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Zadel U, Cruzeiro C, Raj Durai AC, Nesme J, May R, Balázs H, Michalke B, Płaza G, Schröder P, Schloter M, Radl V. Exudates from Miscanthus x giganteus change the response of a root-associated Pseudomonas putida strain towards heavy metals. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 313:119989. [PMID: 36028079 DOI: 10.1016/j.envpol.2022.119989] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Revised: 08/11/2022] [Accepted: 08/13/2022] [Indexed: 06/15/2023]
Abstract
The composition of root exudates is modulated by several environmental factors, and it remains unclear how that affects beneficial rhizosphere or inoculated microorganisms under heavy metal (HM) contamination. Therefore, we evaluated the transcriptional response of Pseudomonas putida E36 (a Miscanthus x giganteus isolate with plant growth promotion-related properties) to Cd, Pb and Zn in an in vitro study implementing root exudates from M. x giganteus. To collect root exudates and analyse their composition plants were grown in a pot experiment under HM and control conditions. Our results indicated higher exudation rate for plants challenged with HM. Further, out of 29 organic acids identified and quantified in the root exudates, 8 of them were significantly influenced by HM (e.g., salicylic and terephthalic acid). The transcriptional response of P. putida E36 was significantly affected by the HM addition to the growth medium, increasing the expression of several efflux pumps and stress response-related functional units. The additional supplementation of the growth medium with root exudates from HM-challenged plants resulted in a downregulation of 29% of the functional units upregulated in P. putida E36 as a result of HM addition to the growth medium. Surprisingly, root exudates + HM downregulated the expression of P. putida E36 functional units related to plant colonization (e.g., chemotaxis, motility, biofilm formation) but upregulated its antibiotic and biocide resistance compared to the control treatment without HM. Our findings suggest that HM-induced changes in root exudation pattern may attract beneficial bacteria that are in turn awarded with organic nutrients, helping them cope with HM stress. However, it might affect the ability of these bacteria to colonize plants growing in HM polluted areas. Those findings may offer an insight for future in vivo studies contributing to improvements in phytoremediation measures.
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Affiliation(s)
- Urška Zadel
- Helmholtz Zentrum München, German Research Center for Environmental Health, Research Unit Comparative Microbiome Analysis, Ingolstädter Street 1, 85764, Neuherberg, Germany.
| | - Catarina Cruzeiro
- Helmholtz Zentrum München, German Research Center for Environmental Health, Research Unit Comparative Microbiome Analysis, Ingolstädter Street 1, 85764, Neuherberg, Germany.
| | - Abilash Chakravarthy Raj Durai
- Helmholtz Zentrum München, German Research Center for Environmental Health, Research Unit Comparative Microbiome Analysis, Ingolstädter Street 1, 85764, Neuherberg, Germany.
| | - Joseph Nesme
- University of Copenhagen, Department of Biology, Section for Microbiology, Universitetsparken 15, 2100 Copenhagen, Denmark.
| | - Robert May
- Labor Dr. Spranger & Partner, Lindberghstraße 9-13, 85051, Ingolstadt, Germany.
| | - Helga Balázs
- Helmholtz Zentrum München, German Research Center for Environmental Health, Research Unit Comparative Microbiome Analysis, Ingolstädter Street 1, 85764, Neuherberg, Germany.
| | - Bernhard Michalke
- Helmholtz Zentrum München, German Research Center for Environmental Health, Research Unit Analytical BioGeoChemistry, Ingolstädter Street 1, 85764, Neuherberg, Germany.
| | - Grażyna Płaza
- Silesian University of Technology, Faculty of Organization and Management, 26 Roosevelt street, 41-800 Zabrze, Poland.
| | - Peter Schröder
- Helmholtz Zentrum München, German Research Center for Environmental Health, Research Unit Comparative Microbiome Analysis, Ingolstädter Street 1, 85764, Neuherberg, Germany.
| | - Michael Schloter
- Helmholtz Zentrum München, German Research Center for Environmental Health, Research Unit Comparative Microbiome Analysis, Ingolstädter Street 1, 85764, Neuherberg, Germany.
| | - Viviane Radl
- Helmholtz Zentrum München, German Research Center for Environmental Health, Research Unit Comparative Microbiome Analysis, Ingolstädter Street 1, 85764, Neuherberg, Germany.
