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For: Inagaki F, Tsunogai U, Suzuki M, Kosaka A, Machiyama H, Takai K, Nunoura T, Nealson KH, Horikoshi K. Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, southern Ryukyu Arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes. Appl Environ Microbiol 2005;70:7445-55. [PMID: 15574947 PMCID: PMC535202 DOI: 10.1128/aem.70.12.7445-7455.2004] [Citation(s) in RCA: 106] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Zhang X, Heng J, Zhao Y, Wang S, Wang Y, Hu Z. Effect of salinity on carbon sequestration in constructed wetlands and its functional mechanisms. BIORESOURCE TECHNOLOGY 2024;391:129915. [PMID: 37890730 DOI: 10.1016/j.biortech.2023.129915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 10/20/2023] [Accepted: 10/23/2023] [Indexed: 10/29/2023]
2
Yuan ZF, Zhou YJ, Zou L, Chen Z, Gustave W, Duan D, Kappler A, Tang X, Xu J. pH dependence of arsenic speciation in paddy soils: The role of distinct methanotrophs. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023;318:120880. [PMID: 36528201 DOI: 10.1016/j.envpol.2022.120880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Revised: 11/30/2022] [Accepted: 12/13/2022] [Indexed: 06/17/2023]
3
Biogeochemical Activity of Methane-Related Microbial Communities in Bottom Sediments of Cold Seeps of the Laptev Sea. Microorganisms 2023;11:microorganisms11020250. [PMID: 36838215 PMCID: PMC9964916 DOI: 10.3390/microorganisms11020250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Revised: 01/12/2023] [Accepted: 01/16/2023] [Indexed: 01/21/2023]  Open
4
Allenby A, Cunningham MR, Hillebrand-Voiculescu A, Comte JC, Doherty R, Kumaresan D. Occurrence of methane-oxidizing bacteria and methanogenic archaea in earth’s cave systems—A metagenomic analysis. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.909865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
5
Comparative Metagenomics Highlight a Widespread Pathway Involved in Catabolism of Phosphonates in Marine and Terrestrial Serpentinizing Ecosystems. mSystems 2022;7:e0032822. [PMID: 35913189 PMCID: PMC9426474 DOI: 10.1128/msystems.00328-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
6
Multispecies populations of methanotrophic Methyloprofundus and cultivation of a likely dominant species from the Iheya North deep-sea hydrothermal field. Appl Environ Microbiol 2021;88:e0075821. [PMID: 34788070 PMCID: PMC8788690 DOI: 10.1128/aem.00758-21] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
7
Salem R, ElDyasti A, Audette GF. Biomedical Applications of Biomolecules Isolated from Methanotrophic Bacteria in Wastewater Treatment Systems. Biomolecules 2021;11:1217. [PMID: 34439884 PMCID: PMC8392503 DOI: 10.3390/biom11081217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 08/05/2021] [Accepted: 08/11/2021] [Indexed: 11/16/2022]  Open
8
Kong Y, Lei H, Zhang Z, Cheng W, Wang B, Pan F, Huang F, Huang F, Li W. Depth profiles of geochemical features, geochemical activities and biodiversity of microbial communities in marine sediments from the Shenhu area, the northern South China Sea. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021;779:146233. [PMID: 34030248 DOI: 10.1016/j.scitotenv.2021.146233] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 02/25/2021] [Accepted: 02/26/2021] [Indexed: 06/12/2023]
9
Jeddi M, Karray F, Loukil S, Mhiri N, Ben Abdallah M, Sayadi S. Anaerobic biological treatment of industrial saline wastewater: fixed bed reactor performance and analysis of the microbial community structure and abundance. ENVIRONMENTAL TECHNOLOGY 2020;41:1715-1725. [PMID: 30403923 DOI: 10.1080/09593330.2018.1545802] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2018] [Accepted: 11/02/2018] [Indexed: 06/08/2023]
