1
|
Nelson C, Dadi P, Shah DD, Garcia-Pichel F. Spatial organization of a soil cyanobacterium and its cyanosphere through GABA/Glu signaling to optimize mutualistic nitrogen fixation. THE ISME JOURNAL 2024; 18:wrad029. [PMID: 38366166 PMCID: PMC10881301 DOI: 10.1093/ismejo/wrad029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 12/02/2023] [Accepted: 12/08/2023] [Indexed: 02/18/2024]
Abstract
Soil biocrusts are characterized by the spatial self-organization of resident microbial populations at small scales. The cyanobacterium Microcoleus vaginatus, a prominent primary producer and pioneer biocrust former, relies on a mutualistic carbon (C) for nitrogen (N) exchange with its heterotrophic cyanosphere microbiome, a mutualism that may be optimized through the ability of the cyanobacterium to aggregate into bundles of trichomes. Testing both environmental populations and representative isolates, we show that the proximity of mutualistic diazotroph populations results in M. vaginatus bundle formation orchestrated through chemophobic and chemokinetic responses to gamma-aminobutyric acid (GABA) /glutamate (Glu) signals. The signaling system is characterized by: a high GABA sensitivity (nM range) and low Glu sensitivity (μM to mM), the fact that GABA and Glu are produced by the cyanobacterium as an autoinduction response to N deficiency, and by the presence of interspecific signaling by heterotrophs in response to C limitation. Further, it crucially switches from a positive to a negative feedback loop with increasing GABA concentration, thus setting maximal bundle sizes. The unprecedented use of GABA/Glu as an intra- and interspecific signal in the spatial organization of microbiomes highlights the pair as truly universal infochemicals.
Collapse
Affiliation(s)
- Corey Nelson
- Center for Fundamental and Applied Microbiomics, Biodesign Institute, Arizona State University, Tempe, AZ 85287, United States
- School of Life Sciences, Arizona State University, Tempe, AZ 85287, United States
- Instituto Multidisciplinar Para Estudios del Medio “Ramon Margalef”, Universidad de Alicante, San Vicente del Raspeig 03690, Spain
| | - Pavani Dadi
- Center for Fundamental and Applied Microbiomics, Biodesign Institute, Arizona State University, Tempe, AZ 85287, United States
- School of Life Sciences, Arizona State University, Tempe, AZ 85287, United States
| | - Dhara D Shah
- Center for Fundamental and Applied Microbiomics, Biodesign Institute, Arizona State University, Tempe, AZ 85287, United States
- School of Mathematical and Natural Sciences, Arizona State University, Glendale, AZ 85306, United States
| | - Ferran Garcia-Pichel
- Center for Fundamental and Applied Microbiomics, Biodesign Institute, Arizona State University, Tempe, AZ 85287, United States
- School of Life Sciences, Arizona State University, Tempe, AZ 85287, United States
| |
Collapse
|
2
|
Joosten ED, Hamelin J, Milferstedt K. Initial type and abundance of cyanobacteria determine morphotype development of phototrophic ecosystems. FEMS Microbiol Ecol 2023; 99:fiad099. [PMID: 37653452 DOI: 10.1093/femsec/fiad099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 07/24/2023] [Accepted: 08/28/2023] [Indexed: 09/02/2023] Open
Abstract
Phototrophic aggregates containing filamentous cyanobacteria occur naturally, for example, as cryoconite on glaciers and microbialites in fresh or marine waters, but their formation is not fully understood. Laboratory models are now available to reproduce aggregation, that is, the formation of different morphotypes like hemispheroids, microbial mats or sphere-like aggregates we call photogranules. In the model, activated sludge as starting matrix is transformed into aggregates enclosed by a phototrophic layer of growing cyanobacteria. These cyanobacteria were either enriched from the matrix or we added them intentionally. We hypothesize that the resulting morphotype depends on the type and concentration of the added cyanobacteria. When cyanobacteria from mature photogranules were added to activated sludge, photogranulation was not observed, but microbial mats were formed. Photogranulation of sludge could be promoted when adding sufficient quantities of cyanobacterial strains that form clumps when grown as isolates. The cyanobacteria putatively responsible for photogranulation were undetectable or only present in low abundance in the final communities of photogranules, which were always dominated by mat-forming cyanobacteria. We suggest that, in a temporal succession, the ecosystem engineer initiating photogranulation eventually disappears, leaving behind its structural legacy. We conclude that understanding phototrophic aggregate formation requires considering the initial succession stages of the ecosystem development.
