C.D.S.); (L.d.C.A.); (M.E.A.P.); (A.S.S.)
| | - Mickely Liuti Dealis
- Microbial Ecology Laboratory, Department of Microbiology, Universidade Estadual de Londrina, Londrina 86057-970, PR, Brazil; (A.R.B.); (M.L.D.); (K.R.B.); (M.C.D.S.); (L.d.C.A.); (M.E.A.P.); (A.S.S.)
| | - Kawany Roque Basso
- Microbial Ecology Laboratory, Department of Microbiology, Universidade Estadual de Londrina, Londrina 86057-970, PR, Brazil; (A.R.B.); (M.L.D.); (K.R.B.); (M.C.D.S.); (L.d.C.A.); (M.E.A.P.); (A.S.S.)
| | - Maria Clara Davis Silva
- Microbial Ecology Laboratory, Department of Microbiology, Universidade Estadual de Londrina, Londrina 86057-970, PR, Brazil; (A.R.B.); (M.L.D.); (K.R.B.); (M.C.D.S.); (L.d.C.A.); (M.E.A.P.); (A.S.S.)
| | - Leonardo da Cruz Alves
- Microbial Ecology Laboratory, Department of Microbiology, Universidade Estadual de Londrina, Londrina 86057-970, PR, Brazil; (A.R.B.); (M.L.D.); (K.R.B.); (M.C.D.S.); (L.d.C.A.); (M.E.A.P.); (A.S.S.)
| | - Maria Eugênia Alcântara Parra
- Microbial Ecology Laboratory, Department of Microbiology, Universidade Estadual de Londrina, Londrina 86057-970, PR, Brazil; (A.R.B.); (M.L.D.); (K.R.B.); (M.C.D.S.); (L.d.C.A.); (M.E.A.P.); (A.S.S.)
| | - Ane Stéfano Simionato
- Microbial Ecology Laboratory, Department of Microbiology, Universidade Estadual de Londrina, Londrina 86057-970, PR, Brazil; (A.R.B.); (M.L.D.); (K.R.B.); (M.C.D.S.); (L.d.C.A.); (M.E.A.P.); (A.S.S.)
| | - Martha Viviana Torres Cely
- Agricultural and Environmental Sciences Institute, Federal University of Mato Grosso, Sinop 78550-728, MT, Brazil;
| | - Arthur Ladeira Macedo
- Natural Products and Mass Spectrometry Laboratory (LaPNEM), Federal University of Mato Grosso do Sul, Campo Grande 79070-900, MS, Brazil; (A.L.M.); (D.B.S.)
| | - Denise Brentan Silva
- Natural Products and Mass Spectrometry Laboratory (LaPNEM), Federal University of Mato Grosso do Sul, Campo Grande 79070-900, MS, Brazil; (A.L.M.); (D.B.S.)
| | - Galdino Andrade
- Microbial Ecology Laboratory, Department of Microbiology, Universidade Estadual de Londrina, Londrina 86057-970, PR, Brazil; (A.R.B.); (M.L.D.); (K.R.B.); (M.C.D.S.); (L.d.C.A.); (M.E.A.P.); (A.S.S.)
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Chin WC, Zhou YZ, Wang HY, Feng YT, Yang RY, Huang ZF, Yang YL. Bacterial polyynes uncovered: a journey through their bioactive properties, biosynthetic mechanisms, and sustainable production strategies. Nat Prod Rep 2024; 41:977-989. [PMID: 38284321 DOI: 10.1039/d3np00059a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2024]
Abstract
Covering: up to 2023Conjugated polyynes are natural compounds characterized by alternating single and triple carbon-carbon bonds, endowing them with distinct physicochemical traits and a range of biological activities. While traditionally sourced mainly from plants, recent investigations have revealed many compounds originating from bacterial strains. This review synthesizes current research on bacterial-derived conjugated polyynes, delving into their biosynthetic routes, underscoring the variety in their molecular structures, and examining their potential applications in biotechnology. Additionally, we outline future directions for metabolic and protein engineering to establish more robust and stable platforms for their production.
