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Petek-Seoane NA, Rodriguez J, Derman AI, Royal SG, Lord SJ, Lawrence R, Pogliano J, Mullins RD. Polymer dynamics of Alp7A reveals how two critical concentrations govern assembly of dynamically unstable actin-like proteins. Mol Biol Cell 2024; 35:ar145. [PMID: 39320937 DOI: 10.1091/mbc.e23-11-0440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/26/2024] Open
Abstract
Dynamically unstable polymers capture and move cellular cargos in bacteria and eukaryotes, but regulation of their assembly remains poorly understood. Here we describe polymerization of Alp7A, a bacterial actin-like protein (ALP) that distributes copies of plasmid pLS20 among daughter cells in Bacillus subtilis. Purified ATP-Alp7A forms dynamically unstable polymers with a high critical concentration for net assembly (ccN = 10.3 µM), but a much lower critical concentration for filament elongation (ccE = 0.6 µM). Rapid nucleation and stabilization of Alp7A polymers by the accessory factor, Alp7R, decrease ccN into the physiological range. Stable populations of Alp7A filaments appear under two conditions: (i) when Alp7R slows catastrophe rates or (ii) when Alp7A concentrations are high enough to promote filament bundling. These results reveal how dynamic instability maintains high steady-state concentrations of monomeric Alp7A, and how accessory factors regulate Alp7A assembly by modulating ccN independently of ccE.
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Affiliation(s)
| | - Johnny Rodriguez
- Department of Cellular and Molecular Pharmacology, UCSF, San Francisco 94158, CA
| | - Alan I Derman
- Department of Molecular Biology, UCSD, San Diego 92037, CA
| | | | - Samuel J Lord
- Department of Cellular and Molecular Pharmacology, UCSF, San Francisco 94158, CA
| | - Rosalie Lawrence
- Department of Cellular and Molecular Pharmacology, UCSF, San Francisco 94158, CA
| | - Joe Pogliano
- Department of Molecular Biology, UCSD, San Diego 92037, CA
| | - R Dyche Mullins
- Department of Cellular and Molecular Pharmacology, UCSF, San Francisco 94158, CA
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Velle KB, Swafford AJM, Garner E, Fritz-Laylin LK. Actin network evolution as a key driver of eukaryotic diversification. J Cell Sci 2024; 137:jcs261660. [PMID: 39120594 DOI: 10.1242/jcs.261660] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/10/2024] Open
Abstract
Eukaryotic cells have been evolving for billions of years, giving rise to wildly diverse cell forms and functions. Despite their variability, all eukaryotic cells share key hallmarks, including membrane-bound organelles, heavily regulated cytoskeletal networks and complex signaling cascades. Because the actin cytoskeleton interfaces with each of these features, understanding how it evolved and diversified across eukaryotic phyla is essential to understanding the evolution and diversification of eukaryotic cells themselves. Here, we discuss what we know about the origin and diversity of actin networks in terms of their compositions, structures and regulation, and how actin evolution contributes to the diversity of eukaryotic form and function.
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Affiliation(s)
- Katrina B Velle
- Department of Biology, University of Massachusetts Dartmouth, Dartmouth, MA 02747, USA
| | | | - Ethan Garner
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA
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Charles-Orszag A, Petek-Seoane NA, Mullins RD. Archaeal actins and the origin of a multi-functional cytoskeleton. J Bacteriol 2024; 206:e0034823. [PMID: 38391233 PMCID: PMC10955848 DOI: 10.1128/jb.00348-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2024] Open
Abstract
Actin and actin-like proteins form filamentous polymers that carry out important cellular functions in all domains of life. In this review, we sketch a map of the function and regulation of actin-like proteins across bacteria, archaea, and eukarya, marking some of the terra incognita that remain in this landscape. We focus particular attention on archaea because mapping the structure and function of cytoskeletal systems across this domain promises to help us understand the evolutionary relationship between the (mostly) mono-functional actin-like filaments found in bacteria and the multi-functional actin cytoskeletons that characterize eukaryotic cells.
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Affiliation(s)
- Arthur Charles-Orszag
- Department of Cellular and Molecular Pharmacology, Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, California, USA
| | - Natalie A. Petek-Seoane
- Department of Cellular and Molecular Pharmacology, Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, California, USA
| | - R. Dyche Mullins
- Department of Cellular and Molecular Pharmacology, Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, California, USA
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Schiller H, Hong Y, Kouassi J, Rados T, Kwak J, DiLucido A, Safer D, Marchfelder A, Pfeiffer F, Bisson A, Schulze S, Pohlschroder M. Identification of structural and regulatory cell-shape determinants in Haloferax volcanii. Nat Commun 2024; 15:1414. [PMID: 38360755 PMCID: PMC10869688 DOI: 10.1038/s41467-024-45196-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 01/16/2024] [Indexed: 02/17/2024] Open
Abstract
Archaea play indispensable roles in global biogeochemical cycles, yet many crucial cellular processes, including cell-shape determination, are poorly understood. Haloferax volcanii, a model haloarchaeon, forms rods and disks, depending on growth conditions. Here, we used a combination of iterative proteomics, genetics, and live-cell imaging to identify mutants that only form rods or disks. We compared the proteomes of the mutants with wild-type cells across growth phases, thereby distinguishing between protein abundance changes specific to cell shape and those related to growth phases. The results identified a diverse set of proteins, including predicted transporters, transducers, signaling components, and transcriptional regulators, as important for cell-shape determination. Through phenotypic characterization of deletion strains, we established that rod-determining factor A (RdfA) and disk-determining factor A (DdfA) are required for the formation of rods and disks, respectively. We also identified structural proteins, including an actin homolog that plays a role in disk-shape morphogenesis, which we named volactin. Using live-cell imaging, we determined volactin's cellular localization and showed its dynamic polymerization and depolymerization. Our results provide insights into archaeal cell-shape determination, with possible implications for understanding the evolution of cell morphology regulation across domains.
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Affiliation(s)
- Heather Schiller
- University of Pennsylvania, Department of Biology, Philadelphia, PA, 19104, USA
| | - Yirui Hong
- University of Pennsylvania, Department of Biology, Philadelphia, PA, 19104, USA
| | - Joshua Kouassi
- University of Pennsylvania, Department of Biology, Philadelphia, PA, 19104, USA
| | - Theopi Rados
- Brandeis University, Department of Biology, Waltham, MA, 02453, USA
| | - Jasmin Kwak
- Brandeis University, Department of Biology, Waltham, MA, 02453, USA
| | - Anthony DiLucido
- University of Pennsylvania, Department of Biology, Philadelphia, PA, 19104, USA
| | - Daniel Safer
- University of Pennsylvania, Department of Physiology, Philadelphia, PA, 19104, USA
| | | | - Friedhelm Pfeiffer
- Biology II, Ulm University, 89069, Ulm, Germany
- Computational Biology Group, Max Planck Institute of Biochemistry, 82152, Martinsried, Germany
| | - Alexandre Bisson
- Brandeis University, Department of Biology, Waltham, MA, 02453, USA.
| | - Stefan Schulze
- University of Pennsylvania, Department of Biology, Philadelphia, PA, 19104, USA.
- Rochester Institute of Technology, Thomas H. Gosnell School of Life Sciences, Rochester, NY, 14623, USA.
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