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Liang R, Yang Q, Li Y, Yin G, Zhao G. Morphological and phylogenetic analyses reveal two new Penicillium species isolated from the ancient Great Wall loess in Beijing, China. Front Microbiol 2024; 15:1329299. [PMID: 38559343 PMCID: PMC10978590 DOI: 10.3389/fmicb.2024.1329299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2023] [Accepted: 02/29/2024] [Indexed: 04/04/2024] Open
Abstract
Introduction Penicillium species exhibit a broad distribution in nature and play a crucial role in human and ecological environments. Methods Two Penicillium species isolated from the ancient Great Wall loess in the Mentougou District of Beijing, China, were identified and described as new species, namely, Penicillium acidogenicum and P. floccosum, based on morphological characteristics and phylogenetic analyses of multiple genes including ITS, BenA, CaM, and RPB2 genes. Results Phylogenetic analyses showed that both novel species formed a distinctive lineage and that they were most closely related to P. chrzaszczii and P. osmophilum, respectively. Discussion Penicillium acidogenicum is characterized by biverticillate conidiophores that produce globose conidia and is distinguished from similar species by its capacity to grow on CYA at 30°C. Penicillium floccosum is typically recognized by its restricted growth and floccose colony texture. The description of these two new species provided additional knowledge and new insights into the ecology and distribution of Penicillium.
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Affiliation(s)
- Ruina Liang
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Research Center of Tree Breeding and Ecological Restoration, Beijing Forestry University, Beijing, China
| | - Qiqi Yang
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
| | - Ying Li
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
| | - Guohua Yin
- College of Biological and Chemical Engineering, Qilu Institute of Technology, Jinan, China
| | - Guozhu Zhao
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Research Center of Tree Breeding and Ecological Restoration, Beijing Forestry University, Beijing, China
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2
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Tang G, Man H, Wang J, Zou J, Zhao J, Han J. An oxidoreductase gene CtnD involved in citrinin biosynthesis in Monascus purpureus verified by CRISPR/Cas9 gene editing and overexpression. Mycotoxin Res 2023; 39:247-259. [PMID: 37269452 DOI: 10.1007/s12550-023-00491-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 05/19/2023] [Accepted: 05/23/2023] [Indexed: 06/05/2023]
Abstract
Monascus produces a kind of mycotoxin, citrinin, whose synthetic pathway is still not entirely clear. The function of CtnD, a putative oxidoreductase located upstream of pksCT in the citrinin gene cluster, has not been reported. In this study, the CtnD overexpressed strain and the Cas9 constitutively expressed chassis strain were obtained by genetic transformation mediated by Agrobacterium tumefaciens. The pyrG and CtnD double gene-edited strains were then obtained by transforming the protoplasts of the Cas9 chassis strain with in vitro sgRNAs. The results showed that overexpression of CtnD resulted in significant increases in citrinin content of more than 31.7% and 67.7% in the mycelium and fermented broth, respectively. The edited CtnD caused citrinin levels to be reduced by more than 91% in the mycelium and 98% in the fermented broth, respectively. It was shown that CtnD is a key enzyme involved in citrinin biosynthesis. RNA-Seq and RT-qPCR showed that the overexpression of CtnD had no significant effect on the expression of CtnA, CtnB, CtnE, and CtnF but led to distinct changes in the expression of acyl-CoA thioesterase and two MFS transporters, which may play an unknown role in citrinin metabolism. This study is the first to report the important function of CtnD in M. purpureus through a combination of CRISPR/Cas9 editing and overexpression.
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Affiliation(s)
- Guangfu Tang
- Key Lab of Pharmacognostics of Guizhou Province, College of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, 550002, China
| | - Haiqiao Man
- Key Lab of Pharmacognostics of Guizhou Province, College of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, 550002, China
| | - Jiao Wang
- Key Lab of Pharmacognostics of Guizhou Province, College of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, 550002, China
| | - Jie Zou
- Key Lab of Pharmacognostics of Guizhou Province, College of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, 550002, China
| | - Jiehong Zhao
- Key Lab of Pharmacognostics of Guizhou Province, College of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, 550002, China.
| | - Jie Han
- Key Lab of Pharmacognostics of Guizhou Province, College of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, 550002, China.
