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Cao T, Bai Y, Buschbeck P, Tan Q, Cantrell MB, Chen Y, Jiang Y, Liu RZ, Ries NK, Shi X, Sun Y, Ware MA, Yang F, Zhang H, Han J, Zhang L, Huang J, Lohr M, Peers G, Li X. An unexpected hydratase synthesizes the green light-absorbing pigment fucoxanthin. THE PLANT CELL 2023; 35:3053-3072. [PMID: 37100425 PMCID: PMC10396388 DOI: 10.1093/plcell/koad116] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 04/05/2023] [Accepted: 04/06/2023] [Indexed: 06/19/2023]
Abstract
The ketocarotenoid fucoxanthin and its derivatives can absorb blue-green light enriched in marine environments. Fucoxanthin is widely adopted by phytoplankton species as a main light-harvesting pigment, in contrast to land plants that primarily employ chlorophylls. Despite its supreme abundance in the oceans, the last steps of fucoxanthin biosynthesis have remained elusive. Here, we identified the carotenoid isomerase-like protein CRTISO5 as the diatom fucoxanthin synthase that is related to the carotenoid cis-trans isomerase CRTISO from land plants but harbors unexpected enzymatic activity. A crtiso5 knockout mutant in the model diatom Phaeodactylum tricornutum completely lacked fucoxanthin and accumulated the acetylenic carotenoid phaneroxanthin. Recombinant CRTISO5 converted phaneroxanthin into fucoxanthin in vitro by hydrating its carbon-carbon triple bond, instead of functioning as an isomerase. Molecular docking and mutational analyses revealed residues essential for this activity. Furthermore, a photophysiological characterization of the crtiso5 mutant revealed a major structural and functional role of fucoxanthin in photosynthetic pigment-protein complexes of diatoms. As CRTISO5 hydrates an internal alkyne physiologically, the enzyme has unique potential for biocatalytic applications. The discovery of CRTISO5 illustrates how neofunctionalization leads to major diversification events in evolution of photosynthetic mechanisms and the prominent brown coloration of most marine photosynthetic eukaryotes.
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Affiliation(s)
- Tianjun Cao
- Key Laboratory of Growth Regulation and Translational Research of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou 310024, China
- Institute of Biology, Westlake Institute for Advanced Study, Hangzhou 310024, China
| | - Yu Bai
- Department of Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Paul Buschbeck
- Institut für Molekulare Physiologie, Johannes Gutenberg-University, 55099 Mainz, Germany
| | - Qiaozhu Tan
- Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou 310024, China
| | - Michael B Cantrell
- Department of Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Yinjuan Chen
- Key Laboratory of Precise Synthesis of Functional Molecules of Zhejiang Province, School of Science, Instrumentation and Service Center for Molecular Sciences, Westlake University, Hangzhou 310024, China
| | - Yanyou Jiang
- Key Laboratory of Growth Regulation and Translational Research of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou 310024, China
| | - Run-Zhou Liu
- Key Laboratory of Precise Synthesis of Functional Molecules of Zhejiang Province, School of Science, Westlake University, Hangzhou 310024, China
| | - Nana K Ries
- Institut für Molekulare Physiologie, Johannes Gutenberg-University, 55099 Mainz, Germany
| | - Xiaohuo Shi
- Key Laboratory of Precise Synthesis of Functional Molecules of Zhejiang Province, School of Science, Instrumentation and Service Center for Molecular Sciences, Westlake University, Hangzhou 310024, China
| | - Yan Sun
- College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315211, China
| | - Maxwell A Ware
- Department of Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Fenghua Yang
- Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou 310024, China
| | - Huan Zhang
- Key Laboratory of Growth Regulation and Translational Research of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou 310024, China
- Institute of Biology, Westlake Institute for Advanced Study, Hangzhou 310024, China
| | - Jichang Han
- College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315211, China
| | - Lihan Zhang
- Key Laboratory of Precise Synthesis of Functional Molecules of Zhejiang Province, School of Science, Westlake University, Hangzhou 310024, China
- Institute of Natural Sciences, Westlake Institute for Advanced Study, Hangzhou 310024, China
| | - Jing Huang
- Institute of Biology, Westlake Institute for Advanced Study, Hangzhou 310024, China
- Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou 310024, China
- Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou 310024, China
| | - Martin Lohr
- Institut für Molekulare Physiologie, Johannes Gutenberg-University, 55099 Mainz, Germany
| | - Graham Peers
- Department of Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Xiaobo Li
- Key Laboratory of Growth Regulation and Translational Research of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou 310024, China
- Institute of Biology, Westlake Institute for Advanced Study, Hangzhou 310024, China
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2
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The effect of solvent on the optical properties of myxoxanthophyll from Synechocystis sp. PCC6803. J Mol Liq 2023. [DOI: 10.1016/j.molliq.2023.121367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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3
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Current knowledge and recent advances in understanding metabolism of the model cyanobacterium Synechocystis sp. PCC 6803. Biosci Rep 2021; 40:222317. [PMID: 32149336 PMCID: PMC7133116 DOI: 10.1042/bsr20193325] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 03/05/2020] [Accepted: 03/06/2020] [Indexed: 02/06/2023] Open
Abstract
Cyanobacteria are key organisms in the global ecosystem, useful models for studying metabolic and physiological processes conserved in photosynthetic organisms, and potential renewable platforms for production of chemicals. Characterizing cyanobacterial metabolism and physiology is key to understanding their role in the environment and unlocking their potential for biotechnology applications. Many aspects of cyanobacterial biology differ from heterotrophic bacteria. For example, most cyanobacteria incorporate a series of internal thylakoid membranes where both oxygenic photosynthesis and respiration occur, while CO2 fixation takes place in specialized compartments termed carboxysomes. In this review, we provide a comprehensive summary of our knowledge on cyanobacterial physiology and the pathways in Synechocystis sp. PCC 6803 (Synechocystis) involved in biosynthesis of sugar-based metabolites, amino acids, nucleotides, lipids, cofactors, vitamins, isoprenoids, pigments and cell wall components, in addition to the proteins involved in metabolite transport. While some pathways are conserved between model cyanobacteria, such as Synechocystis, and model heterotrophic bacteria like Escherichia coli, many enzymes and/or pathways involved in the biosynthesis of key metabolites in cyanobacteria have not been completely characterized. These include pathways required for biosynthesis of chorismate and membrane lipids, nucleotides, several amino acids, vitamins and cofactors, and isoprenoids such as plastoquinone, carotenoids, and tocopherols. Moreover, our understanding of photorespiration, lipopolysaccharide assembly and transport, and degradation of lipids, sucrose, most vitamins and amino acids, and haem, is incomplete. We discuss tools that may aid our understanding of cyanobacterial metabolism, notably CyanoSource, a barcoded library of targeted Synechocystis mutants, which will significantly accelerate characterization of individual proteins.
