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Komatsu T, Ohya K, Sawai K, Odoi JO, Otsu K, Ota A, Ito T, Kawai M, Maruyama F. Draft genome sequences of Mycolicibacterium peregrinum isolated from a pig with lymphadenitis and from soil on the same Japanese pig farm. BMC Res Notes 2019; 12:341. [PMID: 31208450 PMCID: PMC6580614 DOI: 10.1186/s13104-019-4380-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2019] [Accepted: 06/11/2019] [Indexed: 01/31/2023] Open
Abstract
Objectives Mycolicibacterium peregrinum, a rapidly growing mycobacterial species, can opportunistically infect humans and other animals. Although M. peregrinum infections in animals have been reported, the infection sources are unknown, as is information on its virulence and drug resistant genes, which limits our current understanding of this bacterium. To address this knowledge gap, we obtained draft genome sequences for two M. peregrinum isolates; one from a case of pig lymphadenitis and one from the pig farm’s soil. Data description We report here the draft genome sequences of M. peregrinum isolates 131_1 and 138 (6,451,733-bp and 6,479,047-bp). They were isolated from a pig with mesenteric lymph node lymphadenitis and from soil on the Japanese farm where the pig was reared. A sequence alignment identity score of 100% was obtained by in silico DNA–DNA hybridization of the two isolates, while 98.28% (isolate 131_1) and 98.27% (isolate 138) scores were recorded for hybridization with a human isolate. Both isolates carry arr-1, AAC(2′)-Ib, RbpA, mtrA and tap drug-resistance genes. Isolates 131_1 and 138 carry 234 and 236 putative virulence genes, respectively. Therefore, environment M. peregrinum is potentially drug resistant and can cause swine lymphadenitis. Our data provides valuable new information for future studies on nontuberculous mycobacteria.
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Affiliation(s)
- Tetsuya Komatsu
- Aichi Prefectural Chuo Livestock Hygiene Service Center, 1-306 Jizouno, Miaicho, Okazaki, 4440805, Japan
| | - Kenji Ohya
- Laboratory of Veterinary Microbiology, Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu, 5011193, Japan.,United Graduate School of Veterinary Sciences, Gifu University, 1-1 Yanagido, Gifu, 5011193, Japan.,Education and Research Center for Food Animal Health, Gifu University (GeFAH), 1-1 Yanagido, Gifu, 5011193, Japan.,Division of Microbiology, National Institute of Health Sciences, 3-25-26 Tonomachi, Kawasaki-ku, Kawasaki, 210-9501, Japan
| | - Kotaro Sawai
- Laboratory of Veterinary Microbiology, Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu, 5011193, Japan.,Viral Disease and Epidemiology Research Division, National Institute of Animal Health, National Agriculture Research Organization, 3-1-5 Kannondai, Tsukuba, Ibaraki, 3050856, Japan
| | - Justice Opare Odoi
- United Graduate School of Veterinary Sciences, Gifu University, 1-1 Yanagido, Gifu, 5011193, Japan
| | - Keiko Otsu
- Gifu Prefectural Chuo Livestock Hygiene Service Center, 1-1 Yanagido, Gifu, 5011112, Japan
| | - Atsushi Ota
- Data Science Center, Division of Biological Science, Nara Institute of Science and Technology, Ikoma, Nara, 6300192, Japan
| | - Toshihiro Ito
- Department of Microbiology, Graduate School of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto, 6068501, Japan.,Laboratory of Proteome Research, Proteome Research Center, National Institute of Biomedical Innovation, Ibaraki, Osaka, 567-0085, Japan
| | - Mikihiko Kawai
- Department of Microbiology, Graduate School of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto, 6068501, Japan
| | - Fumito Maruyama
- Department of Microbiology, Graduate School of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto, 6068501, Japan. .,Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Av. Francisco Salazar 01145, Temuco, 4811230, Chile.
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