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Li J, Gong W, Mao L, Pan X, Wu Q, Guo Y, Jiang J, Tang H, Zhao Y, Cheng L, Tu C, Yu X, He S, Zhang W. Molecular epizootiology of porcine reproductive and respiratory syndrome virus in the Xinjiang Uygur Autonomous Region of China. Front Microbiol 2024; 15:1419499. [PMID: 38989028 PMCID: PMC11233727 DOI: 10.3389/fmicb.2024.1419499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Accepted: 06/11/2024] [Indexed: 07/12/2024] Open
Abstract
Rapid evolution of porcine reproductive and respiratory syndrome virus (PRRSV) is the bottleneck for effective prevention and control of PRRS. Thus, understanding the prevalence and genetic background of PRRSV strains in swine-producing regions is important for disease prevention and control. However, there is only limited information about the epizootiological situation of PRRS in the Xinjiang Uygur Autonomous Region, China. In this study, blood or lung tissue samples were collected from 1,411 PRRS-suspected weaned pigs from 9 pig farms in Changji, Shihezi, and Wujiaqu cities between 2020 and 2022. The samples were first tested by RT-quantitative PCR, yielding a PRRSV-2 positive rate of 53.6%. Subsequently, 36 PRRSV strains were isolated through initial adaptation in bone marrow-derived macrophages followed by propagation in grivet monkey Marc-145 cells. Furthermore, 28 PRRSV-positive samples and 20 cell-adapted viruses were selected for high-throughput sequencing (HTS) to obtain the entire PRRSV genome sequences. Phylogenetic analysis based on the nucleotide sequences of the ORF5 gene of the PRRSV strains identified in this study grouped into sub-lineages 1.8 and 8.7 the former being the dominant strain currently circulating in Xinjiang. However, the NSP2 proteins of the Xinjiang PRRSV strains shared the same deletion patterns as sub-lineage 1.8 prototype strain NADC30 with the exception of 4 strains carrying 2-3 additional amino acid deletions. Further analysis confirmed that recombination events had occurred in 27 of 37 PRRSVs obtained here with the parental strains belonging to sub-lineages 1.8 and 8.7, lineages 3 and 5, with the recombination events having occurred most frequently in the 5' and 3' termini of ORF1a and 5' terminus of ORF1b.
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Affiliation(s)
- Junhui Li
- College of Veterinary Medicine, Hunan Agricultural University, Changsha, China
- Tecon Bio-Pharmaceuticals Co. Ltd., Urumqi, China
| | - Wenjie Gong
- College of Veterinary Medicine, Jilin University, Changchun, China
| | - Liping Mao
- Tecon Bio-Pharmaceuticals Co. Ltd., Urumqi, China
| | - Xiaomei Pan
- Tecon Bio-Pharmaceuticals Co. Ltd., Urumqi, China
| | - Qingqing Wu
- College of Veterinary Medicine, Jilin University, Changchun, China
- Changchun Research Veterinary Institute, Chinese Academy of Agricultural Sciences, Changchun, China
| | - Yidi Guo
- College of Veterinary Medicine, Jilin University, Changchun, China
| | - Jianfeng Jiang
- College of Veterinary Medicine, Jilin University, Changchun, China
- Changchun Research Veterinary Institute, Chinese Academy of Agricultural Sciences, Changchun, China
| | - Huifen Tang
- Tecon Bio-Pharmaceuticals Co. Ltd., Urumqi, China
| | - Yi Zhao
- Tecon Bio-Pharmaceuticals Co. Ltd., Urumqi, China
| | | | - Changchun Tu
- Changchun Research Veterinary Institute, Chinese Academy of Agricultural Sciences, Changchun, China
- Jiangsu Co-Innovation Center for the Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, China
| | - Xinglong Yu
- College of Veterinary Medicine, Hunan Agricultural University, Changsha, China
| | - Sun He
- Tecon Bio-Pharmaceuticals Co. Ltd., Urumqi, China
| | - Wei Zhang
- Tecon Bio-Pharmaceuticals Co. Ltd., Urumqi, China
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Wang T, Du H, Feng N, Liu Y, Xu Y, Sun H, Peng P, Qin S, Zhang X, Liu Y, Yu M, Liang H, He B, Zhu G, Tu C, Tu Z. First complete genomic sequence analysis of canine distemper virus in wild boar. Virol Sin 2024:S1995-820X(24)00072-5. [PMID: 38768711 DOI: 10.1016/j.virs.2024.05.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Accepted: 03/29/2024] [Indexed: 05/22/2024] Open
Affiliation(s)
- Tong Wang
- Jiangsu Co-Innovation Center for the Prevention and Control of Important Animal Infectious Disease and Zoonoses, Yangzhou University, Yangzhou 225009, China; Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun 130122, China
| | - Haiying Du
- Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun 130122, China
| | - Na Feng
- Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun 130122, China
| | - Yuhang Liu
- Jiangsu Co-Innovation Center for the Prevention and Control of Important Animal Infectious Disease and Zoonoses, Yangzhou University, Yangzhou 225009, China; Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun 130122, China
| | - Yu Xu
- Biological Disaster Control and Prevention Center, National Forestry and Grassland Administration, Shenyang 110034, China
| | - Heting Sun
- Biological Disaster Control and Prevention Center, National Forestry and Grassland Administration, Shenyang 110034, China
| | - Peng Peng
- Biological Disaster Control and Prevention Center, National Forestry and Grassland Administration, Shenyang 110034, China
| | - Siyuan Qin
- Biological Disaster Control and Prevention Center, National Forestry and Grassland Administration, Shenyang 110034, China
| | - Xiaotian Zhang
- Biological Disaster Control and Prevention Center, National Forestry and Grassland Administration, Shenyang 110034, China
| | - Yan Liu
- Biological Disaster Control and Prevention Center, National Forestry and Grassland Administration, Shenyang 110034, China
| | - Mingyuan Yu
- Biological Disaster Control and Prevention Center, National Forestry and Grassland Administration, Shenyang 110034, China
| | - Hongrui Liang
- Biological Disaster Control and Prevention Center, National Forestry and Grassland Administration, Shenyang 110034, China
| | - Biao He
- Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun 130122, China
| | - Guoqiang Zhu
- Jiangsu Co-Innovation Center for the Prevention and Control of Important Animal Infectious Disease and Zoonoses, Yangzhou University, Yangzhou 225009, China.