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Baers LL, Breckels LM, Mills LA, Gatto L, Deery MJ, Stevens TJ, Howe CJ, Lilley KS, Lea-Smith DJ. Proteome Mapping of a Cyanobacterium Reveals Distinct Compartment Organization and Cell-Dispersed Metabolism. PLANT PHYSIOLOGY 2019; 181:1721-1738. [PMID: 31578229 PMCID: PMC6878006 DOI: 10.1104/pp.19.00897] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Accepted: 09/11/2019] [Indexed: 05/23/2023]
Abstract
Cyanobacteria are complex prokaryotes, incorporating a Gram-negative cell wall and internal thylakoid membranes (TMs). However, localization of proteins within cyanobacterial cells is poorly understood. Using subcellular fractionation and quantitative proteomics, we produced an extensive subcellular proteome map of an entire cyanobacterial cell, identifying ∼67% of proteins in Synechocystis sp. PCC 6803, ∼1000 more than previous studies. Assigned to six specific subcellular regions were 1,712 proteins. Proteins involved in energy conversion localized to TMs. The majority of transporters, with the exception of a TM-localized copper importer, resided in the plasma membrane (PM). Most metabolic enzymes were soluble, although numerous pathways terminated in the TM (notably those involved in peptidoglycan monomer, NADP+, heme, lipid, and carotenoid biosynthesis) or PM (specifically, those catalyzing lipopolysaccharide, molybdopterin, FAD, and phylloquinol biosynthesis). We also identified the proteins involved in the TM and PM electron transport chains. The majority of ribosomal proteins and enzymes synthesizing the storage compound polyhydroxybuyrate formed distinct clusters within the data, suggesting similar subcellular distributions to one another, as expected for proteins operating within multicomponent structures. Moreover, heterogeneity within membrane regions was observed, indicating further cellular complexity. Cyanobacterial TM protein localization was conserved in Arabidopsis (Arabidopsis thaliana) chloroplasts, suggesting similar proteome organization in more developed photosynthetic organisms. Successful application of this technique in Synechocystis suggests it could be applied to mapping the proteomes of other cyanobacteria and single-celled organisms. The organization of the cyanobacterial cell revealed here substantially aids our understanding of these environmentally and biotechnologically important organisms.
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Affiliation(s)
- Laura L Baers
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom
| | - Lisa M Breckels
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom
- Computational Proteomics Unit, Cambridge Centre for Proteomics, University of Cambridge, Cambridge CB2 1QW, United Kingdom
| | - Lauren A Mills
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, United Kingdom
| | - Laurent Gatto
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom
- Computational Proteomics Unit, Cambridge Centre for Proteomics, University of Cambridge, Cambridge CB2 1QW, United Kingdom
| | - Michael J Deery
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom
| | - Tim J Stevens
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH United Kingdom
| | - Christopher J Howe
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom
| | - Kathryn S Lilley
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom
| | - David J Lea-Smith
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, United Kingdom
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Kłodawska K, Bujas A, Turos-Cabal M, Żbik P, Fu P, Malec P. Effect of growth temperature on biosynthesis and accumulation of carotenoids in cyanobacterium Anabaena sp. PCC 7120 under diazotrophic conditions. Microbiol Res 2019; 226:34-40. [PMID: 31284942 DOI: 10.1016/j.micres.2019.05.003] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2019] [Revised: 05/12/2019] [Accepted: 05/15/2019] [Indexed: 12/17/2022]
Abstract
Carotenoid composition has been studied in mesophilic, nitrogen-fixing cyanobacterium Anabaena sp. PCC7120 grown photoautotrophically, under diazotrophic conditions at four different temperatures (15 °C, 23 °C, 30 °C and 37 °C). The relative accumulation of chlorophyll, carotenoids and proteins was the highest at temperature of 23 °C. At a suboptimal temperature (15 °C) β-carotene was the dominant carotenoid compound, whereas the increase in temperature caused ketocarotenoids (echinenone, canthaxanthin, keto-myxoxanthophyll) to accumulate. A significant increase in the accumulation of phytoene synthase (CrtB) transcript was observed at both extreme growth temperatures (15 °C and 37 °C). The relative amount of β-carotene ketolase (CrtW) transcript directly corresponded to the accumulation of its product (keto-myxoxanthophyll) with a maximum at 30 °C and a profound decrease at 37 °C, whereas the transcription level of β-carotene ketolase (CrtO) was significantly decreased only at a suboptimal temperature (15 °C). These results show that temperature affects the functioning of the carotenoid biosynthesis pathway in Anabaena cells under photoautotrophic growth. Specifically, the balance between β-carotene and ketocarotenoids is altered according to temperature conditions. The transcriptional regulation of genes encoding enzymes active both at the early (CrtB) and the final steps (CrtO, CrtW) of the carotenoid biosynthetic pathway may participate in the acclimation mechanism of cyanobacteria to low and high temperatures.
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Affiliation(s)
- Kinga Kłodawska
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, 30-387, Kraków, Poland
| | - Anna Bujas
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, 30-387, Kraków, Poland
| | - Maria Turos-Cabal
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, 30-387, Kraków, Poland
| | - Paweł Żbik
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, 30-387, Kraków, Poland
| | - Pengcheng Fu
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University Haikou, Hainan Province, 570228 China
| | - Przemysław Malec
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, 30-387, Kraków, Poland.
