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Liu T, Wang Y, Feng L, Tian X, Cui J, Yu Z, Wang C, Zhang B, James TD, Ma X. 2D Strategy for the Construction of an Enzyme-Activated NIR Fluorophore Suitable for the Visual Sensing and Profiling of Homologous Nitroreductases from Various Bacterial Species. ACS Sens 2021; 6:3348-3356. [PMID: 34469146 PMCID: PMC8477384 DOI: 10.1021/acssensors.1c01216] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Accepted: 08/19/2021] [Indexed: 12/15/2022]
Abstract
Nitroreductases (NTRs) mediate the reduction of nitroaromatic compounds to the corresponding nitrite, hydroxylamine, or amino derivatives. The activity of NTRs in bacteria facilitates the metabolic activation and antibacterial activity of 5-nitroimidazoles. Therefore, NTR activity correlates with the drug susceptibility and resistance of pathogenic bacteria. As such, it is important to develop a rapid and visual assay for the real-time sensing of bacterial NTRs for the evaluation and development of antibiotics. Herein, an activatable near-infrared fluorescent probe (HC-NO2) derived from a hemicyanine fluorophore was designed and developed based on two evaluation factors, including the calculated partition coefficient (Clog P) and fluorescence wavelength. Using HC-NO2 as the special substrate of NTRs, NTR activity can be assayed efficiently, and then, bacteria can be imaged based on the detection of NTRs. More importantly, a sensitive in-gel assay using HC-NO2 has been developed to selectively identify NTRs and sensitively determine NTR activity. Using the in-gel assay, NTRs from various bacterial species have been profiled visually from the "fluorescence fingerprints", which facilitates the rapid identification of NTRs from bacterial lysates. Thus, various homologous NTRs were identified from three metronidazole-susceptible bacterial species as well as seven unsusceptible species, which were confirmed by the whole-genome sequence. As such, the evaluation of NTRs from different bacterial species should help improve the rational usage of 5-nitroimidazole drugs as antibiotics.
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Affiliation(s)
- Tao Liu
- Dalian
Key Laboratory of Metabolic Target Characterization and Traditional
Chinese Medicine Intervention, College of Pharmacy, Dalian Medical University, Dalian 116044, China
- State
Key Laboratory of Fine Chemicals, Dalian
University of Technology, Dalian 116024, China
| | - Yifei Wang
- Dalian
Key Laboratory of Metabolic Target Characterization and Traditional
Chinese Medicine Intervention, College of Pharmacy, Dalian Medical University, Dalian 116044, China
| | - Lei Feng
- Dalian
Key Laboratory of Metabolic Target Characterization and Traditional
Chinese Medicine Intervention, College of Pharmacy, Dalian Medical University, Dalian 116044, China
| | - Xiangge Tian
- Dalian
Key Laboratory of Metabolic Target Characterization and Traditional
Chinese Medicine Intervention, College of Pharmacy, Dalian Medical University, Dalian 116044, China
| | - Jingnan Cui
- State
Key Laboratory of Fine Chemicals, Dalian
University of Technology, Dalian 116024, China
| | - Zhenlong Yu
- Dalian
Key Laboratory of Metabolic Target Characterization and Traditional
Chinese Medicine Intervention, College of Pharmacy, Dalian Medical University, Dalian 116044, China
| | - Chao Wang
- Dalian
Key Laboratory of Metabolic Target Characterization and Traditional
Chinese Medicine Intervention, College of Pharmacy, Dalian Medical University, Dalian 116044, China
| | - Baojing Zhang
- Dalian
Key Laboratory of Metabolic Target Characterization and Traditional
Chinese Medicine Intervention, College of Pharmacy, Dalian Medical University, Dalian 116044, China
| | - Tony D. James
- Department
of Chemistry, University of Bath, Bath BA2 7AY, U.K.
- School
of Chemistry and Chemical Engineering, Henan
Normal University, Xinxiang 453007, China
| | - Xiaochi Ma
- Dalian
Key Laboratory of Metabolic Target Characterization and Traditional
Chinese Medicine Intervention, College of Pharmacy, Dalian Medical University, Dalian 116044, China
- Jiangsu
Key Laboratory of New Drug Research and Clinical Pharmacy, Xuzhou Medical University, Xuzhou 221004, China
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Coleman NV, Rich DJ, Tang FHM, Vervoort RW, Maggi F. Biodegradation and Abiotic Degradation of Trifluralin: A Commonly Used Herbicide with a Poorly Understood Environmental Fate. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:10399-10410. [PMID: 32786599 DOI: 10.1021/acs.est.0c02070] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Trifluralin is a widely used dinitroaniline herbicide, which can persist in the environment and has substantial ecotoxicity, especially to aquatic organisms. Trifluralin is very insoluble in water (0.22 mg/L at 20 °C) and highly volatile (vapor pressure of 6.7 mPa at 20 °C); these physicochemical properties determine a large part of its environmental fate, which includes rapid loss from soils if surface-applied, strong binding to soil organic matter, and negligible leaching into water. The trifluralin structure contains a tertiary amino group, two nitro-groups and a trifluoromethyl- group. Despite the strongly xenobiotic character of some of these substituents, biodegradation of trifluralin does occur, and pure cultures of bacteria and fungi capable of partially degrading the molecule either by dealkylation or nitro-group reduction have been identified. There are many unanswered questions about the environmental fate and metabolism of this herbicide; the genes and enzymes responsible for biodegradation are largely unknown, the relative roles of abiotic processes vs growth-linked biodegradation vs cometabolism are unresolved, and the impact of different environmental factors on the rates and extents of biodegradation are not clear. Here, we summarize the relevant literature on the persistence and environmental fate of trifluralin with a focus on biodegradation pathways and mechanisms, and we identify the current major knowledge gaps for future research.
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Affiliation(s)
- Nicholas V Coleman
- School of Life and Environmental Sciences, Building F22, University of Sydney, Sydney, New South Wales, Australia, 2006
| | - Deborah J Rich
- School of Life and Environmental Sciences, Building F22, University of Sydney, Sydney, New South Wales, Australia, 2006
| | - Fiona H M Tang
- Laboratory for Advanced Environmental Engineering Research, School of Civil Engineering, Building J05, University of Sydney, Sydney, New South Wales, Australia, 2006
| | - R Willem Vervoort
- School of Life and Environmental Sciences, Building C81, University of Sydney, Sydney, New South Wales, Australia 2006
| | - Federico Maggi
- Laboratory for Advanced Environmental Engineering Research, School of Civil Engineering, Building J05, University of Sydney, Sydney, New South Wales, Australia, 2006
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A novel cold-adapted nitroreductase from Psychrobactersp. ANT206: Heterologous expression, characterization and nitrobenzene reduction capacity. Enzyme Microb Technol 2019; 131:109434. [DOI: 10.1016/j.enzmictec.2019.109434] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2019] [Revised: 09/17/2019] [Accepted: 09/18/2019] [Indexed: 01/20/2023]
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