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Affiliation(s)
- Wei-Chih Chin
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan.
- Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan, Taiwan
| | - Yang-Zhi Zhou
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan.
- Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan, Taiwan
| | - Hao-Yung Wang
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan.
- Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan, Taiwan
- Department of Wood Based Materials and Design, National Chiayi University, Chiayi, Taiwan
| | - Yu-Ting Feng
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan.
- Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan, Taiwan
| | - Ru-Yin Yang
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan.
- Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan, Taiwan
| | - Zih-Fang Huang
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan.
- Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan, Taiwan
| | - Yu-Liang Yang
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan.
- Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan, Taiwan
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McRose D, Li J, Newman D. The chemical ecology of coumarins and phenazines affects iron acquisition by pseudomonads. Proc Natl Acad Sci U S A 2023; 120:e2217951120. [PMID: 36996105 PMCID: PMC10083548 DOI: 10.1073/pnas.2217951120] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Accepted: 02/27/2023] [Indexed: 03/31/2023] Open
Abstract
Secondary metabolites are important facilitators of plant-microbe interactions in the rhizosphere, contributing to communication, competition, and nutrient acquisition. However, at first glance, the rhizosphere seems full of metabolites with overlapping functions, and we have a limited understanding of basic principles governing metabolite use. Increasing access to the essential nutrient iron is one important, but seemingly redundant role performed by both plant and microbial Redox-Active Metabolites (RAMs). We used coumarins, RAMs made by the model plant Arabidopsis thaliana, and phenazines, RAMs made by soil-dwelling pseudomonads, to ask whether plant and microbial RAMs might each have distinct functions under different environmental conditions. We show that variations in oxygen and pH lead to predictable differences in the capacity of coumarins vs phenazines to increase the growth of iron-limited pseudomonads and that these effects depend on whether pseudomonads are grown on glucose, succinate, or pyruvate: carbon sources commonly found in root exudates. Our results are explained by the chemical reactivities of these metabolites and the redox state of phenazines as altered by microbial metabolism. This work shows that variations in the chemical microenvironment can profoundly affect secondary metabolite function and suggests plants may tune the utility of microbial secondary metabolites by altering the carbon released in root exudates. Together, these findings suggest that RAM diversity may be less overwhelming when viewed through a chemical ecological lens: Distinct molecules can be expected to be more or less important to certain ecosystem functions, such as iron acquisition, depending on the local chemical microenvironments in which they reside.
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Affiliation(s)
- Darcy L. McRose
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA91125
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA91125
| | - Jinyang Li
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA91125
| | - Dianne K. Newman
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA91125
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA91125
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Dundas CM, Dinneny JR. Genetic Circuit Design in Rhizobacteria. BIODESIGN RESEARCH 2022; 2022:9858049. [PMID: 37850138 PMCID: PMC10521742 DOI: 10.34133/2022/9858049] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Accepted: 07/31/2022] [Indexed: 10/19/2023] Open
Abstract
Genetically engineered plants hold enormous promise for tackling global food security and agricultural sustainability challenges. However, construction of plant-based genetic circuitry is constrained by a lack of well-characterized genetic parts and circuit design rules. In contrast, advances in bacterial synthetic biology have yielded a wealth of sensors, actuators, and other tools that can be used to build bacterial circuitry. As root-colonizing bacteria (rhizobacteria) exert substantial influence over plant health and growth, genetic circuit design in these microorganisms can be used to indirectly engineer plants and accelerate the design-build-test-learn cycle. Here, we outline genetic parts and best practices for designing rhizobacterial circuits, with an emphasis on sensors, actuators, and chassis species that can be used to monitor/control rhizosphere and plant processes.
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Affiliation(s)
| | - José R. Dinneny
- Department of Biology, Stanford University, Stanford, CA 94305, USA
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