[Lack of GAGA protein in Trl mutants causes massive cell death in Drosophila spermatogenesis and oogenesis]

Белок дрозофилы GAGA (GAF) является фактором эпигенетической регуляции транскрипции большой группы генов с широким разнообразием клеточных функций. GAF кодируется геном Trithorax-like (Trl), который экспрессируется в различных органах и тканях на всех стадиях онтогенеза дрозофилы. Мутации этого гена вызывают множественные нарушения развития. В предыдущих работах мы показали, что этот белок необходим для развития половой системы как самцов, так и самок дрозофилы. Снижение экспрессии гена Trl приводило ко множественным нарушениям спермато- и оогенеза. Одно из значительных нарушений было связано с массовой деградацией и потерей клеток зародышевого пути, что позволило предположить, что этот белок вовлечен в регуляцию клеточной гибели. В представленной работе мы провели более детальное цитологическое исследование, чтобы определить, какой тип гибели клеток зародышевого пути характерен для Trl-мутантов, и происходят ли нарушения или изменения этого процесса по сравнению с нормой. Полученные результаты показали, что недостаток белка GAF вызывает массовую гибель клеток зародышевого пути как у самок, так и самцов дрозофилы, но проявляется эта гибель в зависимости от пола по-разному. У самок, мутантных по гену Trl, фенотипически этот процесс не отличается от нормы и в гибнущих яйцевых камерах выявлены признаки апоптоза и аутофагии клеток зародышевого пути. У самцов, мутантных по гену Trl, в отличие от самок, не обнаружены признаки апоптоза. У самцов мутации Trl индуцируют массовую гибель клеток через аутофагию, что не характерно для сперматогенеза дрозофилы и не описано ранее ни в норме, ни у мутаций по другим генам. Таким образом, недостаток GAF у мутантов Trl приводит к усилению апоптотической и аутофагической гибели клеток зародышевого пути. Эктопическая клеточная гибель и атрофия зародышевой линии, вероятно, связаны с нарушением экспрессии генов-мишеней GAGAфактора, среди которых есть гены, регулирующие как апоптоз, так и аутофагию.

Serial Block-Face Scanning Electron Microscopy Reveals That Intercellular Nuclear Migration Occurs in Most Normal Tobacco Male Meiocytes

Serial block-face scanning electron microscopy (SBF-SEM) was used here to study tobacco male meiosis. Three-dimensional ultrastructural analyses revealed that intercellular nuclear migration (INM) occurs in 90-100% of tobacco meiocytes. At the very beginning of meiosis, every meiocyte connected with neighboring cells by more than 100 channels was capable of INM. At leptotene and zygotene, the nucleus in most tobacco meiocytes approached the cell wall and formed nuclear protuberances (NPs) that crossed the cell wall through the channels and extended into the cytoplasm of a neighboring cell. The separation of NPs from the migrating nuclei and micronuclei formation were not observed. In some cases, the NPs and nuclei of neighboring cells appeared apposed to each other, and the gap between their nuclear membranes became invisible. At pachytene, NPs retracted into their own cells. After that, the INM stopped. We consider INM a normal part of tobacco meiosis, but the reason for such behavior of nuclei is unclear. The results obtained by SBF-SEM suggest that there are still many unexplored features of plant meiosis hidden by limitations of common types of microscopy and that SBF-SEM can turn over a new leaf in plant meiosis research.

GAGA Regulates Border Cell Migration in Drosophila

Collective cell migration is a complex process that happens during normal development of many multicellular organisms, as well as during oncological transformations. In Drosophila oogenesis, a small set of follicle cells originally located at the anterior tip of each egg chamber become motile and migrate as a cluster through nurse cells toward the oocyte. These specialized cells are referred to as border cells (BCs) and provide a simple and convenient model system to study collective cell migration. The process is known to be complexly regulated at different levels and the product of the slow border cells (slbo) gene, the C/EBP transcription factor, is one of the key elements in this process. However, little is known about the regulation of slbo expression. On the other hand, the ubiquitously expressed transcription factor GAGA, which is encoded by the Trithorax-like (Trl) gene was previously demonstrated to be important for Drosophila oogenesis. Here, we found that Trl mutations cause substantial defects in BC migration. Partially, these defects are explained by the reduced level of slbo expression in BCs. Additionally, a strong genetic interaction between Trl and slbo mutants, along with the presence of putative GAGA binding sites within the slbo promoter and enhancer, suggests the direct regulation of this gene by GAGA. This idea is supported by the reduction in the slbo-Gal4-driven GFP expression within BC clusters in Trl mutant background. However, the inability of slbo overexpression to compensate defects in BC migration caused by Trl mutations suggests that there are other GAGA target genes contributing to this process. Taken together, the results define GAGA as another important regulator of BC migration in Drosophila oogenesis.

