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For: Ranjith-Kumar CT, Zhang X, Kao CC. Enhancer-like activity of a brome mosaic virus RNA promoter. J Virol 2003;77:1830-9. [PMID: 12525617 PMCID: PMC140991 DOI: 10.1128/jvi.77.3.1830-1839.2003] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
Number Cited by Other Article(s)
1
Sztuba-Solińska J, Stollar V, Bujarski JJ. Subgenomic messenger RNAs: mastering regulation of (+)-strand RNA virus life cycle. Virology 2011;412:245-55. [PMID: 21377709 PMCID: PMC7111999 DOI: 10.1016/j.virol.2011.02.007] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2010] [Revised: 12/14/2010] [Accepted: 02/04/2011] [Indexed: 12/12/2022]
2
Li Z, Nagy PD. Diverse roles of host RNA binding proteins in RNA virus replication. RNA Biol 2011;8:305-15. [PMID: 21505273 PMCID: PMC3230553 DOI: 10.4161/rna.8.2.15391] [Citation(s) in RCA: 123] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]  Open
3
Villordo SM, Alvarez DE, Gamarnik AV. A balance between circular and linear forms of the dengue virus genome is crucial for viral replication. RNA (NEW YORK, N.Y.) 2010;16:2325-2335. [PMID: 20980673 PMCID: PMC2995394 DOI: 10.1261/rna.2120410] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2010] [Accepted: 09/08/2010] [Indexed: 05/30/2023]
4
Jiang Y, Cheng CP, Serviene E, Shapka N, Nagy PD. Repair of lost 5' terminal sequences in tombusviruses: Rapid recovery of promoter- and enhancer-like sequences in recombinant RNAs. Virology 2010;404:96-105. [PMID: 20537671 DOI: 10.1016/j.virol.2010.04.025] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2009] [Revised: 04/16/2010] [Accepted: 04/23/2010] [Indexed: 11/29/2022]
5
Yi G, Vaughan RC, Yarbrough I, Dharmaiah S, Kao CC. RNA binding by the brome mosaic virus capsid protein and the regulation of viral RNA accumulation. J Mol Biol 2009;391:314-26. [PMID: 19481091 PMCID: PMC2774812 DOI: 10.1016/j.jmb.2009.05.065] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2009] [Revised: 05/12/2009] [Accepted: 05/20/2009] [Indexed: 12/20/2022]
6
Hu B, Pillai-Nair N, Hemenway C. Long-distance RNA-RNA interactions between terminal elements and the same subset of internal elements on the potato virus X genome mediate minus- and plus-strand RNA synthesis. RNA (NEW YORK, N.Y.) 2007;13:267-80. [PMID: 17185361 PMCID: PMC1781375 DOI: 10.1261/rna.243607] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
7
Panavas T, Stork J, Nagy PD. Use of double-stranded RNA templates by the tombusvirus replicase in vitro: Implications for the mechanism of plus-strand initiation. Virology 2006;352:110-20. [PMID: 16765402 DOI: 10.1016/j.virol.2006.04.033] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2005] [Revised: 04/26/2006] [Accepted: 04/26/2006] [Indexed: 10/24/2022]
8
Filomatori CV, Lodeiro MF, Alvarez DE, Samsa MM, Pietrasanta L, Gamarnik AV. A 5' RNA element promotes dengue virus RNA synthesis on a circular genome. Genes Dev 2006;20:2238-49. [PMID: 16882970 PMCID: PMC1553207 DOI: 10.1101/gad.1444206] [Citation(s) in RCA: 284] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
9
Cheng CP, Panavas T, Luo G, Nagy PD. Heterologous RNA replication enhancer stimulates in vitro RNA synthesis and template-switching by the carmovirus, but not by the tombusvirus, RNA-dependent RNA polymerase: implication for modular evolution of RNA viruses. Virology 2005;341:107-21. [PMID: 16083933 DOI: 10.1016/j.virol.2005.06.042] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2005] [Revised: 05/24/2005] [Accepted: 06/29/2005] [Indexed: 11/24/2022]
10
Panavas T, Nagy PD. Mechanism of stimulation of plus-strand synthesis by an RNA replication enhancer in a tombusvirus. J Virol 2005;79:9777-85. [PMID: 16014939 PMCID: PMC1181556 DOI: 10.1128/jvi.79.15.9777-9785.2005] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2005] [Accepted: 04/09/2005] [Indexed: 01/18/2023]  Open
11
