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You W, Peng W, Tian Z, Zheng M. Uranium bioremediation with U(VI)-reducing bacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 798:149107. [PMID: 34325147 DOI: 10.1016/j.scitotenv.2021.149107] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 07/13/2021] [Accepted: 07/13/2021] [Indexed: 06/13/2023]
Abstract
Uranium (U) pollution is an environmental hazard caused by the development of the nuclear industry. Microbial reduction of hexavalent uranium (U(VI)) to tetravalent uranium (U(IV)) reduces U solubility and mobility and has been proposed as an effective method to remediate uranium contamination. In this review, U(VI) remediation with respect to U(VI)-reducing bacteria, mechanisms, influencing factors, products, and reoxidation are systematically summarized. Reportedly, some metal- and sulfate-reducing bacteria possess excellent U(VI) reduction capability through mechanisms involving c-type cytochromes, extracellular pili, electron shuttle, or thioredoxin reduction. In situ remediation has been demonstrated as an ideal strategy for large-scale degradation of uranium contaminants than ex situ. However, U(VI) reduction efficiency can be affected by various factors, including pH, temperature, bicarbonate, electron donors, and coexisting metal ions. Furthermore, it is noteworthy that the reduction products could be reoxidized when exposed to oxygen and nitrate, inevitably compromising the remediation effects, especially for non-crystalline U(IV) with weak stability.
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Affiliation(s)
- Wenbo You
- Key Laboratory of Regional Energy Systems Optimization, Ministry of Education, College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China
| | - Wanting Peng
- Key Laboratory of Regional Energy Systems Optimization, Ministry of Education, College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China
| | - Zhichao Tian
- Key Laboratory of Regional Energy Systems Optimization, Ministry of Education, College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China
| | - Maosheng Zheng
- Key Laboratory of Regional Energy Systems Optimization, Ministry of Education, College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China.
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Microbial Diversity in Deep-Subsurface Hot Brines of Northwest Poland: from Community Structure to Isolate Characteristics. Appl Environ Microbiol 2020; 86:AEM.00252-20. [PMID: 32198175 PMCID: PMC7205482 DOI: 10.1128/aem.00252-20] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 03/10/2020] [Indexed: 01/06/2023] Open
Abstract
Deep-subsurface hot brines in northwest Poland, extracted through boreholes reaching 1.6 and 2.6 km below the ground surface, were microbiologically investigated using culture-independent and culture-dependent methods. The high-throughput sequencing of 16S rRNA gene amplicons showed a very low diversity of bacterial communities, which were dominated by phyla Proteobacteria and Firmicutes Bacterial genera potentially involved in sulfur oxidation and nitrate reduction (Halothiobacillus and Methylobacterium) prevailed in both waters over the sulfate reducers ("Candidatus Desulforudis" and Desulfotomaculum). Only one archaeal taxon, affiliated with the order Thermoplasmatales, was detected in analyzed samples. Bacterial isolates obtained from these deep hot brines were closely related to Bacillus paralicheniformis based on the 16S rRNA sequence similarity. However, genomic and physiological analyses made for one of the isolates, Bacillus paralicheniformis strain TS6, revealed the existence of more diverse metabolic pathways than those of its moderate-temperature counterpart. These specific traits may be associated with the ecological adaptations to the extreme habitat, which suggest that some lineages of B. paralicheniformis are halothermophilic.IMPORTANCE Deep-subsurface aquifers, buried thousands of meters down the Earth's crust, belong to the most underexplored microbial habitats. Although a few studies revealed the existence of microbial life at the depths, the knowledge about the microbial life in the deep hydrosphere is still scarce due to the limited access to such environments. Studying the subsurface microbiome provides unique information on microbial diversity, community structure, and geomicrobiological processes occurring under extreme conditions of the deep subsurface. Our study shows that low-diversity microbial assemblages in subsurface hot brines were dominated by the bacteria involved in biogeochemical cycles of sulfur and nitrogen. Based on genomic and physiological analyses, we found that the Bacillus paralicheniformis isolate obtained from the brine under study differed from the mesophilic species in the presence of specific adaptations to harsh environmental conditions. We indicate that some lineages of B. paralicheniformis are halothermophilic, which was not previously reported.