Cytomixis in plants: facts and doubts

The migration of nuclei between plant cells (cytomixis) is a mysterious cellular phenomenon frequently observable in the male meiosis of higher plants. Cytomixis attracts attention because of unknown cellular mechanisms underlying migration of nuclei and its potential evolutionary significance, since the genetic material is transferred between the cells that form pollen. Although cytomixis was discovered over a century ago, the advance in our understanding of this process has been rather insignificant because of methodological difficulties. The data that allowed for a new insight into this phenomenon were obtained by examining the migrating nuclei with electron and confocal laser microscopy, immunostaining, and fluorescence in situ hybridization. As has been shown, the chromatin migrating between cells is surrounded by an undamaged nuclear membrane. Such chromatin does not undergo heterochromatization and contains normal euchromatin markers. The condensation degree of the migrating chromatin corresponds to the current meiotic stage, and normal structures of synaptonemal complex are present in the migrating part of the nucleus. The cells involved in cytomixis lack any detectable morphological and molecular markers of programmed cell death. It has been shown that individual chromosomes and genomes (in the case of allopolyploids) have no predisposition to the migration between cells, i.e., parts of the nucleus are involved in cytomixis in a random manner. However, the fate of migrating chromatin after it has entered the recipient cell is still vague. A huge amount of indirect data suggests that migrating chromatin is incorporated into the nucleus of the recipient cell; nonetheless, the corresponding direct evidences are still absent. No specific markers of cytomictic chromatin have been yet discovered. Thus, the causes and consequences of cytomixis are still disputable. This review briefs the recent data on the relevant issues, describes the classical and modern methodological approaches to analysis of the intercellular migration of nuclei, and discusses the problems in cytomixis research and its prospects.

Capping protein beta is required for actin cytoskeleton organisation and cell migration during Drosophila oogenesis

Capping protein (CP) is a well-characterised actin-binding protein important for regulation of actin filament (AF) assembly. CP caps the barbed end of AFs, inhibiting the addition and loss of actin monomers. In Drosophila melanogaster, the gene encoding CP β-subunit is named capping protein beta (cpb; see Hopmann et al. [1996] J Cell Biol 133: 1293-305). The cpb level is reduced in the Drosophila bristle actin cytoskeleton and becomes disorganised with abnormal morphology. A reduced level of the CP protein in ovary results in disruption of oocyte determination, and disturbance of nurse cell (NC) cortical integrity and dumping. We describe novel defects appearing in cpb mutants during oogenesis, in which cpb plays an important role in border and centripetal follicle cell migration, ring canal development and cytoplasmic AF formation. The number of long cytoplasmic AFs was dramatically reduced in cpb hypomorphs and abnormal actin aggregates was seen on the inner side of NC membranes. A hypothesis to explain the formation of abnormal short-cut cytoplasmic AFs and actin aggregates in the cpb mutant NCs was proffered, along with a discussion of the reasons for 'dumpless' phenotype formation in the mutants.

Automatic annotation of spatial expression patterns via sparse Bayesian factor models

Advances in reporters for gene expression have made it possible to document and quantify expression patterns in 2D–4D. In contrast to microarrays, which provide data for many genes but averaged and/or at low resolution, images reveal the high spatial dynamics of gene expression. Developing computational methods to compare, annotate, and model gene expression based on images is imperative, considering that available data are rapidly increasing. We have developed a sparse Bayesian factor analysis model in which the observed expression diversity of among a large set of high-dimensional images is modeled by a small number of hidden common factors. We apply this approach on embryonic expression patterns from a Drosophila RNA in situ image database, and show that the automatically inferred factors provide for a meaningful decomposition and represent common co-regulation or biological functions. The low-dimensional set of factor mixing weights is further used as features by a classifier to annotate expression patterns with functional categories. On human-curated annotations, our sparse approach reaches similar or better classification of expression patterns at different developmental stages, when compared to other automatic image annotation methods using thousands of hard-to-interpret features. Our study therefore outlines a general framework for large microscopy data sets, in which both the generative model itself, as well as its application for analysis tasks such as automated annotation, can provide insight into biological questions.

High throughput image acquisition is a quickly increasing new source of data for problems in computational biology, such as phenotypic screens. Given the very diverse nature of imaging technology, samples, and biological questions, approaches are oftentimes very tailored and ad hoc to a specific data set. In particular, the image-based genome scale profiling of gene expression patterns via approaches like in situ hybridization requires the development of accurate and automatic image analysis systems for understanding regulatory networks and development of multicellular organisms. Here, we present a computational method for automated annotation of Drosophila gene expression images. This framework allows us to extract, identify and compare spatial expression patterns, of essence for higher organisms. Based on a sparse feature extraction technique, we successfully cluster and annotate expression patterns with high reliability, and show that the model represents a “vocabulary” of basic patterns reflecting common function or regulation.