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Forte NR, Veasey VN, Christie BJ, Carter A, Hanks MA, Holderfield A, Houston T, Challa AK, Turner AN. Engaging students in a genetics course-based undergraduate research experience utilizing Caenorhabditis elegans in hybrid learning to explore human disease gene variants. JOURNAL OF MICROBIOLOGY & BIOLOGY EDUCATION 2023; 24:e00078-23. [PMID: 38108007 PMCID: PMC10720527 DOI: 10.1128/jmbe.00078-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 10/13/2023] [Indexed: 12/19/2023]
Abstract
Genetic analysis in model systems using bioinformatic approaches provides a rich context for a concrete and conceptual understanding of gene structure and function. With the intent to engage students in research and explore disease biology utilizing the nematode Caenorhabditis elegans model, we developed a semester-long course-based undergraduate research experience (CURE) in a hybrid (online/in-person) learning environment-the gene-editing and evolutionary nematode exploration CURE (GENE-CURE). Using a combination of bioinformatic and molecular genetic tools, students performed structure-function analysis of disease-associated variants of uncertain significance (VUS) in human orthologs. With the aid of a series of workshop-style research sessions, students worked in teams of two to six members to identify a conserved VUS locus across species and design and test a polymerase chain reaction-based assay for targeted editing of a gene in the nematode and downstream genotyping. Research session discussions, responsible conduct of research training, electronic laboratory notebook, project reports, quizzes, and group poster presentations at a research symposium were assessed for mastery of learning objectives and research progress. Self-reflections were collected from students to assess engagement, science identity, and science efficacy. Qualitative analysis of these reflections indicated several gains suggesting that all students found many aspects of the GENE-CURE rewarding (learning process of research, self-confidence in research and science identity, and personal interest) and challenging (iterative research and failure, time management, COVID-19 pandemic, and life issues).
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Affiliation(s)
- Natalie R. Forte
- Department of Biology, Jacksonville State University, Jacksonville, Alabama, USA
| | - Virginia N. Veasey
- Department of Biology, Jacksonville State University, Jacksonville, Alabama, USA
| | - Bethany J. Christie
- Department of Psychology, Jacksonville State University, Jacksonville, Alabama, USA
| | - Amira Carter
- Department of Biology, Jacksonville State University, Jacksonville, Alabama, USA
| | - Marli A. Hanks
- Department of Secondary Education, Jacksonville State University, Jacksonville, Alabama, USA
| | - Alan Holderfield
- Department of Secondary Education, Jacksonville State University, Jacksonville, Alabama, USA
| | - Taylor Houston
- Department of Secondary Education, Jacksonville State University, Jacksonville, Alabama, USA
| | - Anil K. Challa
- Department of Biology, University of Alabama at Birmingham, Birmingham, Alabama, USA
- Department of Life Sciences, Shiv Nadar University, Delhi, National Capital Region, India
| | - Ashley N. Turner
- Department of Biology, Jacksonville State University, Jacksonville, Alabama, USA
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Laws KM, Natale E, Waddell EA, Shuda JR, Bashaw GJ. DrosoPHILA: A Partnership between Scientists and Teachers That Begins in the Lab and Continues into City Schools. eNeuro 2023; 10:ENEURO.0263-22.2022. [PMID: 36746638 PMCID: PMC9927510 DOI: 10.1523/eneuro.0263-22.2022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 12/09/2022] [Accepted: 12/13/2022] [Indexed: 02/08/2023] Open
Abstract
Here, we describe the development, structure, and effectiveness of an outreach program, DrosoPHILA, that leverages the tools of our fly neurodevelopmental research program at the University of Pennsylvania to reinforce the biology curriculum in local public schools. DrosoPHILA was developed and is sustained by a continued collaboration between members of the Bashaw lab, experienced outreach educators, and teachers in the School District of Philadelphia. Since the program's inception, we have collaborated with 18 teachers and over 2400 students. Student outcome data indicates significant positive attitude shifts around science identity and grade-appropriate knowledge gains.
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Affiliation(s)
- Kaitlin M Laws
- Department of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadlephia, PA 19104
| | - Ent Natale
- Institute for Regenerative Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104
| | - Edward A Waddell
- Department of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadlephia, PA 19104
| | - Jamie R Shuda
- Institute for Regenerative Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104
| | - Greg J Bashaw
- Department of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadlephia, PA 19104
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Ruiz-Whalen DM, O'Reilly AM. Science from the soul: original research by middle and high school students addresses community health needs and increases representation in science. Genetics 2022; 222:iyac156. [PMID: 39255402 PMCID: PMC9713453 DOI: 10.1093/genetics/iyac156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/12/2024] Open
Affiliation(s)
- Dara M Ruiz-Whalen
- Immersion Science Program, Fox Chase Cancer Center, Philadelphia, PA, USA
- eCLOSE Institute, Huntingdon Valley, PA, USA
| | - Alana M O'Reilly
- Immersion Science Program, Fox Chase Cancer Center, Philadelphia, PA, USA
- eCLOSE Institute, Huntingdon Valley, PA, USA
- Molecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, USA
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