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6
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Huang JJ, Lin S, Xu W, Cheung PCK. Occurrence and biosynthesis of carotenoids in phytoplankton. Biotechnol Adv 2017; 35:597-618. [DOI: 10.1016/j.biotechadv.2017.05.001] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Revised: 04/13/2017] [Accepted: 05/11/2017] [Indexed: 01/08/2023]
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7
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Liang MH, Zhu J, Jiang JG. Carotenoids biosynthesis and cleavage related genes from bacteria to plants. Crit Rev Food Sci Nutr 2017; 58:2314-2333. [PMID: 28609133 DOI: 10.1080/10408398.2017.1322552] [Citation(s) in RCA: 65] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Carotenoids are essential for photosynthesis and photoprotection in photosynthetic organisms and beneficial for human health. Apocarotenoids derived from carotenoid degradation can serve critical functions including hormones, volatiles, and signals. They have been used commercially as food colorants, animal feed supplements, and nutraceuticals for cosmetic and pharmaceutical purposes. This review focuses on the molecular evolution of carotenogenic enzymes and carotenoid cleavage oxygenases (CCOs) from bacteria, fungi, cyanobacteria, algae, and plants. The diversity of carotenoids and apocarotenoids as well as their complicated biosynthetic pathway in different species can shed light on the history of early molecular evolution. Some carotenogenic genes (such as phytoene synthases) have high protein sequence similarity from bacteria to land plants, but some (such as phytoene desaturases, lycopene cyclases, carotenoid hydroxylases, and CCOs) have low similarity. The broad diversity of apocarotenoid volatile compounds can be attributed to large numbers of carotenoid precursors and the various cleavage sites catalyzed by CCOs enzymes. A variety of carotenogenic enzymes and CCOs indicate the functional diversification of carotenoids and apocrotenoids in different species. New carotenoids, new apocarotenoids, new carotenogenic enzymes, new CCOs, and new pathways still need to be explored.
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Affiliation(s)
- Ming-Hua Liang
- a College of Food Science and Engineering, South China University of Technology , Guangzhou , China.,b Department of Plant Science and Landscape Architecture , University of Maryland , College Park , Maryland , USA
| | - Jianhua Zhu
- b Department of Plant Science and Landscape Architecture , University of Maryland , College Park , Maryland , USA.,c College of Bioscience and Biotechnology, Hunan Agricultural University , Changsha , China.,d School of Biotechnology, Jiangsu University of Science and Technology , Zhenjiang , China
| | - Jian-Guo Jiang
- a College of Food Science and Engineering, South China University of Technology , Guangzhou , China
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8
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Kosourov S, Murukesan G, Jokela J, Allahverdiyeva Y. Carotenoid Biosynthesis in Calothrix sp. 336/3: Composition of Carotenoids on Full Medium, During Diazotrophic Growth and After Long-Term H2 Photoproduction. PLANT & CELL PHYSIOLOGY 2016; 57:2269-2282. [PMID: 27519311 DOI: 10.1093/pcp/pcw143] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2015] [Accepted: 08/06/2016] [Indexed: 06/06/2023]
Abstract
The carotenoid composition of the filamentous heterocystous N2-fixing cyanobacterium Calothrix sp. 336/3 was investigated under three conditions: in full medium (non-diazotrophic growth); in the absence of combined nitrogen (diazotrophic growth); and after long-term H2 photoproduction (diazotrophic medium and absence of nitrogen in the atmosphere). Anabaena sp. PCC 7120 and its ΔhupL mutant with disrupted uptake hydrogenase were used as reference strains. Analysis of identified carotenoids and enzymes involved in carotenogenesis showed the presence of three distinct biosynthetic pathways in Calothrix sp. 336/3. The first one is directed towards biosynthesis of myxoxanthophylls, such as myxol 2'-methylpentoside and 2-hydroxymyxol 2'-methylpentoside. The second pathway results in production of hydroxylated carotenoids, such as zeaxanthin, caloxanthin and nostoxanthin, and the last pathway is responsible for biosynthesis of echinenone and hydroxylated forms of ketocarotenoids, such as 3'-hydroxyechinenone and adonixanthin. We found that carotenogenesis in filamentous heterocystous cyanobacteria varies depending on the nitrogen status of the cultures, with significant accumulation of echinenone during diazotrophic growth at the expense of β-carotene. Under the severe N deficiency and high CO2 supply, which leads to efficient H2 photoproduction, cyanobacteria degrade echinenone and β-carotene, and accumulate glycosylated and hydroxylated carotenoids, such as myxol (or ketomyxol) 2'-methylpentosides, 3'-hydroxyechinenone and zeaxanthin. We suggest that the stability of the photosynthetic apparatus in Calothrix sp. 336/3 cells under N deficiency and high carbon conditions, which also appeared as the partial recovery of the pigment composition by the end of the long-term (∼1 month) H2 photoproduction process, might be mediated by a high content of hydroxycarotenoids.
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Affiliation(s)
- Sergey Kosourov
- Molecular Plant Biology, Department of Biochemistry, University of Turku, Turku, Finland
| | - Gayathri Murukesan
- Molecular Plant Biology, Department of Biochemistry, University of Turku, Turku, Finland
| | - Jouni Jokela
- Division of Microbiology and Biotechnology, Department of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland
| | - Yagut Allahverdiyeva
- Molecular Plant Biology, Department of Biochemistry, University of Turku, Turku, Finland
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9
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Lea-Smith DJ, Ortiz-Suarez ML, Lenn T, Nürnberg DJ, Baers LL, Davey MP, Parolini L, Huber RG, Cotton CAR, Mastroianni G, Bombelli P, Ungerer P, Stevens TJ, Smith AG, Bond PJ, Mullineaux CW, Howe CJ. Hydrocarbons Are Essential for Optimal Cell Size, Division, and Growth of Cyanobacteria. PLANT PHYSIOLOGY 2016; 172:1928-1940. [PMID: 27707888 PMCID: PMC5100757 DOI: 10.1104/pp.16.01205] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2016] [Accepted: 10/03/2016] [Indexed: 05/04/2023]
Abstract
Cyanobacteria are intricately organized, incorporating an array of internal thylakoid membranes, the site of photosynthesis, into cells no larger than other bacteria. They also synthesize C15-C19 alkanes and alkenes, which results in substantial production of hydrocarbons in the environment. All sequenced cyanobacteria encode hydrocarbon biosynthesis pathways, suggesting an important, undefined physiological role for these compounds. Here, we demonstrate that hydrocarbon-deficient mutants of Synechococcus sp. PCC 7002 and Synechocystis sp. PCC 6803 exhibit significant phenotypic differences from wild type, including enlarged cell size, reduced growth, and increased division defects. Photosynthetic rates were similar between strains, although a minor reduction in energy transfer between the soluble light harvesting phycobilisome complex and membrane-bound photosystems was observed. Hydrocarbons were shown to accumulate in thylakoid and cytoplasmic membranes. Modeling of membranes suggests these compounds aggregate in the center of the lipid bilayer, potentially promoting membrane flexibility and facilitating curvature. In vivo measurements confirmed that Synechococcus sp. PCC 7002 mutants lacking hydrocarbons exhibit reduced thylakoid membrane curvature compared to wild type. We propose that hydrocarbons may have a role in inducing the flexibility in membranes required for optimal cell division, size, and growth, and efficient association of soluble and membrane bound proteins. The recent identification of C15-C17 alkanes and alkenes in microalgal species suggests hydrocarbons may serve a similar function in a broad range of photosynthetic organisms.
