Genome Sequence of "Candidatus Viridilinea halotolerans" Chok-6, Isolated from a Saline Sulfide-Rich Spring

Element sulfur-based autotrophic denitrification constructed wetland as an efficient approach for nitrogen removal from low C/N wastewater

Constructed wetlands (CWs) integrated with sulfur autotrophic denitrification to stimulate high-rate nitrogen removal from carbon-limited wastewater holds particular application prospect due to no excessive carbon source addition, high efficiency, and good stability. In this study, we conducted elemental sulfur-based constructed wetland (SCW) and traditional constructed wetland (CW) under different C/N (2, 1, and 0.5) to explore the feasibility and mechanisms for nitrogen removal from low C/N wastewater. Compared with CW, SCW was demonstrated more robust in nitrogen removal in the case of low C/N influent. When the influent C/N control was at 0.5, SCW observed total nitrogen (TN) and nitrate removal efficiency of 69.36 ± 3.96% and 81.71 ± 3.96%, with the corresponding removal rate of 1.18 ± 0.66 and 1.70 ± 0.92 g-N·m^-2·d^-1, which were 2.11 and 10.03 times of CW, respectively. The nitrate removal rate constant k in the SCW was 1.05, 3.83, and 10.33 times higher than the CW with C/N of 2, 1 and 0.5. Furthermore, 14.40, 54.51, and 79.82% of nitrogen were removed by the sulfur autotrophic denitrification (SAD) in SCW, which also contributed 43.89, 73.68, and 71.70% of sulfate production. Moreover, the combined system of CW-SCW is proved be an efficient operation mode for simultaneously removing total ammonia nitrogen (TAN) and nitrate. In the SCW, the richness of the microbial community was improved and sulfur-oxidizing genera (e.g. Thiobacillus, Sulfurimonas) was selectively enriched, which affect the performance the elemental sulfur-based denitrification process. The nitrate reduction pathway was overwhelmed by denitrification and the dissimilatory nitrate reduction process. These findings offer elemental sulfur-based autotrophic denitrification constructed wetland has excellent potential to enhance nitrogen removal from carbon-limited wastewater.

'Candidatus Chloroploca mongolica' sp. nov. a new mesophilic filamentous anoxygenic phototrophic bacterium

A mesophilic filamentous anoxygenic phototrophic bacterium, designated M50-1, was isolated from a microbial mat of the Chukhyn Nur soda lake (northeastern Mongolia) with salinity of 5-14 g/L and pH 8.0-9.3. The organism is a strictly anaerobic phototrophic bacterium, which required sulfide for phototrophic growth. The cells formed short undulate trichomes surrounded by a thin sheath and containing gas vesicles. Motility of the trichomes was not observed. The cells contained chlorosomes. The antenna pigments were bacteriochlorophyll d and β- and γ-carotenes. Analysis of the genome assembled from the metagenome of the enrichment culture revealed all the enzymes of the 3-hydroxypropionate bi-cycle for autotrophic CO2 assimilation. The genome also contained the genes encoding a type IV sulfide:quinone oxidoreductase (sqrX). The organism had no nifHDBK genes, encoding the proteins of the nitrogenase complex responsible for dinitrogen fixation. The DNA G + C content was 58.6%. The values for in silico DNA‒DNA hybridization and average nucleotide identity between M50-1 and a closely related bacterium 'Ca. Chloroploca asiatica' B7-9 containing bacteriochlorophyll c were 53.4% and 94.0%, respectively, which corresponds to interspecies differences. Classification of the filamentous anoxygenic phototrophic bacterium M50-1 as a new 'Ca. Chloroploca' species was proposed, with the species name 'Candidatus Chloroploca mongolica' sp. nov.

Nitrogen Metabolism of an Anoxygenic Filamentous Phototrophic Bacterium Oscillocholris trichoides Strain DG-6

Abstract—

The possible nitrogen sources for Osc. trichoides DG6, a typical strain of the Oscillochloridaceae family, are ammonium, N2, glutamate, asparagine, glycine, and glutamine. The assimilation of molecular nitrogen occurs with the participation of nitrogenase, the structural gene of which, nifH, is located in the gene cluster which also includes the genes of the nifD and nifK nitrogenase subunits and the auxiliary nifB gene. Considering that nifHBDK clusters have been also annotated in the genomes of other members of the Oscillochloridaceae family, including uncultured and candidate taxa, it can be assumed that the ability to fix nitrogen is a property immanent for this entire family. The pathways for assimilating ammonium in the cells grown using different nitrogen sources may differ. Osc. trichoides DG6 growing in a medium containing ammonium assimilated it with the participation of glutamate dehydrogenase, which is determined by a single gene. The expression product of this gene has dual functionality and can be used to implement the reaction with both NAD and NADP. With the growth of Osc. trichoides DG6 on a medium with glutamate as the only nitrogen source all the enzymes necessary for the implementation of the GS‑GOGAT pathway were found in the cells. However, for the glutamine synthetase reaction, ammonium, which was absent in the growth medium, was required. The source of ammonium may be glutamate metabolized through glutamate dehydrogenase.

‘Candidatus Oscillochloris kuznetsovii’ a novel mesophilic filamentous anoxygenic phototrophic Chloroflexales bacterium from Arctic coastal environments

Chloroflexales bacteria are mostly known as filamentous anoxygenic phototrophs that thrive as members of the microbial communities of hot spring cyanobacterial mats. Recently, we described many new Chloroflexales species from non-thermal environments and showed that mesophilic Chloroflexales are more diverse than previously expected. Most of these species were isolated from aquatic environments of mid-latitudes. Here, we present the comprehensive characterization of a new filamentous multicellular anoxygenic phototrophic Chloroflexales bacterium from an Arctic coastal environment (Kandalaksha Gulf, the White Sea). Phylogenomic analysis and 16S rRNA phylogeny indicated that this bacterium belongs to the Oscillochloridaceae family as a new species. We propose that this species be named ‘Candidatus Oscillochloris kuznetsovii’. The genomes of this species possessed genes encoding sulfide:quinone reductase, the nitrogenase complex and the Calvin cycle, which indicate potential for photoautotrophic metabolism. We observed only mesophilic anaerobic anoxygenic phototrophic growth of this novel bacterium. Electron microphotography showed the presence of chlorosomes, polyhydroxyalkanoate-like granules and polyphosphate-like granules in the cells. High-performance liquid chromatography also revealed the presence of bacteriochlorophylls a, c and d as well as carotenoids. In addition, we found that this bacterium is present in benthic microbial communities of various coastal environments of the Kandalaksha Gulf.