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Ren X, Ma W, Xuan S, Li D, Wang Y, Xu Y, Feng D, Zhao J, Chen X, Luo S, Shen S, Gu A. Hormones and carbohydrates synergistically regulate the formation of swollen roots in a Chinese cabbage translocation line. HORTICULTURE RESEARCH 2023;10:uhad121. [PMID: 37554342 PMCID: PMC10405133 DOI: 10.1093/hr/uhad121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Accepted: 05/23/2023] [Indexed: 08/10/2023]

Affiliation(s)

Xiaojing Ren State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China
Wei Ma State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China
Shuxin Xuan State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China
Dandan Li State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China
Yanhua Wang State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China
Yuanchao Xu State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China
Daling Feng State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China
Jianjun Zhao State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China
Xueping Chen State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China
Shuangxia Luo State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China
Shuxing Shen State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China
Aixia Gu State Key Laboratory of North China Crop Improvement and Regulation, Key Laboratory of Vegetable Germplasm Innovation and Utilization of Hebei, Collaborative Innovation Center of Vegetable Industry in Hebei, College of Horticulture, Hebei Agricultural University, 071000 Baoding, China

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Huang Y, Li Y, Liu Z, Chen W, Wang Y, Wang X, Liu Y, Zheng Y. Combined analysis of the transcriptome and metabolome provides insights into the fleshy stem expansion mechanism in stem lettuce. FRONTIERS IN PLANT SCIENCE 2022;13:1101199. [PMID: 36589074 PMCID: PMC9798005 DOI: 10.3389/fpls.2022.1101199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Accepted: 11/28/2022] [Indexed: 06/17/2023]

Abstract

As a stem variety of lettuce, the fleshy stem is the main product organ of stem lettuce. The molecular mechanism of fleshy stem expansion in stem lettuce is a complex biological process. In the study, the material accumulation, gene expression, and morphogenesis during fleshy stem expansion process were analyzed by the comparative analysis of metabolome, transcriptome and the anatomical studies. The anatomical studies showed that the occurrence and activity of vascular cambium mainly led to the development of fleshy stems; and the volume of pith cells gradually increased and arranged tightly during the expansion process. A total of 822 differential metabolites and 9,383 differentially expressed genes (DEGs) were identified by the metabolomics and transcriptomics analyses, respectively. These changes significantly enriched in sugar synthesis, glycolysis, and plant hormone anabolism. The expression profiles of genes in the sugar metabolic pathway gradually increased in fleshy stem expansion process. But the sucrose content was the highest in the early stage of fleshy stem expansion, other sugars such as fructose and glucose content increased during fleshy stem expansion process. Plant hormones, including IAA, GA, CTK, and JA, depicted important roles at different stem expansion stages. A total of 1,805 DEGs were identified as transcription factors, such as MYB, bHLH, and bZIP, indicating that these transcription factor families might regulate the fleshy stems expansion in lettuce. In addition, the expression patterns identified by qRT-PCR were consistent with the expression abundance identified by the transcriptome data. The important genes and metabolites identified in the lettuce fleshy stem expansion process will provide important information for the further molecular mechanism study of lettuce fleshy stem growth and development.

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Li M, Xie F, Li J, Sun B, Luo Y, Zhang Y, Chen Q, Wang Y, Zhang F, Zhang Y, Lin Y, Wang X, Tang H. Tumorous Stem Development of Brassica Juncea: A Complex Regulatory Network of Stem Formation and Identification of Key Genes in Glucosinolate Biosynthesis. PLANTS (BASEL, SWITZERLAND) 2020;9:E1006. [PMID: 32784853 PMCID: PMC7466272 DOI: 10.3390/plants9081006] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/13/2020] [Revised: 07/31/2020] [Accepted: 08/06/2020] [Indexed: 11/16/2022]