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Affiliation(s)
- David J Lea-Smith
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.);
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.);
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.);
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.);
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.);
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.);
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Maite L Ortiz-Suarez
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Tchern Lenn
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Dennis J Nürnberg
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Laura L Baers
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Matthew P Davey
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Lucia Parolini
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Roland G Huber
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Charles A R Cotton
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Giulia Mastroianni
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Paolo Bombelli
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Petra Ungerer
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Tim J Stevens
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Alison G Smith
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Peter J Bond
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Conrad W Mullineaux
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
| | - Christopher J Howe
- Department of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom (D.J.L.-S., L.L.B., C.A.R.C., P.B., C.J.H.)
- Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom (M.L.O.-S., P.J.B.)
- School of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom (T.L., D.J.N., G.M., P.U., C.W.M.)
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (M.P.D., A.G.S.)
- Department of Physics, University of Cambridge, Cambridge CB3 0HE, United Kingdom (L.P.)
- Bioinformatics Institute, A*STAR, Singapore 138671 (R.G.H., P.J.B.)
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (T.J.S.); and
- National University of Singapore, Department of Biological Sciences, Singapore 117543 (P.J.B.)
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10
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Melnicki MR, Leverenz RL, Sutter M, López-Igual R, Wilson A, Pawlowski EG, Perreau F, Kirilovsky D, Kerfeld CA. Structure, Diversity, and Evolution of a New Family of Soluble Carotenoid-Binding Proteins in Cyanobacteria. MOLECULAR PLANT 2016; 9:1379-1394. [PMID: 27392608 DOI: 10.1016/j.molp.2016.06.009] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Revised: 05/25/2016] [Accepted: 06/20/2016] [Indexed: 05/15/2023]
Abstract
Using a phylogenomic approach, we have identified and subclassified a new family of carotenoid-binding proteins. These proteins have sequence homology to the N-terminal domain (NTD) of the Orange Carotenoid Protein (OCP), and are referred to as Helical Carotenoid Proteins (HCPs). These proteins comprise at least nine distinct clades and are found in diverse organisms, frequently as multiple paralogs representing the distinct clades. These seem to be out-paralogs maintained from ancient duplications associated with subfunctionalization. All of the HCPs share conservation of the residues for carotenoid binding, and we confirm that carotenoid binding is a fundamental property of HCPs. We solved two crystal structures of the Nostoc sp. PCC 7120 HCP1 protein, each binding a different carotenoid, suggesting that the proteins flexibly bind a range of carotenoids. Based on a comprehensive phylogenetic analysis, we propose that one of the HCP subtypes is likely the evolutionary ancestor of the NTD of the OCP, which arose following a domain fusion event. However, we predict that the majority of HCPs have functions distinct from the NTD of the OCP. Our results demonstrate that the HCPs are a new family of functionally diverse carotenoid-binding proteins found among ecophysiologically diverse cyanobacteria.
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Affiliation(s)
- Matthew R Melnicki
- Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Ryan L Leverenz
- MSU-DOE Plant Research Laboratory, Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
| | - Markus Sutter
- Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; MSU-DOE Plant Research Laboratory, Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
| | - Rocío López-Igual
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette, France; Commissariat à l'Energie Atomique (CEA), Institut de Biologie et Technologies de Saclay (iBiTec-S), 91191 Gif-sur-Yvette, France
| | - Adjélé Wilson
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette, France; Commissariat à l'Energie Atomique (CEA), Institut de Biologie et Technologies de Saclay (iBiTec-S), 91191 Gif-sur-Yvette, France
| | - Emily G Pawlowski
- MSU-DOE Plant Research Laboratory, Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
| | - François Perreau
- INRA, Institut Jean-Pierre Bourgin, UMR 1318, ERL CNRS 3559, Saclay Plant Sciences, RD10, 78026 Versailles, France
| | - Diana Kirilovsky
- Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette, France; Commissariat à l'Energie Atomique (CEA), Institut de Biologie et Technologies de Saclay (iBiTec-S), 91191 Gif-sur-Yvette, France
| | - Cheryl A Kerfeld
- Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; MSU-DOE Plant Research Laboratory, Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
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11
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Autenrieth C, Ghosh R. Random mutagenesis and overexpression of rhodopin-3,4-desaturase allows the production of highly conjugated carotenoids in Rhodospirillum rubrum. Arch Biochem Biophys 2015; 572:134-141. [DOI: 10.1016/j.abb.2015.01.023] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2014] [Revised: 01/23/2015] [Accepted: 01/24/2015] [Indexed: 12/01/2022]
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12
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Kłodawska K, Kovács L, Várkonyi Z, Kis M, Sozer Ö, Laczkó-Dobos H, Kóbori O, Domonkos I, Strzałka K, Gombos Z, Malec P. Elevated Growth Temperature Can Enhance Photosystem I Trimer Formation and Affects Xanthophyll Biosynthesis in Cyanobacterium Synechocystis sp. PCC6803 Cells. ACTA ACUST UNITED AC 2014; 56:558-71. [DOI: 10.1093/pcp/pcu199] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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13
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Roles of xanthophyll carotenoids in protection against photoinhibition and oxidative stress in the cyanobacterium Synechococcus sp. strain PCC 7002. Arch Biochem Biophys 2010; 504:86-99. [PMID: 20638360 DOI: 10.1016/j.abb.2010.07.007] [Citation(s) in RCA: 87] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2010] [Revised: 06/26/2010] [Accepted: 07/10/2010] [Indexed: 11/21/2022]
Abstract
Synechococcus sp. strain PCC 7002 is a robust, genetically tractable cyanobacterium that produces six different xanthophyll carotenoids (zeaxanthin, cryptoxanthin, myxoxanthophyll (myxol-2'-fucoside), echinenone, 3'-hydroxyechinenone, and synechoxanthin) and tolerates many environmental stresses, including high light intensities. Targeted mutations were introduced to block the branches of the carotenoid biosynthetic pathway leading to specific xanthophylls, and a mutant lacking all xanthophylls was constructed. Some of the mutants showed severe growth defects at high light intensities, and multi-locus mutants had somewhat lower chlorophyll contents and lower photosystem I levels. The results suggested that xanthophylls, particularly zeaxanthin and echinenone, might play regulatory roles in thylakoid biogenesis. Measurements of reactive oxygen (ROS) and nitrogen (RNS) species in the mutants showed that all xanthophylls participate in preventing ROS/RNS accumulation and that a mutant lacking all xanthophylls accumulated very high levels of ROS/RNS. Results from transcription profiling showed that mRNA levels for most genes encoding the enzymes of carotenogenesis are significantly more abundant after exposure to high light. These studies indicated that all xanthophylls contribute to protection against photo-oxidative stress.
