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For: Matta MK, Lioliou EE, Panagiotidis CH, Kyriakidis DA, Panagiotidis CA. Interactions of the antizyme AtoC with regulatory elements of the Escherichia coli atoDAEB operon. J Bacteriol 2007;189:6324-32. [PMID: 17616594 PMCID: PMC1951910 DOI: 10.1128/jb.00214-07] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
Number Cited by Other Article(s)
1
The AtoC family response regulator upregulates an operon encoding putative outer membrane proteins sorted by type IX secretion system in Porphyromonas gingivalis. J Oral Biosci 2023;65:80-87. [PMID: 36375735 DOI: 10.1016/j.job.2022.11.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2022] [Revised: 11/02/2022] [Accepted: 10/26/2022] [Indexed: 11/13/2022]
2
Guillén-Chable F, Avila Castro LA, Rodríguez-Escamilla Z, Martínez-Núñez MA. Insights into coastal microbial antibiotic resistome through a meta-transcriptomic approach in Yucatan. Front Microbiol 2022;13:972267. [PMID: 36325016 PMCID: PMC9618888 DOI: 10.3389/fmicb.2022.972267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2022] [Accepted: 09/26/2022] [Indexed: 11/21/2022]  Open
3
Zhu L, Gong T, Wood TL, Yamasaki R, Wood TK. σ54 -Dependent regulator DVU2956 switches Desulfovibrio vulgaris from biofilm formation to planktonic growth and regulates hydrogen sulfide production. Environ Microbiol 2019;21:3564-3576. [PMID: 31087603 DOI: 10.1111/1462-2920.14679] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2019] [Accepted: 05/11/2019] [Indexed: 11/30/2022]
4
Genome sequence and analysis of Escherichia coli production strain LS5218. Metab Eng Commun 2017;5:78-83. [PMID: 29188187 PMCID: PMC5699524 DOI: 10.1016/j.meteno.2017.10.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Revised: 09/29/2017] [Accepted: 10/31/2017] [Indexed: 01/06/2023]  Open
5
Rand JM, Pisithkul T, Clark RL, Thiede JM, Mehrer CR, Agnew DE, Campbell CE, Markley AL, Price MN, Ray J, Wetmore KM, Suh Y, Arkin AP, Deutschbauer AM, Amador-Noguez D, Pfleger BF. A metabolic pathway for catabolizing levulinic acid in bacteria. Nat Microbiol 2017;2:1624-1634. [PMID: 28947739 PMCID: PMC5705400 DOI: 10.1038/s41564-017-0028-z] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2017] [Accepted: 08/16/2017] [Indexed: 12/21/2022]
6
Nilgiriwala KS, Jiménez J, Rivera PM, Del Vecchio D. Synthetic tunable amplifying buffer circuit in E. coli. ACS Synth Biol 2015;4:577-84. [PMID: 25279430 DOI: 10.1021/sb5002533] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
7
Peng Q, Wang G, Liu G, Zhang J, Song F. Identification of metabolism pathways directly regulated by sigma(54) factor in Bacillus thuringiensis. Front Microbiol 2015;6:407. [PMID: 26029175 PMCID: PMC4428206 DOI: 10.3389/fmicb.2015.00407] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2015] [Accepted: 04/19/2015] [Indexed: 11/13/2022]  Open
8
Hendrickson EL, Wang T, Beck DAC, Dickinson BC, Wright CJ, J Lamont R, Hackett M. Proteomics of Fusobacterium nucleatum within a model developing oral microbial community. Microbiologyopen 2014;3:729-51. [PMID: 25155235 PMCID: PMC4234264 DOI: 10.1002/mbo3.204] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2014] [Revised: 07/01/2014] [Accepted: 07/08/2014] [Indexed: 11/29/2022]  Open
9
Lee FJ, Rusch DB, Stewart FJ, Mattila HR, Newton ILG. Saccharide breakdown and fermentation by the honey bee gut microbiome. Environ Microbiol 2014;17:796-815. [PMID: 24905222 DOI: 10.1111/1462-2920.12526] [Citation(s) in RCA: 160] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2014] [Revised: 05/23/2014] [Accepted: 05/23/2014] [Indexed: 11/30/2022]
10
Theodorou EC, Theodorou MC, Kyriakidis DA. Regulation of poly-(R)-(3-hydroxybutyrate-co-3-hydroxyvalerate) biosynthesis by the AtoSCDAEB regulon in phaCAB+ Escherichia coli. Appl Microbiol Biotechnol 2013;97:5259-74. [PMID: 23546423 DOI: 10.1007/s00253-013-4843-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2013] [Revised: 03/06/2013] [Accepted: 03/07/2013] [Indexed: 11/28/2022]