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Jałowiecki Ł, Krzymińska I, Górska M, Płaza G, Ratman-Kłosińska I. Effect of the freeze-drying process on the phenotypic diversity of Pseudomonas putida strains isolated from the interior of healthy roots of Sida hermaphrodita: Phenotype microarrays (PMs). Cryobiology 2020; 96:145-151. [PMID: 32702362 DOI: 10.1016/j.cryobiol.2020.07.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 07/15/2020] [Accepted: 07/15/2020] [Indexed: 11/30/2022]
Abstract
The objective of this study was to research the effect of the freeze-drying process on the metabolic changes of Pseudomonas putida strains (E41, E42, R85) isolated from the interior of Sida hermaphrodita roots with the use of the phenotypic microarrays (PM) technology. The proposed method of the freeze-drying process with inulin as component lycoprotectant demonstrated a high bacterial survival ratio (BSR) immediately after freeze-drying and storage after 12 months. While, after 360 days of freeze-drying BSR decreased to value of 74.38. Pseudomonas putida strains were assayed on microplates PM1-PM5, and PM9-PM13 testing 664 different substrates. However, no significant differences in the use of C substrates were observed either before or after the freeze drying process. An insignificant negative effect of the freeze-drying on the use of these substrates was observed. The utilization of N, P and S sources was low or showed no metabolic activity for most of the compounds after freeze-drying. The freeze-drying process increased the sensitivity of the bacteria to antibiotics and selected chemicals. In this study, the freeze-drying process decreased the metabolic activities of the tested strains and their resistance to antibiotics and chemicals.
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Affiliation(s)
- Łukasz Jałowiecki
- Environmental Microbiology Unit, Institute for Ecology of Industrial Areas, Kossutha 6, 40-844, Katowice, Poland
| | - Izabela Krzymińska
- Department of Microbiology, Institute of Microbial Technologies, NSZZ Solidarnosc 9 Av., 62-700, Turek, Poland
| | - Magdalena Górska
- ProBiotics Polska Magdalena Górska, Bratuszyn 21, 62-720, Brudzew, Poland
| | - Grażyna Płaza
- Environmental Microbiology Unit, Institute for Ecology of Industrial Areas, Kossutha 6, 40-844, Katowice, Poland.
| | - Izabela Ratman-Kłosińska
- Office of Projects Coordination, Marketing and Research Commercialisation, Institute for Ecology of Industrial Areas, Kossutha 6, 40-844, Katowice, Poland
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Bernat P, Nesme J, Paraszkiewicz K, Schloter M, Płaza G. Characterization of Extracellular Biosurfactants Expressed by a Pseudomonas putida Strain Isolated from the Interior of Healthy Roots from Sida hermaphrodita Grown in a Heavy Metal Contaminated Soil. Curr Microbiol 2019; 76:1320-1329. [PMID: 31432210 DOI: 10.1007/s00284-019-01757-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Revised: 07/11/2019] [Accepted: 08/09/2019] [Indexed: 10/26/2022]
Abstract
Pseudomonas putida E41 isolated from root interior of Sida hermaphrodita (grown on a field contaminated with heavy metals) showed high biosurfactant activity. In this paper, we describe data from mass spectrometry and genome analysis, to improve our understanding on the phenotypic properties of the strain. Supernatant derived from P. putida E41 liquid culture exhibited a strong decrease in the surface tension accompanied by the ability for emulsion stabilization. We identified extracellular lipopeptides, putisolvin I and II expression but did not detect rhamnolipids. Their presence was confirmed by matrix-assisted laser desorption and ionization (MALDI) TOF/TOF technique. Moreover, ten phospholipids (mainly phosphatidylethanolamines PE 33:1 and PE 32:1) which were excreted by vesicles were also detected. In contrast the bacterial cell pellet was dominated by phosphatidylglycerols (PGs), which were almost absent in the supernatant. It seems that the composition of extracellular (secreted to the environment) and cellular lipids in this strain differs. Long-read sequencing and complete genome reconstruction allowed the identification of a complete putisolvin biosynthesis pathway. In the genome of P. putida E41 were also found all genes involved in glycerophospholipid biosynthesis, and they are likely responsible for the production of detected phospholipids. Overall this is the first report describing the expression of extracellular lipopeptides (identified as putisolvins) and phospholipids by a P. putida strain, which might be explained by the need to adapt to the highly contaminated environment.