Grdzelishvili VZ, Garcia-Ruiz H, Watanabe T, Ahlquist P. Mutual interference between genomic RNA replication and subgenomic mRNA transcription in brome mosaic virus. J Virol 2005;79:1438-51. [PMID: 15650170 PMCID: PMC544081 DOI: 10.1128/jvi.79.3.1438-1451.2005] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]  Open
12
Sun X, Zhang G, Simon AE. Short internal sequences involved in replication and virion accumulation in a subviral RNA of turnip crinkle virus. J Virol 2005;79:512-24. [PMID: 15596844 PMCID: PMC538713 DOI: 10.1128/jvi.79.1.512-524.2005] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
13
Bhardwaj K, Guarino L, Kao CC. The severe acute respiratory syndrome coronavirus Nsp15 protein is an endoribonuclease that prefers manganese as a cofactor. J Virol 2004;78:12218-24. [PMID: 15507608 PMCID: PMC525082 DOI: 10.1128/jvi.78.22.12218-12224.2004] [Citation(s) in RCA: 146] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
14
Lee H, Shin H, Wimmer E, Paul AV. cis-acting RNA signals in the NS5B C-terminal coding sequence of the hepatitis C virus genome. J Virol 2004;78:10865-77. [PMID: 15452207 PMCID: PMC521798 DOI: 10.1128/jvi.78.20.10865-10877.2004] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
15
Wierzchoslawski R, Dzianott A, Bujarski J. Dissecting the requirement for subgenomic promoter sequences by RNA recombination of brome mosaic virus in vivo: evidence for functional separation of transcription and recombination. J Virol 2004;78:8552-64. [PMID: 15280464 PMCID: PMC479100 DOI: 10.1128/jvi.78.16.8552-8564.2004] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
16
Zhang G, Zhang J, Simon AE. Repression and derepression of minus-strand synthesis in a plus-strand RNA virus replicon. J Virol 2004;78:7619-33. [PMID: 15220437 PMCID: PMC434078 DOI: 10.1128/jvi.78.14.7619-7633.2004] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
17
Sivakumaran K, Choi SK, Hema M, Kao CC. Requirements for brome mosaic virus subgenomic RNA synthesis in vivo and replicase-core promoter interactions in vitro. J Virol 2004;78:6091-101. [PMID: 15163702 PMCID: PMC416551 DOI: 10.1128/jvi.78.12.6091-6101.2004] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
18
van Dijk AA, Makeyev EV, Bamford DH. Initiation of viral RNA-dependent RNA polymerization. J Gen Virol 2004;85:1077-1093. [PMID: 15105525 DOI: 10.1099/vir.0.19731-0] [Citation(s) in RCA: 125] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
19
Pogany J, Fabian MR, White KA, Nagy PD. A replication silencer element in a plus-strand RNA virus. EMBO J 2003;22:5602-11. [PMID: 14532132 PMCID: PMC213777 DOI: 10.1093/emboj/cdg523] [Citation(s) in RCA: 111] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2003] [Revised: 08/18/2003] [Accepted: 08/19/2003] [Indexed: 01/18/2023]  Open
20
Sun X, Simon AE. Fitness of a turnip crinkle virus satellite RNA correlates with a sequence-nonspecific hairpin and flanking sequences that enhance replication and repress the accumulation of virions. J Virol 2003;77:7880-9. [PMID: 12829828 PMCID: PMC161943 DOI: 10.1128/jvi.77.14.7880-7889.2003] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
21
Wierzchoslawski R, Dzianott A, Kunimalayan S, Bujarski JJ. A transcriptionally active subgenomic promoter supports homologous crossovers in a plus-strand RNA virus. J Virol 2003;77:6769-76. [PMID: 12767997 PMCID: PMC156210 DOI: 10.1128/jvi.77.12.6769-6776.2003] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
22
Sivakumaran K, Hema M, Kao CC. Brome mosaic virus RNA syntheses in vitro and in barley protoplasts. J Virol 2003;77:5703-11. [PMID: 12719563 PMCID: PMC153998 DOI: 10.1128/jvi.77.10.5703-5711.2003] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]  Open
23
Zhang X, Kim CH, Sivakumaran K, Kao C. Stable RNA structures can repress RNA synthesis in vitro by the brome mosaic virus replicase. RNA (NEW YORK, N.Y.) 2003;9:555-565. [PMID: 12702814 PMCID: PMC1370421 DOI: 10.1261/rna.2190803] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2002] [Accepted: 02/11/2003] [Indexed: 05/24/2023]
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