10
Li Y, Tremblay J, Bainard LD, Cade‐Menun B, Hamel C. Long‐term effects of nitrogen and phosphorus fertilization on soil microbial community structure and function under continuous wheat production. Environ Microbiol 2019;22:1066-1088. [DOI: 10.1111/1462-2920.14824] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Revised: 10/01/2019] [Accepted: 10/02/2019] [Indexed: 11/28/2022]
11
Gründger F, Carrier V, Svenning MM, Panieri G, Vonnahme TR, Klasek S, Niemann H. Methane-fuelled biofilms predominantly composed of methanotrophic ANME-1 in Arctic gas hydrate-related sediments. Sci Rep 2019;9:9725. [PMID: 31278352 PMCID: PMC6611871 DOI: 10.1038/s41598-019-46209-5] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Accepted: 06/25/2019] [Indexed: 11/21/2022]  Open
12
van de Kamp J, Hook SE, Williams A, Tanner JE, Bodrossy L. Baseline characterization of aerobic hydrocarbon degrading microbial communities in deep-sea sediments of the Great Australian Bight, Australia. Environ Microbiol 2019;21:1782-1797. [PMID: 30761716 DOI: 10.1111/1462-2920.14559] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Revised: 01/28/2019] [Accepted: 02/07/2019] [Indexed: 11/30/2022]
13
An evolving view of methane metabolism in the Archaea. Nat Rev Microbiol 2019;17:219-232. [DOI: 10.1038/s41579-018-0136-7] [Citation(s) in RCA: 231] [Impact Index Per Article: 46.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Accepted: 11/26/2018] [Indexed: 11/08/2022]
14
Anaerobic Methane Oxidation in High-Arctic Alaskan Peatlands as a Significant Control on Net CH4 Fluxes. SOIL SYSTEMS 2019. [DOI: 10.3390/soilsystems3010007] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
15
Li Y, Wang Y, Lin Z, Wang J, He Q, Zhou J. A novel methanotrophic co-metabolic system with high soluble methane monooxygenase activity to biodegrade refractory organics in pulping wastewater. BIORESOURCE TECHNOLOGY 2018;256:358-365. [PMID: 29471231 DOI: 10.1016/j.biortech.2018.02.048] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2017] [Revised: 02/09/2018] [Accepted: 02/10/2018] [Indexed: 06/08/2023]
16
Case DH, Ijiri A, Morono Y, Tavormina P, Orphan VJ, Inagaki F. Aerobic and Anaerobic Methanotrophic Communities Associated with Methane Hydrates Exposed on the Seafloor: A High-Pressure Sampling and Stable Isotope-Incubation Experiment. Front Microbiol 2017;8:2569. [PMID: 29312247 PMCID: PMC5742206 DOI: 10.3389/fmicb.2017.02569] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2017] [Accepted: 12/11/2017] [Indexed: 01/26/2023]  Open
17
Laskar F, Das Purkayastha S, Sen A, Bhattacharya MK, Misra BB. Diversity of methanogenic archaea in freshwater sediments of lacustrine ecosystems. J Basic Microbiol 2017;58:101-119. [PMID: 29083035 DOI: 10.1002/jobm.201700341] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2017] [Revised: 09/25/2017] [Accepted: 09/27/2017] [Indexed: 12/15/2022]
18
Qi Q, Zhao M, Wang S, Ma X, Wang Y, Gao Y, Lin Q, Li X, Gu B, Li G, Zhou J, Yang Y. The Biogeographic Pattern of Microbial Functional Genes along an Altitudinal Gradient of the Tibetan Pasture. Front Microbiol 2017;8:976. [PMID: 28659870 PMCID: PMC5468456 DOI: 10.3389/fmicb.2017.00976] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Accepted: 05/15/2017] [Indexed: 01/30/2023]  Open
19
Bessette S, Moalic Y, Gautey S, Lesongeur F, Godfroy A, Toffin L. Relative Abundance and Diversity of Bacterial Methanotrophs at the Oxic-Anoxic Interface of the Congo Deep-Sea Fan. Front Microbiol 2017;8:715. [PMID: 28487684 PMCID: PMC5403828 DOI: 10.3389/fmicb.2017.00715] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2017] [Accepted: 04/06/2017] [Indexed: 11/13/2022]  Open
