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For: Howard-Till RA, Yao MC. Induction of gene silencing by hairpin RNA expression in Tetrahymena thermophila reveals a second small RNA pathway. Mol Cell Biol 2006;26:8731-42. [PMID: 17000759 PMCID: PMC1636817 DOI: 10.1128/mcb.01430-06] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Cheng CY, Hernández J, Turkewitz AP. VPS8D, a CORVET subunit, is required to maintain the contractile vacuole complex in Tetrahymena thermophila. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.11.07.566071. [PMID: 37986963 PMCID: PMC10659352 DOI: 10.1101/2023.11.07.566071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
2
Nabeel-Shah S, Garg J, Saettone A, Ashraf K, Lee H, Wahab S, Ahmed N, Fine J, Derynck J, Pu S, Ponce M, Marcon E, Zhang Z, Greenblatt JF, Pearlman RE, Lambert JP, Fillingham J. Functional characterization of RebL1 highlights the evolutionary conservation of oncogenic activities of the RBBP4/7 orthologue in Tetrahymena thermophila. Nucleic Acids Res 2021;49:6196-6212. [PMID: 34086947 PMCID: PMC8216455 DOI: 10.1093/nar/gkab413] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 04/22/2021] [Accepted: 05/04/2021] [Indexed: 12/18/2022]  Open
3
Lin IT, Yao MC. Selfing mutants link Ku proteins to mating type determination in Tetrahymena. PLoS Biol 2020;18:e3000756. [PMID: 32745139 PMCID: PMC7398496 DOI: 10.1371/journal.pbio.3000756] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Accepted: 07/07/2020] [Indexed: 11/26/2022]  Open
4
Wang Y, Sheng Y, Liu Y, Zhang W, Cheng T, Duan L, Pan B, Qiao Y, Liu Y, Gao S. A distinct class of eukaryotic MT-A70 methyltransferases maintain symmetric DNA N6-adenine methylation at the ApT dinucleotides as an epigenetic mark associated with transcription. Nucleic Acids Res 2020;47:11771-11789. [PMID: 31722409 PMCID: PMC7145601 DOI: 10.1093/nar/gkz1053] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Revised: 10/21/2019] [Accepted: 10/24/2019] [Indexed: 12/18/2022]  Open
5
Howard-Till R, Loidl J. Condensins promote chromosome individualization and segregation during mitosis, meiosis, and amitosis in Tetrahymena thermophila. Mol Biol Cell 2017;29:466-478. [PMID: 29237819 PMCID: PMC6014175 DOI: 10.1091/mbc.e17-07-0451] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Revised: 11/27/2017] [Accepted: 12/07/2017] [Indexed: 11/11/2022]  Open
6
Cheng CY, Young JM, Lin CYG, Chao JL, Malik HS, Yao MC. The piggyBac transposon-derived genes TPB1 and TPB6 mediate essential transposon-like excision during the developmental rearrangement of key genes in Tetrahymena thermophila. Genes Dev 2017;30:2724-2736. [PMID: 28087716 PMCID: PMC5238731 DOI: 10.1101/gad.290460.116] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2016] [Accepted: 12/07/2016] [Indexed: 12/20/2022]
7
Tetrahymena as a Unicellular Model Eukaryote: Genetic and Genomic Tools. Genetics 2017;203:649-65. [PMID: 27270699 DOI: 10.1534/genetics.114.169748] [Citation(s) in RCA: 71] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2016] [Accepted: 04/08/2016] [Indexed: 12/12/2022]  Open
8
Programmed Genome Rearrangements in Tetrahymena. Microbiol Spectr 2016;2. [PMID: 26104448 DOI: 10.1128/microbiolspec.mdna3-0012-2014] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
9
Woo TT, Chao JL, Yao MC. Dynamic distributions of long double-stranded RNA in Tetrahymena during nuclear development and genome rearrangements. J Cell Sci 2016;129:1046-58. [DOI: 10.1242/jcs.178236] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2015] [Accepted: 01/05/2016] [Indexed: 11/20/2022]  Open
10
Targeted Gene Disruption by Ectopic Induction of DNA Elimination in Tetrahymena. Genetics 2015. [PMID: 26205990 DOI: 10.1534/genetics.115.178525] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
11
Fukuda Y, Akematsu T, Attiq R, Tada C, Nakai Y, Pearlman RE. Role of the Cytosolic Heat Shock Protein 70 Ssa5 in the Ciliate Protozoan Tetrahymena thermophila. J Eukaryot Microbiol 2015;62:481-93. [DOI: 10.1111/jeu.12203] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2014] [Revised: 11/17/2014] [Accepted: 12/08/2014] [Indexed: 12/29/2022]