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3
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Ordóñez-Enireb E, Cucalón RV, Cárdenas D, Ordóñez N, Coello S, Elizalde P, Cárdenas WB. Antarctic fungi with antibiotic potential isolated from Fort William Point, Antarctica. Sci Rep 2022; 12:21477. [PMID: 36509821 PMCID: PMC9744802 DOI: 10.1038/s41598-022-25911-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Accepted: 12/06/2022] [Indexed: 12/14/2022] Open
Abstract
The Antarctic continent is one of the most inhospitable places on earth, where living creatures, mostly represented by microorganisms, have specific physiological characteristics that allow them to adapt to the extreme environmental conditions. These physiological adaptations can result in the production of unique secondary metabolites with potential biotechnological applications. The current study presents a genetic and antibacterial characterization of four Antarctic fungi isolated from soil samples collected in Pedro Vicente Maldonado Scientific Station, at Fort William Point, Greenwich Island, Antarctica. Based on the sequences of the internal transcribed spacer (ITS) region, the fungi were identified as Antarctomyces sp., Thelebolus sp., Penicillium sp., and Cryptococcus gilvescens. The antibacterial activity was assessed against four clinical bacterial strains: Escherichia coli, Klebsiella pneumoniae, Enterococcus faecalis, and Staphylococcus aureus, by a modified bacterial growth inhibition assay on agar plates. Results showed that C. gilvescens and Penicillium sp. have potential antibiotic activity against all bacterial strains. Interestingly, Thelebolus sp. showed potential antibiotic activity only against E. coli. In contrast, Antarctomyces sp. did not show antibiotic activity against any of the bacteria tested under our experimental conditions. This study highlights the importance of conservation of Antarctica as a source of metabolites with important biomedical applications.
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Affiliation(s)
- Eunice Ordóñez-Enireb
- grid.442143.40000 0001 2107 1148Laboratorio para Investigaciones Biomédicas, Facultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, Guayaquil, Ecuador
| | - Roberto V. Cucalón
- grid.442143.40000 0001 2107 1148Laboratorio para Investigaciones Biomédicas, Facultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, Guayaquil, Ecuador ,grid.35403.310000 0004 1936 9991Program in Ecology, Evolution, and Conservation Biology, University of Illinois at Urbana-Champaign, Natural Resources Building 607 E. Peabody Dr., Champaign, IL 61820 USA
| | - Diana Cárdenas
- grid.442143.40000 0001 2107 1148Laboratorio para Investigaciones Biomédicas, Facultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, Guayaquil, Ecuador
| | - Nadia Ordóñez
- grid.442143.40000 0001 2107 1148Laboratorio para Investigaciones Biomédicas, Facultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, Guayaquil, Ecuador ,grid.420044.60000 0004 0374 4101Biochemistry and Biosupport, Research and Development, Crop Science, Bayer AG, Monheim, Germany
| | - Santiago Coello
- grid.442143.40000 0001 2107 1148Laboratorio para Investigaciones Biomédicas, Facultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, Guayaquil, Ecuador
| | - Paola Elizalde
- grid.442143.40000 0001 2107 1148Laboratorio para Investigaciones Biomédicas, Facultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, Guayaquil, Ecuador ,grid.25152.310000 0001 2154 235XVaccine and Infectious Disease Organization (VIDO), University of Saskatchewan, 120 Veterinary Road, Saskatoon, SK S7N5E3 Canada ,grid.25152.310000 0001 2154 235XSchool of Public Health, University of Saskatchewan, Saskatoon, SK S7N5E5 Canada
| | - Washington B. Cárdenas
- grid.442143.40000 0001 2107 1148Laboratorio para Investigaciones Biomédicas, Facultad de Ciencias de la Vida, Escuela Superior Politécnica del Litoral, Guayaquil, Ecuador
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4