Abstract

Stem mustard is a stem variety of mustard, an important Brassica vegetable. The formation and development of the tumorous stem, which is the key organ for the direct yield and quality, is a complex biological process involving morphogenesis, material accumulation and gene regulation. In this study, we demonstrated through anatomical studies that stem swelling is mainly dependent on the increase in the number of cells and the volume of parenchyma cells in the cortex and pith. To further understand transcript and metabolic changes during stem swelling, we obtained 27,901 differentially expressed genes, of which 671 were specifically detected using transcriptome sequencing technology in all four stages of stem swelling. Functional annotation identified enrichment for genes involved in photosynthesis, energy metabolism, cell growth, sulfur metabolism and glucosinolate biosynthesis. Glucosinolates are a group of nitrogen- and sulfur-containing secondary metabolites, which largely exist in the Cruciferous vegetables. HPLC analysis of the contents and components of glucosinolates in four different stem development stages revealed eight glucosinolates, namely, three aliphatic glucosinolates (sinigrin, glucoalyssin and gluconapin), four indole glucosinolates (4-hydroxyglucobrassicin, glucobrassicin, 4-methoxyglucobrassicin and neoglucobrassicin) and one aromatic glucosinolate (gluconasturtiin). All these types of glucosinolates showed a significant downward trend during the stem swelling period. The content of aliphatic glucosinolates was the highest, with sinigrin being the main component. In addition, qPCR was used to validate the expression of nine genes involved in glucosinolate biosynthesis. Most of these genes were down-regulated during stem swelling in qPCR, which is consistent with transcriptome data. These data provide a basic resource for further molecular and genetic research on Brassica juncea.

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Affiliation(s)

Mengyao Li College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.)
Fangjie Xie College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.)
Jie Li College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.)
Bo Sun College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.)
Ya Luo College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.)
Yong Zhang College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.)
Qing Chen College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.)
Yan Wang College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.) Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu 611130, China
Fen Zhang College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.)
Yunting Zhang College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.) Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu 611130, China
Yuanxiu Lin College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.) Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu 611130, China
Xiaorong Wang College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.) Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu 611130, China
Haoru Tang College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (Y.W.); (F.Z.); (Y.Z.); (Y.L.); (X.W.) Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu 611130, China

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Li M, Xie F, He Q, Li J, Liu J, Sun B, Luo Y, Zhang Y, Chen Q, Zhang F, Gong R, Wang Y, Wang X, Tang H. Expression Analysis of XTH in Stem Swelling of Stem Mustard and Selection of Reference Genes. Genes (Basel) 2020;11:genes11010113. [PMID: 31968559 PMCID: PMC7016721 DOI: 10.3390/genes11010113] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 01/08/2020] [Accepted: 01/15/2020] [Indexed: 02/05/2023] Open

Affiliation(s)

Mengyao Li College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.)
Fangjie Xie College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.)
Qi He College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.)
Jie Li College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.)
Jiali Liu College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.)
Bo Sun College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.)
Ya Luo College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.)
Yong Zhang College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.)
Qing Chen College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.)
Fen Zhang College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.)
Ronggao Gong College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.)
Yan Wang College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.) Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu 611130, China
Xiaorong Wang College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.) Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu 611130, China
Haoru Tang College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China; (M.L.); (F.X.); (J.L.); (B.S.); (Y.L.); (Y.Z.); (Q.C.); (F.Z.); (Y.W.); (X.W.) Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu 611130, China Correspondence: ; Tel.: +86-288-629-1949

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Liu X, Sun L, Wu Q, Men X, Yao L, Xing S. Transcriptome profile analysis reveals the ontogenesis of rooted chichi in Ginkgo biloba L. Gene 2018;669:8-14. [DOI: 10.1016/j.gene.2018.05.066] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2017] [Revised: 05/11/2018] [Accepted: 05/17/2018] [Indexed: 01/18/2023]

Lutova LA, Dodueva IE, Lebedeva MA, Tvorogova VE. Transcription factors in developmental genetics and the evolution of higher plants. RUSS J GENET+ 2015. [DOI: 10.1134/s1022795415030084] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]