12
Burroughs AM, Ando Y, Aravind L. New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing. WILEY INTERDISCIPLINARY REVIEWS-RNA 2013;5:141-81. [PMID: 24311560 DOI: 10.1002/wrna.1210] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2013] [Revised: 10/03/2013] [Accepted: 11/01/2013] [Indexed: 12/19/2022]
13
Najle SR, Nusblat AD, Nudel CB, Uttaro AD. The Sterol-C7 desaturase from the ciliate Tetrahymena thermophila is a Rieske Oxygenase, which is highly conserved in animals. Mol Biol Evol 2013;30:1630-43. [PMID: 23603937 DOI: 10.1093/molbev/mst076] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
14
Howard-Till RA, Lukaszewicz A, Novatchkova M, Loidl J. A single cohesin complex performs mitotic and meiotic functions in the protist tetrahymena. PLoS Genet 2013;9:e1003418. [PMID: 23555314 PMCID: PMC3610610 DOI: 10.1371/journal.pgen.1003418] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2012] [Accepted: 02/12/2013] [Indexed: 01/08/2023]  Open
15
Loidl J, Lukaszewicz A, Howard-Till RA, Koestler T. The Tetrahymena meiotic chromosome bouquet is organized by centromeres and promotes interhomolog recombination. J Cell Sci 2012;125:5873-80. [PMID: 22976299 DOI: 10.1242/jcs.112664] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
16
Talsky KB, Collins K. Strand-asymmetric endogenous Tetrahymena small RNA production requires a previously uncharacterized uridylyltransferase protein partner. RNA (NEW YORK, N.Y.) 2012;18:1553-1562. [PMID: 22706992 PMCID: PMC3404375 DOI: 10.1261/rna.033530.112] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2012] [Accepted: 05/22/2012] [Indexed: 06/01/2023]
17
Tetrahymena thermophila JMJD3 homolog regulates H3K27 methylation and nuclear differentiation. EUKARYOTIC CELL 2012;11:601-14. [PMID: 22427430 DOI: 10.1128/ec.05290-11] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
18
Whole genome studies of Tetrahymena. Methods Cell Biol 2012;109:53-81. [PMID: 22444143 DOI: 10.1016/b978-0-12-385967-9.00004-9] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
19
Nowacki M, Shetty K, Landweber LF. RNA-Mediated Epigenetic Programming of Genome Rearrangements. Annu Rev Genomics Hum Genet 2011;12:367-89. [PMID: 21801022 DOI: 10.1146/annurev-genom-082410-101420] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
20
Howard-Till RA, Lukaszewicz A, Loidl J. The recombinases Rad51 and Dmc1 play distinct roles in DNA break repair and recombination partner choice in the meiosis of Tetrahymena. PLoS Genet 2011;7:e1001359. [PMID: 21483758 PMCID: PMC3069121 DOI: 10.1371/journal.pgen.1001359] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2010] [Accepted: 03/01/2011] [Indexed: 11/18/2022]  Open
21
Bouhouche K, Gout JF, Kapusta A, Bétermier M, Meyer E. Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling. Nucleic Acids Res 2011;39:4249-64. [PMID: 21216825 PMCID: PMC3105430 DOI: 10.1093/nar/gkq1283] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
22
Couvillion MT, Sachidanandam R, Collins K. A growth-essential Tetrahymena Piwi protein carries tRNA fragment cargo. Genes Dev 2010;24:2742-7. [PMID: 21106669 DOI: 10.1101/gad.1996210] [Citation(s) in RCA: 121] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
23
Mochizuki K. DNA rearrangements directed by non-coding RNAs in ciliates. WILEY INTERDISCIPLINARY REVIEWS. RNA 2010;1:376-87. [PMID: 21956937 PMCID: PMC3746294 DOI: 10.1002/wrna.34] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
24
Cheng CY, Vogt A, Mochizuki K, Yao MC. A domesticated piggyBac transposase plays key roles in heterochromatin dynamics and DNA cleavage during programmed DNA deletion in Tetrahymena thermophila. Mol Biol Cell 2010;21:1753-62. [PMID: 20357003 PMCID: PMC2869380 DOI: 10.1091/mbc.e09-12-1079] [Citation(s) in RCA: 114] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
25
Plattner H. Membrane Trafficking in Protozoa. INTERNATIONAL REVIEW OF CELL AND MOLECULAR BIOLOGY 2010;280:79-184. [DOI: 10.1016/s1937-6448(10)80003-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
26