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Nagy K, Ábrahám Á, Keymer JE, Galajda P. Application of Microfluidics in Experimental Ecology: The Importance of Being Spatial. Front Microbiol 2018; 9:496. [PMID: 29616009 PMCID: PMC5870036 DOI: 10.3389/fmicb.2018.00496] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Accepted: 03/02/2018] [Indexed: 12/21/2022] Open
Abstract
Microfluidics is an emerging technology that is used more and more in biology experiments. Its capabilities of creating precisely controlled conditions in cellular dimensions make it ideal to explore cell-cell and cell-environment interactions. Thus, a wide spectrum of problems in microbial ecology can be studied using engineered microbial habitats. Moreover, artificial microfluidic ecosystems can serve as model systems to test ecology theories and principles that apply on a higher level in the hierarchy of biological organization. In this mini review we aim to demonstrate the versatility of microfluidics and the diversity of its applications that help the advance of microbiology, and in more general, experimental ecology.
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Affiliation(s)
- Krisztina Nagy
- Biological Research Centre, Institute of Biophysics, Hungarian Academy of Sciences, Szeged, Hungary
| | - Ágnes Ábrahám
- Biological Research Centre, Institute of Biophysics, Hungarian Academy of Sciences, Szeged, Hungary
- Doctoral School of Multidisciplinary Medical Science, University of Szeged, Szeged, Hungary
| | - Juan E. Keymer
- School of Biological Sciences and School of Physics, Pontifical Catholic University of Chile, Santiago, Chile
| | - Péter Galajda
- Biological Research Centre, Institute of Biophysics, Hungarian Academy of Sciences, Szeged, Hungary
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Tassi F, Fazi S, Rossetti S, Pratesi P, Ceccotti M, Cabassi J, Capecchiacci F, Venturi S, Vaselli O. The biogeochemical vertical structure renders a meromictic volcanic lake a trap for geogenic CO2 (Lake Averno, Italy). PLoS One 2018; 13:e0193914. [PMID: 29509779 PMCID: PMC5839588 DOI: 10.1371/journal.pone.0193914] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2017] [Accepted: 02/07/2018] [Indexed: 11/18/2022] Open
Abstract
Volcanic lakes are characterized by physicochemical favorable conditions for the development of reservoirs of C-bearing greenhouse gases that can be dispersed to air during occasional rollover events. By combining a microbiological and geochemical approach, we showed that the chemistry of the CO2- and CH4-rich gas reservoir hosted within the meromictic Lake Averno (Campi Flegrei, southern Italy) are related to the microbial niche differentiation along the vertical water column. The simultaneous occurrence of diverse functional groups of microbes operating under different conditions suggests that these habitats harbor complex microbial consortia that impact on the production and consumption of greenhouse gases. In the epilimnion, the activity of aerobic methanotrophic bacteria and photosynthetic biota, together with CO2 dissolution at relatively high pH, enhanced CO2- and CH4 consumption, which also occurred in the hypolimnion. Moreover, results from computations carried out to evaluate the dependence of the lake stability on the CO2/CH4 ratios, suggested that the water density vertical gradient was mainly controlled by salinity and temperature, whereas the effect of dissolved gases was minor, excepting if extremely high increases of CH4 are admitted. Therefore, biological processes, controlling the composition of CO2 and CH4, contributed to stabilize the lake stratification of the lake. Overall, Lake Averno, and supposedly the numerous worldwide distributed volcanic lakes having similar features (namely bio-activity lakes), acts as a sink for the CO2 supplied from the hydrothermal/magmatic system, displaying a significant influence on the local carbon budget.