Collapse
Affiliation(s)
| | - Jérôme Hamelin
- INRAE, Univ Montpellier, LBE, 102 Avenue des Etangs, 11100, Narbonne, France
| | - Kim Milferstedt
- INRAE, Univ Montpellier, LBE, 102 Avenue des Etangs, 11100, Narbonne, France
| |
Collapse
|
3
|
McGorum BC, Pirie RS, Glendinning L, McLachlan G, Metcalf JS, Banack SA, Cox PA, Codd GA. Grazing livestock are exposed to terrestrial cyanobacteria. Vet Res 2015; 46:16. [PMID: 25828258 PMCID: PMC4342207 DOI: 10.1186/s13567-015-0143-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2014] [Accepted: 01/06/2015] [Indexed: 01/09/2023] Open
Abstract
While toxins from aquatic cyanobacteria are a well-recognised cause of disease in birds and animals, exposure of grazing livestock to terrestrial cyanobacteria has not been described. This study identified terrestrial cyanobacteria, predominantly Phormidium spp., in the biofilm of plants from most livestock fields investigated. Lower numbers of other cyanobacteria, microalgae and fungi were present on many plants. Cyanobacterial 16S rDNA, predominantly from Phormidium spp., was detected in all samples tested, including 6 plant washings, 1 soil sample and ileal contents from 2 grazing horses. Further work was performed to test the hypothesis that ingestion of cyanotoxins contributes to the pathogenesis of some currently unexplained diseases of grazing horses, including equine grass sickness (EGS), equine motor neuron disease (EMND) and hepatopathy. Phormidium population density was significantly higher on EGS fields than on control fields. The cyanobacterial neurotoxic amino acid 2,4-diaminobutyric acid (DAB) was detected in plant washings from EGS fields, but worst case scenario estimations suggested the dose would be insufficient to cause disease. Neither DAB nor the cyanobacterial neurotoxins β-N-methylamino-L-alanine and N-(2-aminoethyl) glycine were detected in neural tissue from 6 EGS horses, 2 EMND horses and 7 control horses. Phormidium was present in low numbers on plants where horses had unexplained hepatopathy. This study did not yield evidence linking known cyanotoxins with disease in grazing horses. However, further study is warranted to identify and quantify toxins produced by cyanobacteria on livestock fields, and determine whether, under appropriate conditions, known or unknown cyanotoxins contribute to currently unexplained diseases in grazing livestock.
Collapse
|
4
|
Castenholz RW. Portrait of a Geothermal Spring, Hunter's Hot Springs, Oregon. Life (Basel) 2015; 5:332-47. [PMID: 25633225 PMCID: PMC4390855 DOI: 10.3390/life5010332] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2014] [Revised: 01/07/2015] [Accepted: 01/21/2015] [Indexed: 11/16/2022] Open
Abstract
Although alkaline Hunter's Hot Springs in southeastern Oregon has been studied extensively for over 40 years, most of these studies and the subsequent publications were before the advent of molecular methods. However, there are many field observations and laboratory experiments that reveal the major aspects of the phototrophic species composition within various physical and chemical gradients of these springs. Relatively constant temperature boundaries demark the upper boundary of the unicellular cyanobacterium, Synechococcus at 73-74 °C (the world-wide upper limit for photosynthesis), and 68-70 °C the upper limit for Chloroflexus. The upper limit for the cover of the filamentous cyanobacterium, Geitlerinema (Oscillatoria) is at 54-55 °C, and the in situ lower limit at 47-48 °C for all three of these phototrophs due to the upper temperature limit for the grazing ostracod, Thermopsis. The in situ upper limit for the cyanobacteria Pleurocapsa and Calothrix is at ~47-48 °C, which are more grazer-resistant and grazer dependent. All of these demarcations are easily visible in the field. In addition, there is a biosulfide production in some sections of the springs that have a large impact on the microbiology. Most of the temperature and chemical limits have been explained by field and laboratory experiments.
Collapse
Affiliation(s)
- Richard W Castenholz
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA.