20
Vekeman B, Kerckhof FM, Cremers G, de Vos P, Vandamme P, Boon N, Op den Camp HJM, Heylen K. New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase. Environ Microbiol 2016;18:4523-4536. [PMID: 27501305 DOI: 10.1111/1462-2920.13485] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2016] [Accepted: 08/04/2016] [Indexed: 12/14/2022]
21
Primers: Functional Genes and 16S rRNA Genes for Methanogens. SPRINGER PROTOCOLS HANDBOOKS 2015. [DOI: 10.1007/8623_2015_138] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
22
Aoki M, Ehara M, Saito Y, Yoshioka H, Miyazaki M, Saito Y, Miyashita A, Kawakami S, Yamaguchi T, Ohashi A, Nunoura T, Takai K, Imachi H. A long-term cultivation of an anaerobic methane-oxidizing microbial community from deep-sea methane-seep sediment using a continuous-flow bioreactor. PLoS One 2014;9:e105356. [PMID: 25141130 PMCID: PMC4139340 DOI: 10.1371/journal.pone.0105356] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2014] [Accepted: 07/19/2014] [Indexed: 11/18/2022]  Open
23
Felden J, Ruff SE, Ertefai T, Inagaki F, Hinrichs KU, Wenzhöfer F. Anaerobic methanotrophic community of a 5346-m-deep vesicomyid clam colony in the Japan Trench. GEOBIOLOGY 2014;12:183-199. [PMID: 24593671 PMCID: PMC4237546 DOI: 10.1111/gbi.12078] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2013] [Accepted: 01/06/2014] [Indexed: 06/03/2023]
24
Kizilova AK, Sukhacheva MV, Pimenov NV, Yurkov AM, Kravchenko IK. Methane oxidation activity and diversity of aerobic methanotrophs in pH-neutral and semi-neutral thermal springs of the Kunashir Island, Russian Far East. Extremophiles 2013;18:207-18. [PMID: 24343375 DOI: 10.1007/s00792-013-0603-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2013] [Accepted: 11/14/2013] [Indexed: 11/26/2022]
25
Vigneron A, Cruaud P, Pignet P, Caprais JC, Gayet N, Cambon-Bonavita MA, Godfroy A, Toffin L. Bacterial communities and syntrophic associations involved in anaerobic oxidation of methane process of the Sonora Margin cold seeps, Guaymas Basin. Environ Microbiol 2013;16:2777-90. [PMID: 24238139 DOI: 10.1111/1462-2920.12324] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2013] [Accepted: 10/31/2013] [Indexed: 12/01/2022]
26
Microbial communities of deep-sea methane seeps at Hikurangi continental margin (New Zealand). PLoS One 2013;8:e72627. [PMID: 24098632 PMCID: PMC3787109 DOI: 10.1371/journal.pone.0072627] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Accepted: 07/11/2013] [Indexed: 01/31/2023]  Open
27
Li M, Jain S, Baker BJ, Taylor C, Dick GJ. Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume. Environ Microbiol 2013;16:60-71. [PMID: 23826624 DOI: 10.1111/1462-2920.12182] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2012] [Revised: 05/10/2013] [Accepted: 06/03/2013] [Indexed: 12/30/2022]
28
Ragon M, Van Driessche AES, García-Ruíz JM, Moreira D, López-García P. Microbial diversity in the deep-subsurface hydrothermal aquifer feeding the giant gypsum crystal-bearing Naica Mine, Mexico. Front Microbiol 2013;4:37. [PMID: 23508882 PMCID: PMC3589807 DOI: 10.3389/fmicb.2013.00037] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2012] [Accepted: 02/12/2013] [Indexed: 11/13/2022]  Open
29
Hoshino T, Inagaki F. Molecular quantification of environmental DNA using microfluidics and digital PCR. Syst Appl Microbiol 2012;35:390-5. [DOI: 10.1016/j.syapm.2012.06.006] [Citation(s) in RCA: 100] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2012] [Revised: 06/21/2012] [Accepted: 06/25/2012] [Indexed: 11/29/2022]