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Sagita R, Quax WJ, Haslinger K. Current State and Future Directions of Genetics and Genomics of Endophytic Fungi for Bioprospecting Efforts. Front Bioeng Biotechnol 2021; 9:649906. [PMID: 33791289 PMCID: PMC8005728 DOI: 10.3389/fbioe.2021.649906] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 02/16/2021] [Indexed: 12/16/2022] Open
Abstract
The bioprospecting of secondary metabolites from endophytic fungi received great attention in the 1990s and 2000s, when the controversy around taxol production from Taxus spp. endophytes was at its height. Since then, hundreds of reports have described the isolation and characterization of putative secondary metabolites from endophytic fungi. However, only very few studies also report the genetic basis for these phenotypic observations. With low sequencing cost and fast sample turnaround, genetics- and genomics-based approaches have risen to become comprehensive approaches to study natural products from a wide-range of organisms, especially to elucidate underlying biosynthetic pathways. However, in the field of fungal endophyte biology, elucidation of biosynthetic pathways is still a major challenge. As a relatively poorly investigated group of microorganisms, even in the light of recent efforts to sequence more fungal genomes, such as the 1000 Fungal Genomes Project at the Joint Genome Institute (JGI), the basis for bioprospecting of enzymes and pathways from endophytic fungi is still rather slim. In this review we want to discuss the current approaches and tools used to associate phenotype and genotype to elucidate biosynthetic pathways of secondary metabolites in endophytic fungi through the lens of bioprospecting. This review will point out the reported successes and shortcomings, and discuss future directions in sampling, and genetics and genomics of endophytic fungi. Identifying responsible biosynthetic genes for the numerous secondary metabolites isolated from endophytic fungi opens the opportunity to explore the genetic potential of producer strains to discover novel secondary metabolites and enhance secondary metabolite production by metabolic engineering resulting in novel and more affordable medicines and food additives.
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Affiliation(s)
| | | | - Kristina Haslinger
- Groningen Institute of Pharmacy, Chemical and Pharmaceutical Biology, University of Groningen, Groningen, Netherlands
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5
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Bartholomew HP, Bradshaw M, Jurick WM, Fonseca JM. The Good, the Bad, and the Ugly: Mycotoxin Production During Postharvest Decay and Their Influence on Tritrophic Host-Pathogen-Microbe Interactions. Front Microbiol 2021; 12:611881. [PMID: 33643240 PMCID: PMC7907610 DOI: 10.3389/fmicb.2021.611881] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 01/22/2021] [Indexed: 12/18/2022] Open
Abstract
Mycotoxins are a prevalent problem for stored fruits, grains, and vegetables. Alternariol, aflatoxin, and patulin, produced by Alternaria spp., Aspergillus spp., and Penicillium spp., are the major mycotoxins that negatively affect human and animal health and reduce fruit and produce quality. Control strategies for these toxins are varied, but one method that is increasing in interest is through host microbiome manipulation, mirroring a biocontrol approach. While the majority of mycotoxins and other secondary metabolites (SM) produced by fungi impact host–fungal interactions, there is also an interplay between the various organisms within the host microbiome. In addition to SMs, these interactions involve compounds such as signaling molecules, plant defense and growth hormones, and metabolites produced by both the plants and microbial community. Therefore, studies to understand the impact of the various toxins impacting the beneficial and harmful microorganisms that reside within the microbiome is warranted, and could lead to identification of safe analogs for antimicrobial activity to reduce fruit decay. Additionally, exploring the composition of the microbial carposphere of host plants is likely to shed light on developing a microbial consortium to maintain quality during storage and abate mycotoxin contamination.