| |
Collapse
|
5
|
Oxygen-Dependent Morphogenesis of Modern Clumped Photosynthetic Mats and Implications for the Archean Stromatolite Record. GEOSCIENCES 2012. [DOI: 10.3390/geosciences2040235] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
6
|
Garcia-Pichel F, Mechling M, Castenholz RW. Diel Migrations of Microorganisms within a Benthic, Hypersaline Mat Community. Appl Environ Microbiol 2010; 60:1500-11. [PMID: 16349251 PMCID: PMC201509 DOI: 10.1128/aem.60.5.1500-1511.1994] [Citation(s) in RCA: 112] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We studied the diel migrations of several species of microorganisms in a hypersaline, layered microbial mat. The migrations were quantified by repeated coring of the mat with glass capillary tubes. The resulting minicores were microscopically analyzed by using bright-field and epifluorescence (visible and infrared) microscopy to determine depths of coherent layers and were later dissected to determine direct microscopic counts of microorganisms. Microelectrode measurements of oxygen concentration, fiber optic microprobe measurements of light penetration within the mat, and incident irradiance measurements accompanied the minicore sampling. In addition, pigment content, photosynthesis and irradiance responses, the capacity for anoxygenic photosynthesis, and gliding speeds were determined for the migrating cyanobacteria. Heavily pigmented Oscillatoria sp. and Spirulina cf. subsalsa migrated downward into the mat during the early morning and remained deep until dusk, when upward migration occurred. The mean depth of the migration (not more than 0.4 to 0.5 mm) was directly correlated with the incident irradiance over the mat surface. We estimated that light intensity at the upper boundary of the migrating cyanobacteria was attenuated to such an extent that photoinhibition was effectively avoided but that intensities which saturated photosynthesis were maintained through most of the daylight hours. Light was a cue of paramount importance in triggering and modulating the migration of the cyanobacteria, even though the migrating phenomenon could not be explained solely in terms of a light response. We failed to detect diel migration patterns for other cyanobacterial species and filamentous anoxyphotobacteria. The sulfide-oxidizing bacterium Beggiatoa sp. migrated as a band that followed low oxygen concentrations within the mat during daylight hours. During the nighttime, part of this population migrated toward the mat surface, but a significant proportion remained deep.
Collapse
Affiliation(s)
- F Garcia-Pichel
- Department of Biology, University of Oregon, Eugene, Oregon 97403
| | | | | |
Collapse
|
7
|
Shepard RN, Sumner DY. Undirected motility of filamentous cyanobacteria produces reticulate mats. GEOBIOLOGY 2010; 8:179-90. [PMID: 20345889 DOI: 10.1111/j.1472-4669.2010.00235.x] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The roles of biology in the morphogenesis of microbial mats and stromatolites remain enigmatic due to the vast array of physical and chemical influences on morphology. However, certain microbial behaviors produce complex morphological features that can be directly attributed to motility patterns. Specifically, laboratory experiments with a strain of the cyanobacteria Pseudanabaena demonstrate that distinctive morphologies arise from the undirected gliding and colliding of filaments. When filamentous cells collide, they align and clump, producing intersecting ridges surrounding areas with low cell density, i.e. reticulate structures. Cell motility is essential for the development of reticulates and associated structures: filaments organize into reticulates faster than cell division and growth, and conditions that inhibit motility also inhibit reticulate formation. Cell density of the inoculum affects the frequency of cell-cell collisions, and thus the time required for biofilm organization into reticulate structures. This also affects the specific geometry of the reticulates. These patterns are propagated into larger structures as cyanobacterial cell numbers increase and cells remain motile. Thus, cell motility is important for templating and maintaining the morphology of these microbial communities, demonstrating a direct link between a microbial behavior and a community morphology. Reticulate geometries have been identified in natural microbial mats as well as in the fossil record, and these structures can be attributed to the motility of filamentous bacteria.
Collapse
Affiliation(s)
- R N Shepard
- Department of Geology, University of California, Davis, CA, USA
| | | |
Collapse
|
8
|
Richardson LL. Horizontal and Vertical Migration Patterns of Phormidium corallyticum and Beggiatoa spp. Associated with Black-Band Disease of Corals. MICROBIAL ECOLOGY 1996; 32:323-35. [PMID: 8849426 DOI: 10.1007/bf00183066] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
An in situ field study of the motility patterns exhibited by Phormidium corallyticum and Beggiatoa spp. in black-band disease of corals was conducted over a 5-day period. Measurements were made at a spatial resolution of 50 &mgr;m to document the horizontal migration of black-band across living coral tissue, while vertical migrations within the band were documented by observation and macrophotography of the black-band surface. It was determined that horizontal migration occurred both day and night, with the fastest movements by the front of the band during the day and the back of the band at night. Beggiatoa would rise to the band surface at night, and would often remain above the cyanobacterial population during extended periods of illumination the following day. The migration patterns are discussed in terms of motility cues and microbial physiology.