11
Theodorou MC, Kyriakidis DA. Calcium channels blockers inhibit the signal transduction through the AtoSC system in Escherichia coli. Eur J Pharm Sci 2012;47:84-96. [PMID: 22634222 DOI: 10.1016/j.ejps.2012.05.004] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2012] [Revised: 05/05/2012] [Accepted: 05/09/2012] [Indexed: 01/17/2023]
12
Involvement of AtoSC two-component system in Escherichia coli flagellar regulon. Amino Acids 2011;43:833-44. [PMID: 22083893 DOI: 10.1007/s00726-011-1140-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2011] [Accepted: 10/25/2011] [Indexed: 10/15/2022]
13
Filippou PS, Koini EN, Calogeropoulou T, Kalliakmani P, Panagiotidis CA, Kyriakidis DA. Regulation of the Escherichia coli AtoSC two component system by synthetic biologically active 5;7;8-trimethyl-1;4-benzoxazine analogues. Bioorg Med Chem 2011;19:5061-70. [DOI: 10.1016/j.bmc.2011.06.029] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2010] [Revised: 06/01/2011] [Accepted: 06/08/2011] [Indexed: 11/29/2022]
14
Krushkal J, Sontineni S, Leang C, Qu Y, Adkins RM, Lovley DR. Genome diversity of the TetR family of transcriptional regulators in a metal-reducing bacterial family Geobacteraceae and other microbial species. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 2011;15:495-506. [PMID: 21699403 DOI: 10.1089/omi.2010.0117] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
15
Pilalis E, Chatziioannou AA, Grigoroudis AI, Panagiotidis CA, Kolisis FN, Kyriakidis DA. Escherichia coli genome-wide promoter analysis: identification of additional AtoC binding target elements. BMC Genomics 2011;12:238. [PMID: 21569465 PMCID: PMC3118216 DOI: 10.1186/1471-2164-12-238] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2010] [Accepted: 05/13/2011] [Indexed: 11/16/2022]  Open
16
Theodorou EC, Theodorou MC, Kyriakidis DA. AtoSC two-component system is involved in cPHB biosynthesis through fatty acid metabolism in E. coli. Biochim Biophys Acta Gen Subj 2011;1810:561-8. [DOI: 10.1016/j.bbagen.2011.01.014] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2010] [Revised: 01/18/2011] [Accepted: 01/25/2011] [Indexed: 10/18/2022]
17
Papadopoulos G, Grigoroudis AI, Kyriakidis DA. Dimerization of the AtoC response regulator and modelling of its binding to DNA. J Mol Graph Model 2010;29:565-72. [PMID: 21115262 DOI: 10.1016/j.jmgm.2010.10.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2010] [Revised: 10/12/2010] [Accepted: 10/18/2010] [Indexed: 11/28/2022]
18
Zhang JB, Pan ZX, Lin F, Ma XS, Liu HL. [Biochemical methods for the analysis of DNA-protein interactions]. YI CHUAN = HEREDITAS 2009;31:325-336. [PMID: 19273448 DOI: 10.3724/sp.j.1005.2009.00325] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
19
Kyriakidis DA, Tiligada E. Signal transduction and adaptive regulation through bacterial two-component systems: the Escherichia coli AtoSC paradigm. Amino Acids 2009;37:443-58. [PMID: 19198978 DOI: 10.1007/s00726-009-0241-z] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2008] [Accepted: 01/12/2009] [Indexed: 02/07/2023]
20
Extracellular Ca2+ transients affect poly-(R)-3-hydroxybutyrate regulation by the AtoS-AtoC system in Escherichia coli. Biochem J 2009;417:667-72. [DOI: 10.1042/bj20081169] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
21
High-mobility group protein A1 binds herpes simplex virus gene regulatory sequences and affects their expression. Arch Virol 2008;153:1251-62. [PMID: 18506571 DOI: 10.1007/s00705-008-0112-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2008] [Accepted: 03/31/2008] [Indexed: 10/22/2022]
22
Functional characterization of the histidine kinase of the E. coli two-component signal transduction system AtoS-AtoC. Biochim Biophys Acta Gen Subj 2008;1780:1023-31. [PMID: 18534200 DOI: 10.1016/j.bbagen.2008.05.002] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2007] [Revised: 05/05/2008] [Accepted: 05/05/2008] [Indexed: 11/22/2022]
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