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14
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The biosynthetic pathway for myxol-2' fucoside (myxoxanthophyll) in the cyanobacterium Synechococcus sp. strain PCC 7002. J Bacteriol 2009; 191:3292-300. [PMID: 19304845 DOI: 10.1128/jb.00050-09] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Synechococcus sp. strain PCC 7002 produces a variety of carotenoids, which comprise predominantly dicylic beta-carotene and two dicyclic xanthophylls, zeaxanthin and synechoxanthin. However, this cyanobacterium also produces a monocyclic myxoxanthophyll, which was identified as myxol-2' fucoside. Compared to the carotenoid glycosides produced by diverse microorganisms, cyanobacterial myxoxanthophyll and closely related compounds are unusual because they are glycosylated on the 2'-OH rather than on the 1'-OH position of the psi end of the molecule. In this study, the genes encoding two enzymes that modify the psi end of myxoxanthophyll in Synechococcus sp. strain PCC 7002 were identified. Mutational and biochemical studies showed that open reading frame SynPCC7002_A2032, renamed cruF, encodes a 1',2'-hydroxylase [corrected] and that open reading frame SynPCC7002_A2031, renamed cruG, encodes a 2'-O-glycosyltransferase. The enzymatic activity of CruF was verified by chemical characterization of the carotenoid products synthesized when cruF was expressed in a lycopene-producing strain of Escherichia coli. Database searches showed that homologs of cruF and cruG occur in the genomes of all sequenced cyanobacterial strains that are known to produce myxol or the acylic xanthophyll oscillaxanthin. The genomes of many other bacteria that produce hydroxylated carotenoids but do not contain crtC homologs also contain cruF orthologs. Based upon observable intermediates, a complete biosynthetic pathway for myxoxanthophyll is proposed. This study expands the suite of enzymes available for metabolic engineering of carotenoid biosynthetic pathways for biotechnological applications.
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15
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Domonkos I, Malec P, Laczko-Dobos H, Sozer O, Klodawska K, Wada H, Strzalka K, Gombos Z. Phosphatidylglycerol depletion induces an increase in myxoxanthophyll biosynthetic activity in Synechocystis PCC6803 cells. PLANT & CELL PHYSIOLOGY 2009; 50:374-82. [PMID: 19131356 DOI: 10.1093/pcp/pcn204] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Phosphatidylglycerol (PG) depletion suppressed the oxygen-evolving activity of Synechocystis PCC6803 pgsA mutant cells. Shortage of PG led to decreased photosynthetic activity, which, similar to the effect of high light exposure, is likely to generate the production of reactive oxygen species (ROS) or free radicals. Protection of the PG-depleted cells against light-induced damage increased the echinenone and myxoxanthophyll content of the cells. The increased carotenoid content was localized in a soluble fraction of the cells as well as in isolated thylakoid and cytoplasmic membranes. The soluble carotenoid fraction contained carotene derivatives, which may bind to proteins. These carotene-protein complexes are similar to orange carotenoid protein that is involved in yielding protection against free radicals and ROS. An increase in the content of myxoxanthophyll and echinenone upon PG depletion suggests that PG depletion regulates the biosynthetic pathway of specific carotenoids.