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Affiliation(s)
- Holly P Bartholomew
- Food Quality Laboratory, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, United States
| | - Michael Bradshaw
- Food Quality Laboratory, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, United States
| | - Wayne M Jurick
- Food Quality Laboratory, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, United States
| | - Jorge M Fonseca
- Food Quality Laboratory, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, United States
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6
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Fernandez-Bunster G. Diversity, Phylogenetic Profiling of Genus Penicillium, and Their Potential Applications. Fungal Biol 2021. [DOI: 10.1007/978-3-030-67561-5_10] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Otto M, Pretorius B, Kritzinger Q, Schönfeldt H. Contamination of freshly harvested Bambara groundnut (
Vigna subterranea
) seed from Mpumalanga, South Africa, with mycotoxigenic fungi. J Food Saf 2020. [DOI: 10.1111/jfs.12846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Margot Otto
- Department of Animal and Wildlife Science, Institute of Food Nutrition and Well‐Being University of Pretoria Pretoria South Africa
| | - Beulah Pretorius
- Department of Animal and Wildlife Science, Institute of Food Nutrition and Well‐Being University of Pretoria Pretoria South Africa
| | - Quenton Kritzinger
- Department of Plant and Soil Sciences University of Pretoria Pretoria South Africa
| | - Hettie Schönfeldt
- Department of Animal and Wildlife Science, Institute of Food Nutrition and Well‐Being University of Pretoria Pretoria South Africa
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8
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Otero C, Arredondo C, Echeverría-Vega A, Gordillo-Fuenzalida F. Penicillium spp. mycotoxins found in food and feed and their health effects. WORLD MYCOTOXIN J 2020. [DOI: 10.3920/wmj2019.2556] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Mycotoxins are toxic secondary metabolites produced by fungi. These compounds have different structures and target different organs, acting at different steps of biological processes inside the cell. Around 32 mycotoxins have been identified in fungal Penicillium spp. isolated from food and feed. Some of these species are important pathogens which contaminate food, such as maize, cereals, soybeans, sorghum, peanuts, among others. These microorganisms can be present in different steps of the food production process, such as plant growth, harvest, drying, elaboration, transport, and packaging. Although some Penicillium spp. are pathogens, some of them are used in elaboration of processed foods, such as cheese and sausages. This review summarises the Penicillium spp. mycotoxin toxicity, focusing mainly on the subgenus Penicillium, frequently found in food and feed. Toxicity is reviewed both in animal models and cultured cells. Finally, some aspects of their regulations are discussed.
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Affiliation(s)
- C. Otero
- Escuela de Química y Farmacia, Facultad de Medicina, Universidad Andrés Bello, República 252, Santiago, Chile
| | - C. Arredondo
- Laboratorio de Neuroepigenética, Instituto de Ciencias Biomédicas (ICB), Facultad de Medicina y Facultad de Ciencias de la Vida, Universidad Andrés Bello, República 330, Santiago, Chile
| | - A. Echeverría-Vega
- Centro de Investigación en Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Postgrado, Universidad Católica del Maule, Talca, Chile
| | - F. Gordillo-Fuenzalida
- Centro de Biotecnología de los Recursos Naturales (CENBIO), Laboratorio de Microbiología Aplicada, Facultad de Ciencias Agrarias y Forestales, Universidad Católica del Maule, Avda. San Miguel 3605, Talca, Chile
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9
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Bellini A, Ferrocino I, Cucu MA, Pugliese M, Garibaldi A, Gullino ML. A Compost Treatment Acts as a Suppressive Agent in Phytophthora capsici - Cucurbita pepo Pathosystem by Modifying the Rhizosphere Microbiota. FRONTIERS IN PLANT SCIENCE 2020; 11:885. [PMID: 32670324 PMCID: PMC7327441 DOI: 10.3389/fpls.2020.00885] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Accepted: 05/29/2020] [Indexed: 05/05/2023]
Abstract
Phytophthora capsici Leonian (PHC) is a filamentous pathogen oomycete that causes root, fruit, foliar and crown rot over a wide host range, including the economically and nutritionally important summer squash (Cucurbita pepo var. cylindrica L.) crop. PHC chemical control strategies are difficult to adopt, due to the limited number of registered chemicals that are permitted and the scalar harvest system. For these reasons, other strategies, such as the use of waste-based composts that can act as suppressive agents against several soilborne pathogens, have been studied intensively. It is well known that compost's microbiota plays an important role to confer its suppressive ability. In this study, four different composts were analyzed with both 16S rRNA gene and 18S rRNA gene real-time PCR amplification and with 26S gene amplicon-based sequencing; the total abundance of the bacterial and fungal communities was found to be higher compared to literature, thus confirming that the four composts were a good inoculum source for agricultural applications. The core mycobiota was mainly composed of 31 genera; nevertheless, it was possible to observe a clear predominance of the same few taxa in all the composts. The four composts were then tested, at different concentrations (1-10-20% v/v), to establish their ability to confer suppressiveness to the Phytophthora capsici (PHC) - Cucurbita pepo pathosystem in controlled greenhouse pot trials. A total of 12 compost mixtures were considered, and of these, one (Trichoderma-enriched compost at 10% v/v) was able to statistically reduce the disease incidence caused by PHC (by 50% compared to the untreated control). Hence, the microbiota composition of the most effective compost treatment was investigated and compared with untreated and chemical (metalaxyl) controls. Mycobiota sequencing showed genera differences between the three treatments, with relative abundances of several fungal genera that were significantly different among the samples. Moreover, PCA analyses clustered the compost treatment differently from the chemical and the untreated controls. These findings suggest that suppressive activity of a compost is strictly influenced by its microbiota and the applied dosage, but the ability to induce a shaping in the rhizosphere microbial composition is also required.