Nowacki M, Landweber LF. Epigenetic inheritance in ciliates. Curr Opin Microbiol 2009;12:638-43. [PMID: 19879799 DOI: 10.1016/j.mib.2009.09.012] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2009] [Accepted: 09/10/2009] [Indexed: 01/12/2023]
27
Couvillion MT, Lee SR, Hogstad B, Malone CD, Tonkin LA, Sachidanandam R, Hannon GJ, Collins K. Sequence, biogenesis, and function of diverse small RNA classes bound to the Piwi family proteins of Tetrahymena thermophila. Genes Dev 2009;23:2016-32. [PMID: 19656801 DOI: 10.1101/gad.1821209] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
28
Duharcourt S, Lepère G, Meyer E. Developmental genome rearrangements in ciliates: a natural genomic subtraction mediated by non-coding transcripts. Trends Genet 2009;25:344-50. [PMID: 19596481 DOI: 10.1016/j.tig.2009.05.007] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2009] [Revised: 05/29/2009] [Accepted: 05/29/2009] [Indexed: 11/24/2022]
29
Kin5 knockdown in Tetrahymena thermophila using RNAi blocks cargo transport of Gef1. PLoS One 2009;4:e4873. [PMID: 19290045 PMCID: PMC2653729 DOI: 10.1371/journal.pone.0004873] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2008] [Accepted: 01/27/2009] [Indexed: 11/21/2022]  Open
30
Wilkes DE, Bennardo N, Chan CW, Chang YL, Corpuz EO, DuMond J, Eboreime JA, Erickson J, Hetzel J, Heyer EE, Hubenschmidt MJ, Kniazeva E, Kuhn H, Lum M, Sand A, Schep A, Sergeeva O, Supab N, Townsend CR, Ryswyk LV, Watson HE, Wiedeman AE, Rajagopalan V, Asai DJ. Identification and Characterization of Dynein Genes in Tetrahymena. Methods Cell Biol 2009;92:11-30. [DOI: 10.1016/s0091-679x(08)92002-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
31
Lepère G, Nowacki M, Serrano V, Gout JF, Guglielmi G, Duharcourt S, Meyer E. Silencing-associated and meiosis-specific small RNA pathways in Paramecium tetraurelia. Nucleic Acids Res 2008;37:903-15. [PMID: 19103667 PMCID: PMC2647294 DOI: 10.1093/nar/gkn1018] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
32
Lepère G, Bétermier M, Meyer E, Duharcourt S. Maternal noncoding transcripts antagonize the targeting of DNA elimination by scanRNAs in Paramecium tetraurelia. Genes Dev 2008;22:1501-12. [PMID: 18519642 PMCID: PMC2418586 DOI: 10.1101/gad.473008] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2008] [Accepted: 03/28/2008] [Indexed: 12/22/2022]
33
Combination of two regulatory elements in the Tetrahymena thermophila HSP70-1 gene controls heat shock activation. EUKARYOTIC CELL 2007;7:379-86. [PMID: 18055912 DOI: 10.1128/ec.00221-07] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
34
Howard-Till RA, Yao MC. Tudor nuclease genes and programmed DNA rearrangements in Tetrahymena thermophila. EUKARYOTIC CELL 2007;6:1795-804. [PMID: 17715366 PMCID: PMC2043382 DOI: 10.1128/ec.00192-07] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
35
Lee SR, Collins K. Physical and functional coupling of RNA-dependent RNA polymerase and Dicer in the biogenesis of endogenous siRNAs. Nat Struct Mol Biol 2007;14:604-10. [PMID: 17603500 DOI: 10.1038/nsmb1262] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2007] [Accepted: 05/22/2007] [Indexed: 12/23/2022]
36
Shi H, Tschudi C, Ullu E. Depletion of newly synthesized Argonaute1 impairs the RNAi response in Trypanosoma brucei. RNA (NEW YORK, N.Y.) 2007;13:1132-9. [PMID: 17526643 PMCID: PMC1894921 DOI: 10.1261/rna.474707] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
37
Liu Y, Taverna SD, Muratore TL, Shabanowitz J, Hunt DF, Allis CD. RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena. Genes Dev 2007;21:1530-45. [PMID: 17575054 PMCID: PMC1891430 DOI: 10.1101/gad.1544207] [Citation(s) in RCA: 188] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2007] [Accepted: 05/01/2007] [Indexed: 01/17/2023]
38
Davids BJ, Reiner DS, Birkeland SR, Preheim SP, Cipriano MJ, McArthur AG, Gillin FD. A new family of giardial cysteine-rich non-VSP protein genes and a novel cyst protein. PLoS One 2006;1:e44. [PMID: 17183673 PMCID: PMC1762436 DOI: 10.1371/journal.pone.0000044] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2006] [Accepted: 10/10/2006] [Indexed: 11/18/2022]  Open
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