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Affiliation(s)
- Ildiko Domonkos
- Institute of Plant Biology, Biological Research Center, Hungarian Academy of Sciences, Szeged, Hungary
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16
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Tian B, Sun Z, Xu Z, Shen S, Wang H, Hua Y. Carotenoid 3′,4′-desaturase is involved in carotenoid biosynthesis in the radioresistant bacterium Deinococcus radiodurans. Microbiology (Reading) 2008; 154:3697-3706. [DOI: 10.1099/mic.0.2008/021071-0] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- Bing Tian
- Key Laboratory for Nuclear-Agricultural Sciences of Chinese Ministry of Agriculture and Zhejiang Province, Institute of Nuclear-Agricultural Sciences, Zhejiang University, 310029 Hangzhou, PR China
| | - Zongtao Sun
- Key Laboratory for Nuclear-Agricultural Sciences of Chinese Ministry of Agriculture and Zhejiang Province, Institute of Nuclear-Agricultural Sciences, Zhejiang University, 310029 Hangzhou, PR China
| | - Zhenjian Xu
- Key Laboratory for Nuclear-Agricultural Sciences of Chinese Ministry of Agriculture and Zhejiang Province, Institute of Nuclear-Agricultural Sciences, Zhejiang University, 310029 Hangzhou, PR China
| | - Shaochuan Shen
- Key Laboratory for Nuclear-Agricultural Sciences of Chinese Ministry of Agriculture and Zhejiang Province, Institute of Nuclear-Agricultural Sciences, Zhejiang University, 310029 Hangzhou, PR China
| | - Hu Wang
- Key Laboratory for Nuclear-Agricultural Sciences of Chinese Ministry of Agriculture and Zhejiang Province, Institute of Nuclear-Agricultural Sciences, Zhejiang University, 310029 Hangzhou, PR China
| | - Yuejin Hua
- Key Laboratory for Nuclear-Agricultural Sciences of Chinese Ministry of Agriculture and Zhejiang Province, Institute of Nuclear-Agricultural Sciences, Zhejiang University, 310029 Hangzhou, PR China
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17
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The Biosynthetic pathway for synechoxanthin, an aromatic carotenoid synthesized by the euryhaline, unicellular cyanobacterium Synechococcus sp. strain PCC 7002. J Bacteriol 2008; 190:7966-74. [PMID: 18849428 DOI: 10.1128/jb.00985-08] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The euryhaline, unicellular cyanobacterium Synechococcus sp. strain PCC 7002 produces the dicyclic aromatic carotenoid synechoxanthin (chi,chi-caroten-18,18'-dioic acid) as a major pigment (>15% of total carotenoid) and when grown to stationary phase also accumulates small amounts of renierapurpurin (chi,chi-carotene) (J. E. Graham, J. T. J. Lecomte, and D. A. Bryant, J. Nat. Prod. 71:1647-1650, 2008). Two genes that were predicted to encode enzymes involved in the biosynthesis of synechoxanthin were identified by comparative genomics, and these genes were insertionally inactivated in Synechococcus sp. strain PCC 7002 to verify their function. The cruE gene (SYNPCC7002_A1248) encodes beta-carotene desaturase/methyltransferase, which converts beta-carotene to renierapurpurin. The cruH gene (SYNPCC7002_A2246) encodes an enzyme that is minimally responsible for the hydroxylation/oxidation of the C-18 and C-18' methyl groups of renierapurpurin. Based on observed and biochemically characterized intermediates, a complete pathway for synechoxanthin biosynthesis is proposed.
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18
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Substrate specificities and availability of fucosyltransferase and beta-carotene hydroxylase for myxol 2'-fucoside synthesis in Anabaena sp. strain PCC 7120 compared with Synechocystis sp. strain PCC 6803. J Bacteriol 2008; 190:6726-33. [PMID: 18708496 DOI: 10.1128/jb.01881-07] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
To elucidate the biosynthetic pathways of carotenoids, especially myxol 2'-glycosides, in cyanobacteria, Anabaena sp. strain PCC 7120 (also known as Nostoc sp. strain PCC 7120) and Synechocystis sp. strain PCC 6803 deletion mutants lacking selected proposed carotenoid biosynthesis enzymes and GDP-fucose synthase (WcaG), which is required for myxol 2'-fucoside production, were analyzed. The carotenoids in these mutants were identified using high-performance liquid chromatography, field desorption mass spectrometry, and (1)H nuclear magnetic resonance. The wcaG (all4826) deletion mutant of Anabaena sp. strain PCC 7120 produced myxol 2'-rhamnoside and 4-ketomyxol 2'-rhamnoside as polar carotenoids instead of the myxol 2'-fucoside and 4-ketomyxol 2'-fucoside produced by the wild type. Deletion of the corresponding gene in Synechocystis sp. strain PCC 6803 (sll1213; 79% amino acid sequence identity with the Anabaena sp. strain PCC 7120 gene product) produced free myxol instead of the myxol 2'-dimethyl-fucoside produced by the wild type. Free myxol might correspond to the unknown component observed previously in the same mutant (H. E. Mohamed, A. M. L. van de Meene, R. W. Roberson, and W. F. J. Vermaas, J. Bacteriol. 187:6883-6892, 2005). These results indicate that in Anabaena sp. strain PCC 7120, but not in Synechocystis sp. strain PCC 6803, rhamnose can be substituted for fucose in myxol glycoside. The beta-carotene hydroxylase orthologue (CrtR, Alr4009) of Anabaena sp. strain PCC 7120 catalyzed the transformation of deoxymyxol and deoxymyxol 2'-fucoside to myxol and myxol 2'-fucoside, respectively, but not the beta-carotene-to-zeaxanthin reaction, whereas CrtR from Synechocystis sp. strain PCC 6803 catalyzed both reactions. Thus, the substrate specificities or substrate availabilities of both fucosyltransferase and CrtR were different in these species. The biosynthetic pathways of carotenoids in Anabaena sp. strain PCC 7120 are discussed.
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19
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Maresca JA, Graham JE, Bryant DA. The biochemical basis for structural diversity in the carotenoids of chlorophototrophic bacteria. PHOTOSYNTHESIS RESEARCH 2008; 97:121-40. [PMID: 18535920 DOI: 10.1007/s11120-008-9312-3] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2008] [Accepted: 05/14/2008] [Indexed: 05/15/2023]
Abstract
Ongoing work has led to the identification of most of the biochemical steps in carotenoid biosynthesis in chlorophototrophic bacteria. In carotenogenesis, a relatively small number of modifications leads to a great diversity of carotenoid structures. This review examines the individual steps in the pathway, discusses how each contributes to structural diversity among carotenoids, and summarizes recent progress in elucidating the biosynthetic pathways for carotenoids in chlorophototrophs.
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Affiliation(s)
- Julia A Maresca
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA
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20
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Maresca JA, Bryant DA. Two genes encoding new carotenoid-modifying enzymes in the green sulfur bacterium Chlorobium tepidum. J Bacteriol 2006; 188:6217-23. [PMID: 16923888 PMCID: PMC1595356 DOI: 10.1128/jb.00766-06] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The green sulfur bacterium Chlorobium tepidum produces chlorobactene as its primary carotenoid. Small amounts of chlorobactene are hydroxylated by the enzyme CrtC and then glucosylated and acylated to produce chlorobactene glucoside laurate. The genes encoding the enzymes responsible for these modifications of chlorobactene, CT1987, and CT0967, have been identified by comparative genomics, and these genes were insertionally inactivated in C. tepidum to verify their predicted function. The gene encoding chlorobactene glucosyltransferase (CT1987) has been named cruC, and the gene encoding chlorobactene lauroyltransferase (CT0967) has been named cruD. Homologs of these genes are found in the genomes of all sequenced green sulfur bacteria and filamentous anoxygenic phototrophs as well as in the genomes of several nonphotosynthetic bacteria that produce similarly modified carotenoids. The other bacteria in which these genes are found are not closely related to green sulfur bacteria or to one another. This suggests that the ability to synthesize modified carotenoids has been a frequently transferred trait.