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Affiliation(s)
- Alessio Bellini
- AGROINNOVA – Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy
- Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy
| | - Ilario Ferrocino
- Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy
| | - Maria Alexandra Cucu
- AGROINNOVA – Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy
| | - Massimo Pugliese
- AGROINNOVA – Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy
- Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy
- AgriNewTech s.r.l., Turin, Italy
| | - Angelo Garibaldi
- AGROINNOVA – Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy
| | - Maria Lodovica Gullino
- AGROINNOVA – Centre of Competence for the Innovation in the Agro-Environmental Sector, University of Turin, Turin, Italy
- Agricultural, Forestry and Food Sciences Department (DISAFA), University of Turin, Turin, Italy
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Tannous J, Barda O, Luciano-Rosario D, Prusky DB, Sionov E, Keller NP. New Insight Into Pathogenicity and Secondary Metabolism of the Plant Pathogen Penicillium expansum Through Deletion of the Epigenetic Reader SntB. Front Microbiol 2020; 11:610. [PMID: 32328048 PMCID: PMC7160234 DOI: 10.3389/fmicb.2020.00610] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Accepted: 03/19/2020] [Indexed: 12/23/2022] Open
Abstract
Penicillium expansum is one of the most harmful post-harvest pathogens of pomaceous fruits and the causal agent of blue rot disease. During infection, P. expansum produces the toxic secondary metabolites patulin and citrinin that can impact virulence and, further, render the fruit inedible. Several studies have shown that epigenetic machinery controls synthesis of secondary metabolites in fungi. In this regard, the epigenetic reader, SntB, has been reported to govern the production of multiple toxins in Aspergillus species, and impact virulence of plant pathogenic fungi. Here we show that deletion of sntB in P. expansum results in several phenotypic changes in the fungus including stunted vegetative growth, reduced conidiation, but enhanced germination rates as well as decreased virulence on Golden Delicious apples. In addition, a decrease in both patulin and citrinin biosynthesis in vitro and patulin in apples, was observed. SntB positively regulates expression of three global regulators of virulence and secondary metabolism (LaeA, CreA, and PacC) which may explain in part some of the phenotypic and virulence defects of the PeΔsntB strain. Lastly, results from this study revealed that the controlled environmental factors (low temperatures and high CO2 levels) to which P. expansum is commonly exposed during fruit storage, resulted in a significant reduction of sntB expression and consequent patulin and citrinin reduction. These data identify the epigenetic reader SntB as critical factor regulated in post-harvest pathogens under storage conditions and a potential target to control fungal colonization and decaying of stored fruit.
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Affiliation(s)
- Joanna Tannous
- Department of Medical Microbiology and Immunology, University of Wisconsin - Madison, Madison, WI, United States
| | - Omer Barda
- Institute of Postharvest and Food Sciences, The Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
| | | | - Dov B Prusky
- Institute of Postharvest and Food Sciences, The Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel.,College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
| | - Edward Sionov
- Institute of Postharvest and Food Sciences, The Volcani Center, Agricultural Research Organization, Rishon LeZion, Israel
| | - Nancy P Keller
- Department of Medical Microbiology and Immunology, University of Wisconsin - Madison, Madison, WI, United States.,Food Research Institute, University of Wisconsin - Madison, Madison, WI, United States.,Department of Bacteriology, University of Wisconsin - Madison, Madison, WI, United States
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