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Affiliation(s)
- Przemysław Bernat
- Department of Industrial Microbiology and Biotechnology, Faculty of Biology and Environmental Protection, University of Łódź, Banacha 12/16 street, 90-237, Łódź, Poland
| | - Joseph Nesme
- Comparative Microbiome Analysis, Helmholtz Zentrum München, 85764, Neuherberg, Germany.,Section of Microbiology, Department of Biology, Faculty of Science, University of Copenhagen, 2100, Copenhagen, Denmark
| | - Katarzyna Paraszkiewicz
- Department of Industrial Microbiology and Biotechnology, Faculty of Biology and Environmental Protection, University of Łódź, Banacha 12/16 street, 90-237, Łódź, Poland
| | - Michael Schloter
- Comparative Microbiome Analysis, Helmholtz Zentrum München, 85764, Neuherberg, Germany
| | - Grażyna Płaza
- Institute for Ecology of Industrial Areas, Unit of Environmental Microbiology, Kossutha 6, 40-844, Katowice, Poland.
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Udaondo Z, Ramos JL, Segura A, Krell T, Daddaoua A. Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators. Microb Biotechnol 2018; 11:442-454. [PMID: 29607620 PMCID: PMC5902321 DOI: 10.1111/1751-7915.13263] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Revised: 02/22/2018] [Accepted: 03/01/2018] [Indexed: 01/08/2023] Open
Abstract
Bacteria of the genus Pseudomonas are widespread in nature. In the last decades, members of this genus, especially Pseudomonas aeruginosa and Pseudomonas putida, have acquired great interest because of their interactions with higher organisms. Pseudomonas aeruginosa is an opportunistic pathogen that colonizes the lung of cystic fibrosis patients, while P. putida is a soil bacterium able to establish a positive interaction with the plant rhizosphere. Members of Pseudomonas genus have a robust metabolism for amino acids and organic acids as well as aromatic compounds; however, these microbes metabolize a very limited number of sugars. Interestingly, they have three-pronged metabolic system to generate 6-phosphogluconate from glucose suggesting an adaptation to efficiently consume this sugar. This review focuses on the description of the regulatory network of glucose utilization in Pseudomonas, highlighting the differences between P. putida and P. aeruginosa. Most interestingly, It is highlighted a functional link between glucose assimilation and exotoxin A production in P. aeruginosa. The physiological relevance of this connection remains unclear, and it needs to be established whether a similar relationship is also found in other bacteria.
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Affiliation(s)
- Zulema Udaondo
- Department of Biomedical Informatics, University of Arkansas for Medical Sciences, 4301W. Markham St., Slot 782, Little Rock, AR, 72205, USA
| | - Juan-Luis Ramos
- Department of Environmental Protection, Estación Experimental del Zaidín, C/ Profesor Albareda 1, E-18008, Granada, Spain
| | - Ana Segura
- Department of Environmental Protection, Estación Experimental del Zaidín, C/ Profesor Albareda 1, E-18008, Granada, Spain
| | - Tino Krell
- Department of Environmental Protection, Estación Experimental del Zaidín, C/ Profesor Albareda 1, E-18008, Granada, Spain
| | - Abdelali Daddaoua
- Department of Biochemistry and Molecular Biology II, Pharmacy School, Granada University, Granada, Spain
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