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Affiliation(s)
- Franco Tassi
- Department of Earth Sciences, University of Florence, Via G. La Pira 4, Florence, Italy
- IGG-CNR Institute of Geosciences and Earth Resources, National Research Council of Italy, Via La Pira 4, Florence, Italy
- * E-mail:
| | - Stefano Fazi
- IRSA-CNR Water Research Institute, National Research Council of Italy, Via Salaria, Monterotondo, Rome, Italy
| | - Simona Rossetti
- IRSA-CNR Water Research Institute, National Research Council of Italy, Via Salaria, Monterotondo, Rome, Italy
| | - Paolo Pratesi
- Department of Earth Sciences, University of Florence, Via G. La Pira 4, Florence, Italy
| | - Marco Ceccotti
- IRSA-CNR Water Research Institute, National Research Council of Italy, Via Salaria, Monterotondo, Rome, Italy
| | - Jacopo Cabassi
- Department of Earth Sciences, University of Florence, Via G. La Pira 4, Florence, Italy
- IGG-CNR Institute of Geosciences and Earth Resources, National Research Council of Italy, Via La Pira 4, Florence, Italy
| | | | - Stefania Venturi
- Department of Earth Sciences, University of Florence, Via G. La Pira 4, Florence, Italy
- IGG-CNR Institute of Geosciences and Earth Resources, National Research Council of Italy, Via La Pira 4, Florence, Italy
| | - Orlando Vaselli
- Department of Earth Sciences, University of Florence, Via G. La Pira 4, Florence, Italy
- IGG-CNR Institute of Geosciences and Earth Resources, National Research Council of Italy, Via La Pira 4, Florence, Italy
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Li D, Hu N, Sui Y, Ding D, Li K, Li G, Wang Y. Influence of bicarbonate on the abundance of microbial communities capable of reducing U(vi) in groundwater. RSC Adv 2017. [DOI: 10.1039/c7ra09795f] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
7 experiments amended with 0, 5, 10, 15, 20, 25 and 30 mM initial concentrations of bicarbonate were conducted to investigate the influence of different concentrations of bicarbonate on the abundance of microbial communities capable of reducing U(vi) in groundwater.
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Affiliation(s)
- Dianxin Li
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Nan Hu
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Yang Sui
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Dexin Ding
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Ke Li
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Guangyue Li
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
| | - Yongdong Wang
- Key Discipline Laboratory for National Defence for Biotechnology in Uranium Mining and Hydrometallurgy
- University of South China
- 421001 Hengyang
- China
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Bao C, Wu H, Li L, Newcomer D, Long PE, Williams KH. Uranium bioreduction rates across scales: biogeochemical hot moments and hot spots during a biostimulation experiment at Rifle, Colorado. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:10116-10127. [PMID: 25079237 DOI: 10.1021/es501060d] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We aim to understand the scale-dependent evolution of uranium bioreduction during a field experiment at a former uranium mill site near Rifle, Colorado. Acetate was injected to stimulate Fe-reducing bacteria (FeRB) and to immobilize aqueous U(VI) to insoluble U(IV). Bicarbonate was coinjected in half of the domain to mobilize sorbed U(VI). We used reactive transport modeling to integrate hydraulic and geochemical data and to quantify rates at the grid block (0.25 m) and experimental field scale (tens of meters). Although local rates varied by orders of magnitude in conjunction with biostimulation fronts propagating downstream, field-scale rates were dominated by those orders of magnitude higher rates at a few selected hot spots where Fe(III), U(VI), and FeRB were at their maxima in the vicinity of the injection wells. At particular locations, the hot moments with maximum rates negatively corresponded to their distance from the injection wells. Although bicarbonate injection enhanced local rates near the injection wells by a maximum of 39.4%, its effect at the field scale was limited to a maximum of 10.0%. We propose a rate-versus-measurement-length relationship (log R' = -0.63 log L - 2.20, with R' in μmol/mg cell protein/day and L in meters) for orders-of-magnitude estimation of uranium bioreduction rates across scales.
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Affiliation(s)
- Chen Bao
- John and Willie Leone Department of Energy and Mineral Engineering, ‡EMS Energy Institute, and §Earth and Environmental Systems Institute (EESI), Pennsylvania State University , University Park, Pennsylvania 16802, United States
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