30
Nunoura T, Takaki Y, Kazama H, Hirai M, Ashi J, Imachi H, Takai K. Microbial diversity in deep-sea methane seep sediments presented by SSU rRNA gene tag sequencing. Microbes Environ 2012;27:382-90. [PMID: 22510646 PMCID: PMC4103545 DOI: 10.1264/jsme2.me12032] [Citation(s) in RCA: 87] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
31
Dourado MN, Andreote FD, Dini-Andreote F, Conti R, Araújo JM, Araújo WL. Analysis of 16S rRNA and mxaF genes revealing insights into Methylobacterium niche-specific plant association. Genet Mol Biol 2012;35:142-8. [PMID: 22481887 PMCID: PMC3313503 DOI: 10.1590/s1415-47572012005000017] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2011] [Accepted: 12/09/2011] [Indexed: 11/21/2022]  Open
32
Mori K, Suzuki KI, Urabe T, Sugihara M, Tanaka K, Hamada M, Hanada S. Thioprofundum hispidum sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing gammaproteobacterium isolated from the hydrothermal field on Suiyo Seamount, and proposal of Thioalkalispiraceae fam. nov. in the order Chromatiales. Int J Syst Evol Microbiol 2011;61:2412-2418. [DOI: 10.1099/ijs.0.026963-0] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]  Open
33
Narihiro T, Sekiguchi Y. Oligonucleotide primers, probes and molecular methods for the environmental monitoring of methanogenic archaea. Microb Biotechnol 2011;4:585-602. [PMID: 21375721 PMCID: PMC3819009 DOI: 10.1111/j.1751-7915.2010.00239.x] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2010] [Accepted: 11/12/2010] [Indexed: 11/28/2022]  Open
34
Lazar CS, Dinasquet J, L'Haridon S, Pignet P, Toffin L. Distribution of anaerobic methane-oxidizing and sulfate-reducing communities in the G11 Nyegga pockmark, Norwegian Sea. Antonie van Leeuwenhoek 2011;100:639-53. [PMID: 21751028 DOI: 10.1007/s10482-011-9620-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2011] [Accepted: 06/30/2011] [Indexed: 01/31/2023]
35
Crépeau V, Cambon Bonavita MA, Lesongeur F, Randrianalivelo H, Sarradin PM, Sarrazin J, Godfroy A. Diversity and function in microbial mats from the Lucky Strike hydrothermal vent field. FEMS Microbiol Ecol 2011;76:524-40. [DOI: 10.1111/j.1574-6941.2011.01070.x] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]  Open
36
Lazar CS, Parkes RJ, Cragg BA, L'Haridon S, Toffin L. Methanogenic diversity and activity in hypersaline sediments of the centre of the Napoli mud volcano, Eastern Mediterranean Sea. Environ Microbiol 2011;13:2078-91. [PMID: 21382146 DOI: 10.1111/j.1462-2920.2011.02425.x] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
37
Effect of spatial differences in microbial activity, pH, and substrate levels on methanogenesis initiation in refuse. Appl Environ Microbiol 2011;77:2381-91. [PMID: 21296940 DOI: 10.1128/aem.02349-10] [Citation(s) in RCA: 101] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
38
Merkel AY, Chernykh NA, Kanapatskii TA, Pimenov NV. Detection of methanotrophic archaea in pockmark sediments (Gdansk Deep, Baltic Sea) by sequence analysis of the gene encoding the α subunit of methyl-coenzyme M reductase. Microbiology (Reading) 2010. [DOI: 10.1134/s0026261710060196] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
39
Identification of novel methane-, ethane-, and propane-oxidizing bacteria at marine hydrocarbon seeps by stable isotope probing. Appl Environ Microbiol 2010;76:6412-22. [PMID: 20675448 DOI: 10.1128/aem.00271-10] [Citation(s) in RCA: 106] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
40