Collapse
Affiliation(s)
- LL Richardson
- Department of Biological Sciences and Drinking Water Research Center, Florida International University, Miami, Florida 33199, USA
| |
Collapse
|
9
|
Stal LJ. Physiological ecology of cyanobacteria in microbial mats and other communities. THE NEW PHYTOLOGIST 1995; 131:1-32. [PMID: 33863161 DOI: 10.1111/j.1469-8137.1995.tb03051.x] [Citation(s) in RCA: 141] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
In this review some aspects of the physiological ecology of cyanobacteria are discussed by taking a microbial mat as an example. The majority of microbial mats are built and dominated by cyarsobacteria which are primary producers at the basis of the microbial foodweb in microbial mats. These micro-scale ecosystems are characterized by steep and fluctuating physico-chemical gradients of which those of light, oxygen and sulphide are the most conspicuous. Light is strongly attenuated in the sediment, and owing to constant sedimentation, the mat-forming cyanobacteria have to move upwards towards the light. However, at the sediment surface, light intensity, particularly in the u.v. part of the spectrum, is often deleterious. The gliding movement of the cyanobacteria, with photo- and chemotaxis, allows the organism to position itself in a thin layer at optimal conditions. The organic matter produced by cyanobacterial photosynthesis is decomposed by the ruicrobial community. Sulphate-reducing bacteria are important in the end-oxidation of the organic matter. These organisms are obligate anaerobes and produce sulphide. Gradients of sulphide and oxygen move up and down in the sediment as a response to diurnal variations of light intensity. Cyanobacteria, therefore, are sometimes exposed to large concentrations of the extremely toxic sulphide. Some species are capable of sulphide-dependent anoxygenic photosynthesis. Other cyanobacteria show increased rates of oxygenic photosynthesis in the presence of sulphide and have mechanisms to oxidize sulphide while avoiding sulphide toxicity. Iron might play an important role in this process. Under anoxic conditions in the dark, mat-forming cyanobacteria switch to fermentative metabolism. Many species are also capable of fermentative reduction of elemental sulphur to sulphide. The gradients of sulphide and oxygen are of particular importance for nitrogen fixation. Very few microbial mats are formed by heterocystous cyanobacteria, which are best adapted to diazntrophic growth. However, these organisms probably cannot tolerate greater concentrations of sulphide or anoxic conditions or both. Under such conditions non-heterocystous cyanobacteria become dominant as diazotrophs. These organisms avoid conditions of oxygen supersaturation. In the ecosystem, nitrogen fixation and photosynthesis might be separated temporally as well as spatially. In addition, non-heterocystous diazotrophic cyanobacteria have mechanisms at the subcellular level to protect the oxygen-sensitive nitrogenase from inaction. CONTENTS Summary 1 I. Introduction 2 II. Microbial mats 3 III. Cyanobacteria in light gradients 7 IV. Dark metabolism 10 V. Interactions with sulphide 13 VI. Nitrogen fixation 16 VII. References 28.
Collapse
Affiliation(s)
- Lucas J Stal
- Laboratory for Microbiology, University of Amsterdam, Nieuwe Achtergracht 127, NL-1018 WS Amsterdam, The Netherlands
| |
Collapse
|
10
|
Hernández Muñiz W, Stevens S. Development of motility in cultures of the cyanobacterium Mastigocladus laminosus. FEMS Microbiol Ecol 1994. [DOI: 10.1111/j.1574-6941.1994.tb00249.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
|
11
|
Willey JM, Waterbury JB. Chemotaxis toward Nitrogenous Compounds by Swimming Strains of Marine Synechococcus spp. Appl Environ Microbiol 1989; 55:1888-1894. [PMID: 16347985 PMCID: PMC202974 DOI: 10.1128/aem.55.8.1888-1894.1989] [Citation(s) in RCA: 45] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Many of the open-ocean isolates of the marine unicellular cyanobacterium Synechococcus spp. are capable of swimming motility, whereas coastal isolates are nonmotile. Surprisingly, the motile strains do not display phototactic or photophobic responses to light, but they do demonstrate positive chemoresponses to several nitrogenous compounds. The chemotactic responses of Synechococcus strain WH8113 were investigated using blind-well chemotaxis chambers fitted with 3.0-mum-pore-size Nuclepore filters. One well of each chamber contained cells suspended in aged Sargasso Sea water, and the other well contained the potential chemoattractant in seawater. The number of cells that crossed the filter into the attractant-seawater mixture was measured by direct cell counts and compared with values obtained in chambers lacking gradients. Twenty-two compounds were tested, including sugars, amino acids, and simple nitrogenous substrates, at concentrations ranging from 10 to 10 M. Strain WH8113 responded positively only to ammonia, nitrate, beta-alanine, glycine, and urea. Typically, there was a 1.5- to 2-fold increase in cell concentrations above control levels in chambers containing these compounds, which is comparable to results from similar experiments using enteric and photoheterotrophic bacteria. However, the threshold levels of 10 to 10 M found for Synechococcus spp. chemoresponses were lower by several orders of magnitude than those reported for other bacteria and fell within a range that could be ecologically significant in the oligotrophic oceans. The presence of chemotaxis in motile Synechococcus spp. supports the notion that regions of nutrient enrichment, such as the proposed microzones and patches, may play an important role in picoplankton nutrient dynamics.
Collapse
Affiliation(s)
- J M Willey
- Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543
| | | |
Collapse
|