| | - Changchun Tu
- Jiangsu Co-Innovation Center for the Prevention and Control of Important Animal Infectious Disease and Zoonoses, Yangzhou University, Yangzhou 225009, China; Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun 130122, China.
| | - Zhongzhong Tu
- Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun 130122, China.
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Li Q, Wang Z, Jiang J, He B, He S, Tu C, Guo Y, Gong W. Outbreak of piglet diarrhea associated with a new reassortant porcine rotavirus B. Vet Microbiol 2024; 288:109947. [PMID: 38101077 DOI: 10.1016/j.vetmic.2023.109947] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 12/07/2023] [Accepted: 12/10/2023] [Indexed: 12/17/2023]
Abstract
Rotavirus B (RVB) is a causative agent leading to acute viral gastroenteritis diarrhea in both children and young animals, and has been commonly detected in piglets. In order to determine the causative agent of diarrheal outbreak occurring in December 2022 in piglets from a pig herd in Luoyang, Henan province of China, four common viral pathogens causing piglet diarrhea-three coronaviruses and rotavirus A (RVA) were first tested and found negative, therefore metagenomic sequencing was performed to explore other potential pathogens in the diarrheal samples. Unexpectedly, the most abundant viral reads mapped to RVB, and were de novo assembled to complete 11 viral gene segments. Sequence comparisons revealed that 5 gene segments encoding VP1, VP2, VP3, NSP3 and NSP4 of RVB strain designated as HNLY-2022 are most closely related to RVB strains derived from herbivores with low nucleotide similarities of 65.7-75.3%, and the remaining segments were relatively close to porcine RVB strains with the VP4 gene segment showing very low nucleotide identity (65.0%) with reference strains, indicating HNLY-2022 is a new reassortant RVB strain. Based on the previously proposed genotype classification criterion, the genotype constellation of RVB strain HNLY-2022 is G6-P[6]-I4-R6-C6-M6-A7-N5-T7-E5-H4 with more than half of the genotypes (P[6], R6, C6, M6, T7 and E5) newly reported. Therefore, the new reassortant RVB strain is the likely causative agent for the diarrheal outbreak of piglets occurred in China and more epidemiological studies should be conducted to monitor the spread of this newly identified porcine RVB strain.
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Affiliation(s)
- Qingxian Li
- State Key Laboratory for Diagnosis and Treatment of Severe Zoonotic Infectious Diseases, Key Laboratory for Zoonosis Research of the Ministry of Education, College of Veterinary Medicine, Jilin University, Changchun 130062, China; Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun 130122, China
| | - Zunbao Wang
- State Key Laboratory for Diagnosis and Treatment of Severe Zoonotic Infectious Diseases, Key Laboratory for Zoonosis Research of the Ministry of Education, College of Veterinary Medicine, Jilin University, Changchun 130062, China
| | - Jianfeng Jiang
- State Key Laboratory for Diagnosis and Treatment of Severe Zoonotic Infectious Diseases, Key Laboratory for Zoonosis Research of the Ministry of Education, College of Veterinary Medicine, Jilin University, Changchun 130062, China; Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun 130122, China
| | - Biao He
- Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun 130122, China
| | - Sun He
- TECON Biopharmaceutical Co., Ltd., Urumqi 830000, China
| | - Changchun Tu
- Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun 130122, China; Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou 225009, China
| | - Yidi Guo
- State Key Laboratory for Diagnosis and Treatment of Severe Zoonotic Infectious Diseases, Key Laboratory for Zoonosis Research of the Ministry of Education, College of Veterinary Medicine, Jilin University, Changchun 130062, China.
| | - Wenjie Gong
- State Key Laboratory for Diagnosis and Treatment of Severe Zoonotic Infectious Diseases, Key Laboratory for Zoonosis Research of the Ministry of Education, College of Veterinary Medicine, Jilin University, Changchun 130062, China.
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