Yagi JM, Suflita JM, Gieg LM, DeRito CM, Jeon CO, Madsen EL. Subsurface cycling of nitrogen and anaerobic aromatic hydrocarbon biodegradation revealed by nucleic Acid and metabolic biomarkers. Appl Environ Microbiol 2010;76:3124-34. [PMID: 20348302 PMCID: PMC2869145 DOI: 10.1128/aem.00172-10] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2010] [Accepted: 03/17/2010] [Indexed: 11/20/2022]  Open
41
Lloyd KG, MacGregor BJ, Teske A. Quantitative PCR methods for RNA and DNA in marine sediments: maximizing yield while overcoming inhibition. FEMS Microbiol Ecol 2010;72:143-51. [DOI: 10.1111/j.1574-6941.2009.00827.x] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
42
Lloyd KG, Albert DB, Biddle JF, Chanton JP, Pizarro O, Teske A. Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep. PLoS One 2010;5:e8738. [PMID: 20090951 PMCID: PMC2806916 DOI: 10.1371/journal.pone.0008738] [Citation(s) in RCA: 106] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2009] [Accepted: 12/16/2009] [Indexed: 11/18/2022]  Open
43
TAKISHITA KIYOTAKA, KAKIZOE NATSUKI, YOSHIDA TAKAO, MARUYAMA TADASHI. Molecular Evidence that Phylogenetically Diverged Ciliates Are Active in Microbial Mats of Deep-Sea Cold-Seep Sediment. J Eukaryot Microbiol 2010;57:76-86. [DOI: 10.1111/j.1550-7408.2009.00457.x] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Knittel K, Boetius A. Anaerobic oxidation of methane: progress with an unknown process. Annu Rev Microbiol 2009;63:311-34. [PMID: 19575572 DOI: 10.1146/annurev.micro.61.080706.093130] [Citation(s) in RCA: 689] [Impact Index Per Article: 45.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Abell GCJ, Stralis-Pavese N, Sessitsch A, Bodrossy L. Grazing affects methanotroph activity and diversity in an alpine meadow soil. ENVIRONMENTAL MICROBIOLOGY REPORTS 2009;1:457-465. [PMID: 23765900 DOI: 10.1111/j.1758-2229.2009.00078.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
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Qiu Q, Conrad R, Lu Y. Cross-feeding of methane carbon among bacteria on rice roots revealed by DNA-stable isotope probing. ENVIRONMENTAL MICROBIOLOGY REPORTS 2009;1:355-61. [PMID: 23765887 DOI: 10.1111/j.1758-2229.2009.00045.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
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Suzuki R, Lisdiyanti P, Komagata K, Uchimura T. MxaF gene, a gene encoding alpha subunit of methanol dehydrogenase in and false growth of acetic acid bacteria on methanol. J GEN APPL MICROBIOL 2009;55:101-10. [PMID: 19436127 DOI: 10.2323/jgam.55.101] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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mcrA-targeted real-time quantitative PCR method to examine methanogen communities. Appl Environ Microbiol 2009;75:4435-42. [PMID: 19447957 DOI: 10.1128/aem.02858-08] [Citation(s) in RCA: 144] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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Wasmund K, Kurtböke DI, Burns KA, Bourne DG. Microbial diversity in sediments associated with a shallow methane seep in the tropical Timor Sea of Australia reveals a novel aerobic methanotroph diversity. FEMS Microbiol Ecol 2009;68:142-51. [DOI: 10.1111/j.1574-6941.2009.00667.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]  Open
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Kato S, Kobayashi C, Kakegawa T, Yamagishi A. Microbial communities in iron-silica-rich microbial mats at deep-sea hydrothermal fields of the Southern Mariana Trough. Environ Microbiol 2009;11:2094-111. [PMID: 19397679 DOI: 10.1111/j.1462-2920.2009.01930.x] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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