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Affiliation(s)
- Julia A Maresca
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, S-235 Frear Building, PA 16802, USA
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Mohamed HE, Vermaas WFJ. Sll0254 (CrtL(diox)) is a bifunctional lycopene cyclase/dioxygenase in cyanobacteria producing myxoxanthophyll. J Bacteriol 2006; 188:3337-44. [PMID: 16621828 PMCID: PMC1447463 DOI: 10.1128/jb.188.9.3337-3344.2006] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Upon depletion of Sll0254 in Synechocystis sp. strain PCC 6803, cyclized carotenoids were replaced by linear, relatively hydrophilic carotenoids, and the amount of the two photosystems decreased greatly. Full segregants of the sll0254 deletion in Synechocystis were not obtained, implying that this gene is essential for survival, most likely to allow normal cell division. The N-terminal half of Sll0254 has limited similarity to the family of lycopene cyclases, has an additional dehydrogenase motif near the N terminus, and is followed by a Rieske 2Fe-2S center sequence signature. To test whether Sll0254 serves as a lycopene cyclase in Synechocystis, the corresponding gene was expressed in Escherichia coli strains that can produce lycopene or neurosporene. In the presence of Sll0254 these linear carotenoids were converted into cyclized, relatively hydrophilic pigments, with masses consistent with the introduction of two hydroxyl groups and with spectra indicative of only small changes in the number of conjugated double bonds. This suggests that Sll0254 catalyzes formation of oxygenated, cyclized carotenoids. We interpret the appearance of the hydroxyl groups in the carotenoids to be due to dioxygenase activity involving the Rieske 2Fe-2S center and the additional dehydrogenase domain. This dioxygenase activity is required in the myxoxanthophyll biosynthesis pathway, after or concomitant with cyclization on the other end of the molecule. We interpret Sll0254 to be a dual-function enzyme with both lycopene cyclase and dioxygenase activity and have named it CrtL(diox).
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Affiliation(s)
- Hatem E Mohamed
- School of Life Sciences, Arizona State University, P.O. Box 874501, Tempe, Arizona 85287-4501, USA
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Takaichi S, Mochimaru M, Maoka T. Presence of free myxol and 4-hydroxymyxol and absence of myxol glycosides in Anabaena variabilis ATCC 29413, and proposal of a biosynthetic pathway of carotenoids. PLANT & CELL PHYSIOLOGY 2006; 47:211-6. [PMID: 16338959 DOI: 10.1093/pcp/pci236] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
We identified the molecular structures of all carotenoids in Anabaena variabilis ATCC 29413 (= IAM M-204). The major carotenoids were beta-carotene, echinenone and canthaxanthin. Myxol glycosides were absent, while free forms of myxol and 4-hydroxymyxol were present. The 4-hydroxyl group of the latter was a mixture of (4R) and (4S) configurations, which is a rare mixture in carotenoids. Thus, this strain was the first cyanobacterium found to have free myxol and not myxol glycosides, and seemed to lack the gene for or activity of glycosyl transferase. In another strain of A. variabilis IAM M-3 (= PCC 7118), we recently identified (3R,2'S)-myxol 2'-fucoside and (3S,2'S)-4-ketomyxol 2'-fucoside, and hence the strain ATCC 29413 might be useful for investigating the characteristics of myxol glycosides in cyanobacteria. Based on the identification of the carotenoids and the completion of the entire nucleotide sequence of the genome in A. variabilis ATCC 29413, we proposed a biosynthetic pathway of the carotenoids and the corresponding genes and enzymes. The homologous genes were searched by sequence homology only from the functionally confirmed genes.
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Affiliation(s)
- Shinichi Takaichi
- Biological Laboratory, Nippon Medical School, Kawasaki, 211-0063 Japan.
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Dembitsky VM. Astonishing diversity of natural surfactants: 3. Carotenoid glycosides and isoprenoid glycolipids. Lipids 2005; 40:535-57. [PMID: 16149733 DOI: 10.1007/s11745-005-1415-z] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Carotenoid glycosides and isoprenoid glycolipids are of great interest, especially for the medicinal, pharmaceutical, food, cosmetic, flavor, and fragrance industries. These biologically active natural surfactants have good prospects for the future chemical preparation of compounds useful as antimicrobial, antibacterial, and antitumor agents, or in industry. More than 300 unusual natural surfactants are described in this review article, including their chemical structures and biological activities.
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Affiliation(s)
- Valery M Dembitsky
- Department of Organic Chemistry and School of Pharmacy, Hebrew University, Jerusalem, Israel.
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Mohamed HE, van de Meene AML, Roberson RW, Vermaas WFJ. Myxoxanthophyll is required for normal cell wall structure and thylakoid organization in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol 2005; 187:6883-92. [PMID: 16199557 PMCID: PMC1251633 DOI: 10.1128/jb.187.20.6883-6892.2005] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Myxoxanthophyll is a carotenoid glycoside in cyanobacteria that is of unknown biological significance. The sugar moiety of myxoxanthophyll in Synechocystis sp. strain PCC 6803 was identified as dimethyl fucose. The open reading frame sll1213 encoding a fucose synthetase orthologue was deleted to probe the role of fucose and to determine the biological significance of myxoxanthophyll in Synechocystis sp. strain PCC 6803. Upon deletion of sll1213, a pleiotropic phenotype was obtained: when propagated at 0.5 micromol photons m(-2) s(-1), photomixotrophic growth of cells lacking sll1213 was poor. When grown at 40 micromol photons m(-2) s(-1), growth was comparable to that of the wild type, but cells showed a severe reduction in or loss of the glycocalyx (S-layer). As a consequence, cells aggregated in liquid as well as on plates. At both light intensities, new carotenoid glycosides accumulated, but myxoxanthophyll was absent. New carotenoid glycosides may be a consequence of less-specific glycosylation reactions that gained prominence upon the disappearance of the native sugar moiety (fucose) of myxoxanthophyll. In the mutant, the N-storage compound cyanophycin accumulated, and the organization of thylakoid membranes was altered. Altered cell wall structure and thylakoid membrane organization and increased cyanophycin accumulation were also observed for deltaslr0940K, a strain lacking zeta-carotene desaturase and thereby all carotenoids but retaining fucose. Therefore, lack of myxoxanthophyll and not simply of fucose results in most of the phenotypic effects described here. It is concluded that myxoxanthophyll contributes significantly to the vigor of cyanobacteria, as it stabilizes thylakoid membranes and is critical for S-layer formation.
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Affiliation(s)
- Hatem E Mohamed
- School of Life Sciences, Arizona State University, P.O. Box 874501, Tempe, AZ 85287-4501, USA
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Maeda H, Sakuragi Y, Bryant DA, Dellapenna D. Tocopherols protect Synechocystis sp. strain PCC 6803 from lipid peroxidation. PLANT PHYSIOLOGY 2005; 138:1422-35. [PMID: 15965015 PMCID: PMC1176414 DOI: 10.1104/pp.105.061135] [Citation(s) in RCA: 102] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Tocopherols (vitamin E) are lipid-soluble antioxidants synthesized only by photosynthetic eukaryotes and some cyanobacteria, and have been assumed to play important roles in protecting photosynthetic membranes from oxidative stress. To test this hypothesis, tocopherol-deficient mutants of Synechocystis sp. strain PCC 6803 (slr1736 and slr1737 mutants) were challenged with a series of reactive oxygen species-generating and lipid peroxidation-inducing chemicals in combination with high-light (HL) intensity stress. The tocopherol-deficient mutants and wild type were indistinguishable in their growth responses to HL in the presence and absence of superoxide and singlet oxygen-generating chemicals. However, the mutants showed enhanced sensitivity to linoleic or linolenic acid treatments in combination with HL, consistent with tocopherols playing a crucial role in protecting Synechocystis sp. strain PCC 6803 cells from lipid peroxidation. The tocopherol-deficient mutants were also more susceptible to HL treatment in the presence of sublethal levels of norflurazon, an inhibitor of carotenoid synthesis, suggesting carotenoids and tocopherols functionally interact or have complementary or overlapping roles in protecting Synechocystis sp. strain PCC 6803 from lipid peroxidation and HL stress.
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Affiliation(s)
- Hiroshi Maeda
- Department of Biochemistry and Molecular Biology , Michigan State University, East Lansing, Michigan 48824, USA
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Tsuchiya T, Takaichi S, Misawa N, Maoka T, Miyashita H, Mimuro M. The cyanobacteriumGloeobacter violaceusPCC 7421 uses bacterial-type phytoene desaturase in carotenoid biosynthesis. FEBS Lett 2005; 579:2125-9. [PMID: 15811329 DOI: 10.1016/j.febslet.2005.02.066] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2005] [Revised: 02/27/2005] [Accepted: 02/28/2005] [Indexed: 11/18/2022]
Abstract
Carotenoid composition and its biosynthetic pathway in the cyanobacterium Gloeobacter violaceus PCC 7421 were investigated. beta-Carotene and (2S,2'S)-oscillol 2,2'-di(alpha-L-fucoside), and echinenone were major and minor carotenoids, respectively. We identified two unique genes for carotenoid biosynthesis using in vivo functional complementation experiments. In Gloeobacter, a bacterial-type phytoene desaturase (CrtI), rather than plant-type desaturases (CrtP and CrtQ), produced lycopene. This is the first demonstration of an oxygenic photosynthetic organism utilizing bacterial-type phytoene desaturase. We also revealed that echinenone synthesis is catalyzed by CrtW rather than CrtO. These findings indicated that Gloeobacter retains ancestral properties of carotenoid biosynthesis.
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Affiliation(s)
- Tohru Tsuchiya
- Department of Technology and Ecology, Hall of Global Environmental Research, Kyoto University, Kyoto 606-8501, Japan
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Takaichi S, Mochimaru M, Maoka T, Katoh H. Myxol and 4-Ketomyxol 2′-Fucosides, not Rhamnosides, from Anabaena sp. PCC 7120 and Nostoc punctiforme PCC 73102, and Proposal for the Biosynthetic Pathway of Carotenoids. ACTA ACUST UNITED AC 2005; 46:497-504. [PMID: 15695449 DOI: 10.1093/pcp/pci049] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
We identified the molecular structures of carotenoids in some Anabaena and Nostoc species. The myxoxanthophyll and ketomyxoxanthophyll in Anabaena (also known as Nostoc) sp. PCC 7120, Anabaena variabilis IAM M-3, Nostoc punctiforme PCC 73102 and Nostoc sp. HK-01 were (3R,2'S)-myxol 2'-fucoside and (3S,2'S)-4-ketomyxol 2'-fucoside, respectively. The glycoside moiety of the pigments was fucose, not rhamnose. The major carotenoids were beta-carotene and echinenone, and the minor ones were beta-cryptoxanthin, zeaxanthin, canthaxanthin and 3'-hydroxyechinenone. Based on the identification of the carotenoids and the completion of the entire nucleotide sequence of the genome in Anabaena sp. PCC 7120 and N. punctiforme PCC 73102, we proposed a biosynthetic pathway for the carotenoids and the corresponding genes and enzymes. Since only zeta-carotene desaturase (CrtQ) from Anabaena sp. PCC 7120 and beta-carotene ketolase (CrtW) from N. punctiforme PCC 73102 have been functionally identified, the other genes were searched by sequence homology only from the functionally confirmed genes. Finally, we investigated the phylogenetic relationships among some Anabaena and Nostoc species, including some newly isolated species.
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Affiliation(s)
- Shinichi Takaichi
- Biological Laboratory, Nippon Medical School, Kawasaki, 211-0063 Japan.
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